Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 2.8e-231 805.1 445 100.0
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 2.4e-198 695.7 448 90.6
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 6.0e-109 398.7 453 58.9
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 3.0e-100 369.8 460 54.6
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 1.4e-97 360.9 455 51.4
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 6.0e-93 345.5 455 52.5
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.2e-85 321.2 455 49.5
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 1.7e-79 300.8 461 46.2
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 2.5e-78 297.0 459 51.4
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 3.2e-78 296.6 456 48.5
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 3.6e-77 293.1 408 49.3
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 1.8e-76 290.8 455 48.1
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 5.1e-76 289.3 454 47.6
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 3.4e-72 276.6 457 44.0
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 9.7e-67 258.5 447 50.3
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 1.8e-65 254.2 456 49.3
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 1.4e-60 238.0 446 41.7
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 6.7e-60 235.7 478 40.6
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 2.2e-55 220.7 481 40.1
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 6.1e-53 212.6 472 37.5
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 2.6e-51 207.2 472 37.3
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 1.8e-49 201.1 461 38.2
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 1.6e-45 188.0 470 34.3
Psat2g057960 Pisum sativum HOM05D003726 ORTHO05D003520 5.2e-44 183.0 433 37.6
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 5.7e-43 179.5 467 35.8
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 7.5e-43 179.1 467 35.8
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 1.7e-42 177.9 469 34.3
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 2.8e-42 177.2 478 36.2
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 7.7e-40 169.1 467 34.9
Ca_05609_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 1.3e-39 168.3 291 42.3
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 6.6e-39 166.0 433 31.9
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 6.6e-39 166.0 446 36.3
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 4.2e-38 163.3 446 34.3
TPR.G34575 Trifolium pratense HOM05D003726 ORTHO05D003520 1.6e-37 161.4 440 35.2
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 4.0e-36 156.8 465 33.5
arahy.Tifrunner.gnm1.ann1.8UNH89 Arachis hypogaea HOM05D003726 ORTHO05D003520 1.3e-34 151.8 462 31.8
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea HOM05D003726 ORTHO05D003520 2.9e-34 150.6 460 32.0
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 8.3e-34 149.1 461 32.3
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 5.4e-33 146.4 452 32.5
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.6e-32 144.8 435 32.9
Medtr5g071090 Medicago truncatula HOM05D003726 ORTHO05D003520 1.6e-32 144.8 287 38.0
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 2.7e-32 144.1 460 33.0
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.9e-31 140.2 430 30.9
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 6.6e-31 139.4 466 32.0
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 7.3e-30 136.0 408 33.6
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 7.3e-30 136.0 457 32.4
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 7.3e-30 136.0 428 33.2
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.6e-29 134.8 438 29.5
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 1.6e-29 134.8 461 31.9
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 2.0e-27 127.9 440 33.0
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 3.4e-27 127.1 465 30.5
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 3.4e-27 127.1 449 29.4
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.3e-26 125.2 431 32.0
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 1.3e-26 125.2 476 31.7
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 2.2e-26 124.4 464 31.2
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.7e-26 123.6 430 32.3
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 4.9e-26 123.2 430 29.3
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 4.9e-26 123.2 430 32.3
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 6.4e-26 122.9 330 35.2
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 1.9e-25 121.3 429 29.8
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 1.9e-25 121.3 455 33.0
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 2.4e-25 120.9 454 28.2
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 9.2e-25 119.0 443 29.3
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 1.2e-24 118.6 451 28.6
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 7.8e-24 115.9 416 29.1
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 3.0e-23 114.0 439 28.2
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.8e-21 107.5 477 28.3
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 3.6e-21 107.1 465 30.1
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 6.2e-21 106.3 439 28.5
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 3.4e-19 100.5 467 26.6
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 5.8e-19 99.8 432 25.9
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 9.8e-19 99.0 422 28.7
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 9.8e-19 99.0 422 28.7
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 1.7e-18 98.2 444 28.4
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 8.3e-18 95.9 329 32.8
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 1.1e-17 95.5 477 28.5
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 1.1e-17 95.5 441 28.3
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 1.4e-17 95.1 465 27.7
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.9e-17 94.7 463 29.2
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 3.2e-17 94.0 427 27.4
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 2.1e-16 91.3 444 26.4
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 2.7e-16 90.9 449 27.8
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 2.7e-16 90.9 444 27.9
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 2.7e-16 90.9 421 26.1
