Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G057600 Glycine max HOM05D006986 ORTHO05D008714 1.6e-72 276.2 159 100.0
Glyma.11G164400 Glycine max HOM05D006986 ORTHO05D008714 2.1e-56 222.6 159 78.0
VMungo0540G2396 Vigna mungo HOM05D006986 ORTHO05D008714 1.7e-50 203.0 159 74.2
Phvul.006G073400 Phaseolus vulgaris HOM05D006986 ORTHO05D008714 1.2e-48 196.8 159 74.8
Psat5g153400 Pisum sativum HOM05D006986 ORTHO05D008714 1.1e-44 183.7 159 64.8
Ca_15003_v3 Cicer arietinum L. HOM05D006986 ORTHO05D008714 5.4e-44 181.4 159 67.3
Lalb_Chr15g0083221 Lupinus albus HOM05D006986 ORTHO05D008714 1.7e-42 176.4 158 58.2
Medtr3g031370 Medicago truncatula HOM05D006986 ORTHO05D008714 7.3e-41 171.0 159 61.0
Lj6g0005028 Lotus japonicus HOM05D006986 ORTHO05D008714 6.4e-37 157.9 164 53.7
GSVIVG01024640001 Vitis vinifera HOM05D006986 ORTHO05D008714 7.8e-35 151.0 163 50.9
Actinidia23203 Actinidia chinensis HOM05D006986 ORTHO05D008714 8.9e-31 137.5 164 48.2
Nitab4.5_0000758g0110 Nicotiana tabacum HOM05D006986 ORTHO05D008714 3.4e-30 135.6 169 47.3
QL01p026443 Quercus lobata HOM05D006986 ORTHO05D008714 3.7e-29 132.1 168 52.4
arahy.Tifrunner.gnm1.ann1.58BUY7 Arachis hypogaea HOM05D006986 ORTHO05D008714 6.4e-29 131.3 162 59.9
Thecc.09G357000 Theobroma cacao HOM05D006986 ORTHO05D008714 8.4e-29 131.0 167 52.1
CiPaw.13G069900 Carya illinoinensis HOM05D006986 ORTHO05D008714 1.1e-28 130.6 161 57.1
Dinv28693 Davidia involucrata HOM05D006986 ORTHO05D008714 1.4e-28 130.2 166 47.6
Solyc03g098130.3 Solanum lycopersicum HOM05D006986 ORTHO05D008714 2.4e-28 129.4 170 45.3
Sopen03g028830 Solanum pennellii HOM05D006986 ORTHO05D008714 3.2e-28 129.0 172 44.8
Peaxi162Scf00108g00061 Petunia axillaris HOM05D006986 ORTHO05D008714 4.1e-28 128.6 172 45.9
Nitab4.5_0000003g0230 Nicotiana tabacum HOM05D006986 ORTHO05D008714 7.1e-28 127.9 162 48.1
CAN.G637.24 Capsicum annuum HOM05D006986 ORTHO05D008714 3.5e-27 125.6 163 48.5
Cc01_g14800 Coffea canephora HOM05D006986 ORTHO05D008714 3.5e-27 125.6 169 52.1
arahy.Tifrunner.gnm1.ann1.RI1AQ0 Arachis hypogaea HOM05D006986 ORTHO05D008714 4.6e-27 125.2 162 57.4
Peaxi162Scf00060g00081 Petunia axillaris HOM05D006986 ORTHO05D008714 4.6e-27 125.2 172 45.3
Duzib168G0630 Durio zibethinus HOM05D006986 ORTHO05D008714 6.0e-27 124.8 156 53.2
Peaxi162Scf01176g00011 Petunia axillaris HOM05D006986 ORTHO05D008714 1.0e-26 124.0 172 44.8
PGSC0003DMG401031052 Solanum tuberosum HOM05D006986 ORTHO05D008714 1.3e-26 123.6 172 43.6
Cpa.g.sc2.365 Carica papaya HOM05D006986 ORTHO05D008714 3.9e-26 122.1 160 45.0
TAR636G2132 Trochodendron aralioides HOM05D006986 ORTHO05D008714 3.9e-26 122.1 173 43.9
Nn2g10992 Nelumbo nucifera HOM05D006986 ORTHO05D008714 5.1e-26 121.7 175 50.9
Peaxi162Scf00154g00045 Petunia axillaris HOM05D006986 ORTHO05D008714 5.1e-26 121.7 172 44.8
TAR633G1018 Trochodendron aralioides HOM05D006986 ORTHO05D008714 5.1e-26 121.7 171 45.6
DCAR_007347 Daucus carota HOM05D006986 ORTHO05D008714 1.1e-25 120.6 164 43.9
FvH4_3g39700 Fragaria vesca HOM05D006986 ORTHO05D008714 1.5e-25 120.2 167 47.9
