Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 4.1e-122 441.4 227 100.0
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 3.2e-114 415.2 227 93.8
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 8.6e-112 407.1 227 92.1
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 3.1e-109 398.7 227 89.0
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 1.3e-107 393.3 227 88.1
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.1e-106 390.2 227 86.8
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 3.2e-106 388.7 227 87.7
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 3.2e-106 388.7 227 87.2
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.2e-106 388.7 227 86.3
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 3.2e-106 388.7 226 87.6
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 5.4e-106 387.9 227 86.8
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 7.1e-106 387.5 227 87.2
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 9.2e-106 387.1 227 88.1
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.2e-105 386.7 228 86.8
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 2.1e-105 386.0 227 85.0
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 3.5e-105 385.2 227 86.8
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 85.5
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 4.6e-105 384.8 228 87.3
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 7.8e-105 384.0 227 85.5
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 1.0e-104 383.6 227 86.3
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 1.7e-104 382.9 226 86.7
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 1.7e-104 382.9 227 84.6
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.7e-104 382.9 228 86.0
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 2.3e-104 382.5 227 84.6
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 3.0e-104 382.1 227 86.8
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 85.9
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 85.9
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 5.1e-104 381.3 227 85.5
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 82.8
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 85.5
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.1e-103 380.2 227 84.6
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 3.3e-103 378.6 226 86.7
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 5.6e-103 377.9 227 83.7
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 7.3e-103 377.5 226 86.7
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 7.3e-103 377.5 227 84.1
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 1.2e-102 376.7 226 85.8
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 2.8e-102 375.6 227 84.1
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.8e-102 375.6 227 82.8
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 2.8e-102 375.6 230 84.8
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 84.1
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 6.2e-102 374.4 227 83.7
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.1e-101 373.6 227 83.7
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 4.0e-101 371.7 229 83.8
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 4.0e-101 371.7 227 84.1
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 5.2e-101 371.3 219 86.3
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 8.9e-101 370.5 229 83.8
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 1.2e-100 370.2 227 84.1
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 1.5e-100 369.8 227 82.8
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.0e-100 369.4 228 83.3
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 3.4e-100 368.6 227 81.9
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 4.4e-100 368.2 229 83.4
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 5.8e-100 367.9 229 83.0
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 7.6e-100 367.5 227 81.1
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 7.6e-100 367.5 214 86.4
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 9.9e-100 367.1 227 81.1
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 9.9e-100 367.1 227 81.1
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 9.9e-100 367.1 229 83.4
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 9.9e-100 367.1 228 82.9
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 81.5
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 81.1
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 81.1
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.3e-99 366.7 228 82.9
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 1.7e-99 366.3 219 83.6
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.7e-99 366.3 227 81.1
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 1.7e-99 366.3 227 80.6
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 2.2e-99 365.9 228 82.0
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 2.2e-99 365.9 227 81.5
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.2e-99 365.9 229 82.5
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 2.2e-99 365.9 228 81.6
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 4.9e-99 364.8 214 86.0
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 6.4e-99 364.4 226 81.0
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.1e-98 363.6 227 80.6
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 1.4e-98 363.2 227 80.2
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 1.9e-98 362.8 227 80.2
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 1.9e-98 362.8 213 85.9
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 2.4e-98 362.5 206 89.8
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 9.3e-98 360.5 227 80.6
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 9.3e-98 360.5 233 80.7
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 9.3e-98 360.5 227 79.3
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 9.3e-98 360.5 227 79.3
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 2.1e-97 359.4 227 80.2
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 2.7e-97 359.0 227 80.2