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 3.5e-16 90.5 432 27.5
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 6.0e-16 89.7 407 26.5
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 6.0e-16 89.7 420 26.7
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.0e-15 89.0 491 27.5
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.7e-15 88.2 430 27.4
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 3.0e-15 87.4 435 26.2
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 3.9e-15 87.0 445 28.1
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 6.6e-15 86.3 445 30.1
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 8.6e-15 85.9 450 26.0
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 1.1e-14 85.5 436 26.6
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 1.9e-14 84.7 442 23.8
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 2.5e-14 84.3 435 27.8
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 7.3e-14 82.8 436 27.3
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 7.3e-14 82.8 447 26.2
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 9.5e-14 82.4 356 27.5
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 1.2e-13 82.0 419 26.7
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 1.6e-13 81.6 434 26.3
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 2.1e-13 81.3 434 27.0
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 4.7e-13 80.1 457 26.0
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.1e-12 79.0 433 25.2
CDE08G1412 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 1.4e-12 78.6 452 25.2
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 1.4e-12 78.6 435 26.0
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 2.3e-12 77.8 447 25.7
C09p50710 Brassica napus HOM05D011448 ORTHO05D003520 3.1e-12 77.4 348 28.4
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 3.1e-12 77.4 377 25.7
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 4.0e-12 77.0 452 26.5
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 4.0e-12 77.0 447 24.8
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 5.2e-12 76.6 438 25.8
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 5.2e-12 76.6 450 28.2
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 8.9e-12 75.9 438 27.2
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.5e-11 75.1 440 24.1
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 2.0e-11 74.7 313 29.1
FAN21G2890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.4e-11 73.6 151 39.1
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 5.8e-11 73.2 447 24.4
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 9.9e-11 72.4 355 26.5
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 1.3e-10 72.0 451 23.1
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.3e-10 72.0 357 27.2
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 1.3e-10 72.0 455 26.2
CDE04G1884 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 1.7e-10 71.6 444 23.9
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 2.2e-10 71.2 446 23.1
Carub.0008s1925 Capsella rubella HOM05D011448 ORTHO05D003520 4.9e-10 70.1 343 25.4
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 4.9e-10 70.1 437 25.6
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 6.4e-10 69.7 428 25.2
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 8.4e-10 69.3 441 24.9
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 1.1e-09 68.9 452 25.0
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 1.4e-09 68.6 444 27.9
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 2.4e-09 67.8 431 24.8
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 2.4e-09 67.8 367 24.3
FAN21G2593 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.4e-09 66.6 121 45.5
HPP92_013884 Vanilla planifolia HOM05D003726 ORTHO05D003520 1.2e-08 65.5 450 24.9
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 1.2e-08 65.5 356 25.6
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.5e-08 63.9 315 28.6
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 3.5e-08 63.9 309 26.9
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 4.6e-08 63.5 436 24.1
Glyma.01G120800 Glycine max HOM05D003726 ORTHO05D003520 6.0e-08 63.2 377 25.5
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 7.8e-08 62.8 431 21.1
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 7.8e-08 62.8 422 22.0
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 1.0e-07 62.4 261 30.7
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.3e-07 62.0 254 31.1
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 1.3e-07 62.0 455 25.1
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 1.3e-07 62.0 323 26.9
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 1.7e-07 61.6 141 33.3
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 1.7e-07 61.6 412 23.1
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 1.7e-07 61.6 412 23.1
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 1.7e-07 61.6 419 24.8
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 2.3e-07 61.2 420 22.6
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 3.0e-07 60.8 437 22.2
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 3.0e-07 60.8 437 25.2
CSS0025538 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.9e-07 60.5 355 25.1
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 3.9e-07 60.5 308 26.0
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 5.1e-07 60.1 210 29.5
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 5.1e-07 60.1 251 28.3
CSS0029870 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 6.6e-07 59.7 355 24.8
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 6.6e-07 59.7 420 23.1
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 8.6e-07 59.3 169 29.6
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 1.1e-06 58.9 157 29.9
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 1.5e-06 58.5 316 26.3
Lsat_1_v5_gn_5_149441 Lactuca sativa HOM05D003726 ORTHO05D003520 1.9e-06 58.2 219 30.1
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 4.3e-06 57.0 443 23.9
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 5.6e-06 56.6 443 23.9
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.6e-06 56.6 425 21.4
Peaxi162Scf79720g00003 Petunia axillaris HOM05D003726 ORTHO05D003520 5.6e-06 56.6 244 27.9
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 5.6e-06 56.6 472 27.3


User provided reference genes

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