FAN16G0899 Fragaria x ananassa HOM05D006986 ORTHO05D008714 1.5e-25 120.2 167 47.9
Lsat_1_v5_gn_8_111400 Lactuca sativa HOM05D006986 ORTHO05D008714 2.5e-25 119.4 154 53.2
FAN11G3553 Fragaria x ananassa HOM05D006986 ORTHO05D008714 4.3e-25 118.6 161 47.8
FAN25G2061 Fragaria x ananassa HOM05D006986 ORTHO05D008714 5.6e-25 118.2 160 48.8
Gohir.D03G142700 Gossypium hirsutum HOM05D006986 ORTHO05D008714 5.6e-25 118.2 169 47.9
Atru.chr3.4128 Acer truncatum HOM05D006986 ORTHO05D008714 1.2e-24 117.1 155 44.5
Haze_24406 Corylus avellana HOM05D006986 ORTHO05D008714 1.6e-24 116.7 153 48.4
SGA_v2.0_scaffold120G32953 Striga asiatica HOM05D006986 ORTHO05D008714 1.6e-24 116.7 153 55.6
vmacro14620 Vaccinium macrocarpon HOM05D006986 ORTHO05D008714 2.1e-24 116.3 162 43.2
TWI79G1150 Tripterygium wilfordii HOM05D006986 ORTHO05D008714 4.7e-24 115.2 178 48.9
Oeu029417.1 Olea europaea HOM05D006986 ORTHO05D008714 6.2e-24 114.8 170 43.5
Sed0010409 Sechium edule HOM05D006986 ORTHO05D008714 1.1e-23 114.0 165 44.2
Peaxi162Scf00055g00052 Petunia axillaris HOM05D006986 ORTHO05D008714 4.0e-23 112.1 172 41.3
PGR102G2392 Punica granatum HOM05D006986 ORTHO05D008714 5.2e-23 111.7 163 50.9
Cfa011771 Carpinus fangiana HOM05D006986 ORTHO05D008714 6.8e-23 111.3 156 46.2
ClCG03G000370 Citrullus lanatus HOM05D006986 ORTHO05D008714 8.9e-23 110.9 161 43.5
MSTRG.12687 Avicennia marina HOM05D006986 ORTHO05D008714 1.2e-22 110.5 150 52.0
SalBow2G1752 Salvia bowleyana HOM05D006986 ORTHO05D008714 1.2e-22 110.5 160 52.5
CsaV3_1G036550 Cucumis sativus L. HOM05D006986 ORTHO05D008714 1.5e-22 110.2 162 43.2
Sp1g05740 Schrenkiella parvula HOM05D006986 ORTHO05D008714 1.5e-22 110.2 154 42.9
Gorai.003G149800 Gossypium raimondii HOM05D006986 ORTHO05D008714 2.0e-22 109.8 164 49.4
Manes.18G142700 Manihot esculenta HOM05D006986 ORTHO05D008714 2.0e-22 109.8 161 44.7
Rhsim01G0240600 Rhododendron simsii HOM05D006986 ORTHO05D008714 2.0e-22 109.8 156 41.7
BcaB03g13411 Brassica carinata HOM05D006986 ORTHO05D008714 3.4e-22 109.0 161 44.1
MELO3C020513.2 Cucumis melo HOM05D006986 ORTHO05D008714 3.4e-22 109.0 162 43.2
Migut.N00765 Erythranthe guttata HOM05D006986 ORTHO05D008714 4.4e-22 108.6 167 43.7
THA.LOC104800770 Tarenaya hassleriana HOM05D006986 ORTHO05D008714 4.4e-22 108.6 156 50.0
Potri.009G077700 Populus trichocarpa HOM05D006986 ORTHO05D008714 5.8e-22 108.2 167 41.3
Eucgr.B03999 Eucalyptus grandis HOM05D006986 ORTHO05D008714 7.6e-22 107.8 167 50.3
Sabra09G0059300 Salix brachista HOM05D006986 ORTHO05D008714 1.3e-21 107.1 166 47.6
Ah.08g215140 Amaranthus hybridus HOM05D006986 ORTHO05D008714 2.2e-21 106.3 167 38.3
Peaxi162Scf00222g00001 Petunia axillaris HOM05D006986 ORTHO05D008714 3.8e-21 105.5 165 44.8
Carub.0001s0631 Capsella rubella HOM05D006986 ORTHO05D008714 4.9e-21 105.1 161 48.4
HanXRQChr02g0033811 Helianthus annuus HOM05D006986 ORTHO05D008714 4.9e-21 105.1 159 51.6
TPR.G35622 Trifolium pratense HOM05D006986 ORTHO05D008714 6.4e-21 104.8 106 54.7
CARHR006710 Cardamine hirsuta HOM05D006986 ORTHO05D008714 8.4e-21 104.4 162 49.4
Peaxi162Scf01176g00002 Petunia axillaris HOM05D006986 ORTHO05D008714 1.9e-20 103.2 150 45.3