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 3.5e-97 358.6 214 85.0
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.0e-96 357.1 227 78.4
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 1.7e-96 356.3 265 72.1
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 2.3e-96 355.9 207 87.0
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 2.3e-96 355.9 227 79.7
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 3.0e-96 355.5 228 81.6
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 3.9e-96 355.1 225 79.6
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 3.9e-96 355.1 227 79.7
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 6.6e-96 354.4 225 82.2
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 8.7e-96 354.0 227 76.7
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 8.7e-96 354.0 228 80.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.5e-95 353.2 218 82.1
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 2.5e-95 352.4 228 77.6
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 3.3e-95 352.1 214 82.7
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 3.3e-95 352.1 227 79.3
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.3e-94 350.1 227 77.1
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 1.3e-94 350.1 227 78.0
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 3.6e-94 348.6 214 79.9
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 8.1e-94 347.4 214 82.2
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.4e-93 346.7 214 82.7
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 2.4e-93 345.9 205 82.9
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 4.0e-93 345.1 206 83.5
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 9.0e-93 344.0 215 80.9
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 9.0e-93 344.0 214 80.8
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.2e-92 343.6 214 80.8
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 1.5e-92 343.2 214 81.3
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 4.2e-90 335.1 214 77.1
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.2e-89 333.6 195 86.7
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 6.0e-89 331.3 237 73.0
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.0e-88 330.5 202 84.2
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 2.3e-88 329.3 227 74.9
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.3e-88 329.3 228 73.2
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 8.1e-86 320.9 190 84.7
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 3.1e-85 318.9 212 74.5
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 2.0e-84 316.2 222 78.4
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 3.2e-82 308.9 227 72.7
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 7.9e-81 304.3 191 78.5
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 2.1e-78 296.2 227 67.8
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 4.0e-77 292.0 191 75.4
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 1.3e-75 287.0 164 89.0
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 3.9e-72 275.4 229 66.8
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 3.9e-72 275.4 224 63.8
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 6.7e-72 274.6 216 66.2
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 3.7e-70 268.9 193 75.1
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.1e-69 267.3 164 80.5
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 4.1e-69 265.4 227 65.2
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 1.4e-66 256.9 193 68.9
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 3.5e-65 252.3 197 70.6
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 4.6e-65 251.9 160 77.5
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 4.8e-62 241.9 150 80.0
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 1.1e-61 240.7 153 75.2
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 4.1e-61 238.8 237 53.2
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 8.5e-59 231.1 154 78.6
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 1.1e-55 220.7 215 53.0
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.1e-53 214.2 201 60.7
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 1.6e-49 200.3 131 74.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 8.0e-41 171.4 104 83.7
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 8.0e-41 171.4 100 82.0
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 6.3e-38 161.8 115 70.4
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.2e-32 142.1 87 79.3
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.3e-30 137.5 109 67.0
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 1.6e-28 130.6 135 55.6
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 3.5e-28 129.4 92 68.5
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.6e-25 120.6 113 60.2
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 7.2e-18 95.1 51 92.2
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 8.9e-16 88.2 63 66.7
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 4.9e-14 82.4 70 64.3
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.8e-13 80.5 96 49.0
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 5.4e-13 79.0 68 55.9
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 7.0e-13 78.6 114 41.2
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 9.5e-10 68.2 211 27.5
Pp3c15_16340 Physcomitrium patens HOM05D000088 ORTHO05D001217 4.0e-08 62.8 151 29.8
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.2e-07 61.2 63 55.6
Pp3c9_16610 Physcomitrium patens HOM05D000088 ORTHO05D001217 2.6e-07 60.1 151 29.1
Lsat_1_v5_gn_8_46420 Lactuca sativa HOM05D000094 ORTHO05D002350 3.4e-07 59.7 108 33.3
ATR0824G273 Amborella trichopoda HOM05D000088 ORTHO05D001217 1.3e-06 57.8 151 28.5
Prupe.7G035700 Prunus persica HOM05D000223 ORTHO05D008670 3.7e-06 56.2 155 31.0
Gohir.A13G001700 Gossypium hirsutum HOM05D000223 ORTHO05D008670 6.4e-06 55.5 160 29.4
SEGI_17624 Sequoiadendron giganteum HOM05D000088 ORTHO05D001217 6.4e-06 55.5 151 27.2


User provided reference genes

Program Settings