MD03G1055700 Malus domestica HOM05D006986 ORTHO05D008714 2.4e-20 102.8 169 43.8
Thhalv10008798m.g Eutrema salsugineum HOM05D006986 ORTHO05D008714 3.2e-20 102.4 161 40.4
unitig_60.g25554 Utricularia gibba HOM05D006986 ORTHO05D008714 7.1e-20 101.3 161 40.4
ECA240G2743 Erigeron canadensis HOM05D006986 ORTHO05D008714 1.2e-19 100.5 158 51.9
Gohir.A03G025800 Gossypium hirsutum HOM05D006986 ORTHO05D008714 1.2e-19 100.5 169 46.2
Sc21g0005260 Simmondsia chinensis HOM05D006986 ORTHO05D008714 2.1e-19 99.8 152 46.1
Aqoxy1G01299 Aquilegia oxysepala HOM05D006986 ORTHO05D008714 2.7e-19 99.4 165 47.9
AUR62009676 Chenopodium quinoa HOM05D006986 ORTHO05D008714 6.0e-19 98.2 168 45.8
CANSAT54G0324 Cannabis sativa HOM05D006986 ORTHO05D008714 7.8e-19 97.8 165 49.7
BolC8t47074H Brassica oleracea HOM05D006986 ORTHO05D008714 1.0e-18 97.4 157 45.9
AL1G17080 Arabidopsis lyrata HOM05D006986 ORTHO05D008714 1.3e-18 97.1 155 47.1
Ciclev10029398m.g Citrus clementina HOM05D006986 ORTHO05D008714 2.3e-18 96.3 161 50.3
AT1G07020 Arabidopsis thaliana HOM05D006986 ORTHO05D008714 3.0e-18 95.9 154 49.4
A08p35810 Brassica napus HOM05D006986 ORTHO05D008714 3.9e-18 95.5 160 46.9
BraA08t35488Z Brassica rapa HOM05D006986 ORTHO05D008714 3.9e-18 95.5 160 46.9
CDE12G0683 Ceratophyllum demersum HOM05D006986 ORTHO05D008714 3.9e-18 95.5 148 41.2
C08p02790 Brassica napus HOM05D006986 ORTHO05D008714 8.7e-18 94.4 157 47.1
CDE06G1764 Ceratophyllum demersum HOM05D006986 ORTHO05D008714 1.1e-17 94.0 149 41.6
CDE07G1909 Ceratophyllum demersum HOM05D006986 ORTHO05D008714 1.1e-17 94.0 149 41.6
Aa31LG1G8070 Aethionema arabicum HOM05D006986 ORTHO05D008714 1.9e-17 93.2 157 42.7
AUR62001879 Chenopodium quinoa HOM05D006986 ORTHO05D008714 1.9e-17 93.2 163 41.7
PSO765G0136 Papaver somniferum HOM05D006986 ORTHO05D008714 3.3e-17 92.4 158 50.0
Prupe.6G049000 Prunus persica HOM05D006986 ORTHO05D008714 7.3e-17 91.3 170 47.1
PSO170G2557 Papaver somniferum HOM05D006986 ORTHO05D008714 4.8e-16 88.6 141 41.1
RcHm_v2.0_Chr5g0071561 Rosa chinensis HOM05D006986 ORTHO05D008714 1.4e-15 87.0 167 38.9
EL10Ac7g15912 Beta vulgaris HOM05D000133 ORTHO05D000259 9.0e-15 84.3 153 45.1
Hund29010 Selenicereus undatus HOM05D006986 ORTHO05D008714 2.0e-14 83.2 167 48.5
Hund29014 Selenicereus undatus HOM05D006986 ORTHO05D008714 2.0e-14 83.2 167 48.5
Actinidia32614 Actinidia chinensis HOM05D006986 ORTHO05D008714 9.9e-14 80.9 138 50.0
COL.COLO4_11142 Corchorus olitorius HOM05D006986 ORTHO05D008714 1.7e-13 80.1 56 64.3
PSO339G5371 Papaver somniferum HOM05D006986 ORTHO05D008714 8.4e-13 77.8 143 42.0
Glyma.06G163400 Glycine max HOM05D006986 ORTHO05D008714 1.9e-12 76.6 51 68.6
HPP92_003693 Vanilla planifolia HOM05D006986 ORTHO05D008714 7.1e-12 74.7 151 35.1
FvH4_3g21494 Fragaria vesca HOM05D006986 ORTHO05D008714 3.3e-09 65.9 60 55.0
PSO349G0135 Papaver somniferum HOM05D006986 ORTHO05D008714 2.8e-08 62.8 101 37.6
ATR0174G018 Amborella trichopoda HOM05D006986 ORTHO05D008714 3.4e-06 55.8 157 30.6


User provided reference genes

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