Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 2.5e-107 392.1 194 100.0
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 3.7e-95 351.7 217 82.0
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 1.8e-86 322.8 202 82.7
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 1.5e-85 319.7 198 82.3
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 1.6e-82 309.7 192 84.4
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 4.1e-78 295.0 190 82.1
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 9.4e-75 283.9 201 74.1
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.3e-71 273.5 162 82.7
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.4e-70 270.0 161 82.6
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.8e-70 269.6 231 65.8
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 4.1e-70 268.5 188 74.5
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 1.2e-69 266.9 167 77.8
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 5.9e-69 264.6 193 70.5
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 5.0e-68 261.5 160 81.2
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 6.5e-68 261.2 192 70.8
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 6.5e-68 261.2 183 72.1
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 6.5e-68 261.2 156 80.8
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.1e-67 260.4 156 80.1
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 3.2e-67 258.8 153 82.4
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 5.5e-67 258.1 195 68.2
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 7.2e-67 257.7 153 81.7
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 3.6e-66 255.4 158 82.9
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 3.6e-66 255.4 151 82.8
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 6.1e-66 254.6 189 66.1
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 3.0e-65 252.3 157 77.7
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 5.2e-65 251.5 163 74.2
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.5e-64 250.0 162 73.5
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 1.5e-64 250.0 171 74.9
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 1.5e-64 250.0 159 76.7
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 3.4e-64 248.8 169 74.0
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 4.4e-64 248.4 151 80.1
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 5.7e-64 248.1 155 77.4
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 5.7e-64 248.1 172 73.8
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 7.5e-64 247.7 156 77.6
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 1.3e-63 246.9 184 71.7
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 1.7e-63 246.5 159 74.8
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 1.7e-63 246.5 154 77.3
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 1.7e-63 246.5 154 77.3
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 1.7e-63 246.5 154 77.3
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 1.7e-63 246.5 154 77.9
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 4.8e-63 245.0 151 78.1
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 6.3e-63 244.6 168 74.4
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 8.3e-63 244.2 151 80.1
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 1.4e-62 243.4 181 70.7
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 5.4e-62 241.5 151 78.1
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 1.6e-61 240.0 170 72.9
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 2.0e-61 239.6 168 74.4
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 2.0e-61 239.6 188 68.1
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 2.7e-61 239.2 192 66.1
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 1.7e-60 236.5 171 70.8
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 1.7e-60 236.5 174 70.7
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 2.2e-60 236.1 160 73.8
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 6.5e-60 234.6 175 67.4
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 8.5e-60 234.2 199 62.8
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 8.5e-60 234.2 179 68.2
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 9.4e-59 230.7 166 71.7
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 3.6e-58 228.8 171 70.2
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 2.3e-57 226.1 180 65.0
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 3.0e-57 225.7 158 72.8
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 4.0e-57 225.3 155 74.8
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 1.2e-56 223.8 160 68.8
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 2.0e-56 223.0 153 68.6
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 4.4e-56 221.9 153 67.3
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.3e-55 220.3 159 71.7
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 1.7e-55 219.9 158 70.3
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 6.3e-55 218.0 156 67.3
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 6.3e-55 218.0 231 54.1
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 8.3e-55 217.6 163 69.9
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 1.8e-54 216.5 209 59.3
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 1.8e-54 216.5 171 64.3
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 2.4e-54 216.1 162 66.0
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 4.1e-54 215.3 158 70.9
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 5.4e-54 214.9 158 71.5
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 7.0e-54 214.5 166 65.1
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 9.2e-54 214.2 185 58.9
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 2.0e-53 213.0 159 69.8
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 2.7e-53 212.6 154 68.8
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 5.9e-53 211.5 193 60.6
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.3e-52 210.3 155 67.7
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 5.0e-52 208.4 156 65.4
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 6.6e-52 208.0 169 65.1
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 3.3e-51 205.7 119 84.9
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 3.3e-51 205.7 119 82.4
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 4.3e-51 205.3 158 62.7
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 1.2e-50 203.8 154 66.2
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 4.7e-50 201.8 151 64.9
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 6.1e-50 201.4 158 68.4
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 6.1e-50 201.4 151 70.2
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 1.4e-49 200.3 114 86.8
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 8.9e-49 197.6 112 85.7
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 2.6e-48 196.1 114 86.0
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 4.4e-48 195.3 119 78.2
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.3e-47 193.7 124 75.8
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.3e-47 193.7 113 85.0
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 3.7e-47 192.2 141 70.2
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 3.7e-47 192.2 151 60.3
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 3.7e-47 192.2 114 84.2
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 4.9e-47 191.8 122 81.1
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 3.2e-46 189.1 110 83.6
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.1e-46 188.7 112 83.9
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 5.4e-46 188.3 115 80.9
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.2e-45 187.2 155 62.6
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.2e-45 187.2 114 82.5
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 2.7e-45 186.0 156 59.6
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 3.5e-45 185.7 140 67.1
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 3.5e-45 185.7 157 65.0
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 4.6e-45 185.3 170 56.5
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 4.6e-45 185.3 154 59.7
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 1.0e-44 184.1 114 83.3
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.0e-44 182.6 156 56.4
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 3.9e-44 182.2 152 55.9
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 3.9e-44 182.2 112 80.4
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 3.9e-44 182.2 121 71.1
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 5.0e-44 181.8 183 56.3
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 5.6e-43 178.3 131 68.7
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.6e-42 176.8 172 53.5
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.6e-42 176.8 116 76.7
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 3.6e-42 175.6 158 62.0
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 1.0e-41 174.1 162 54.9
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 1.5e-40 170.2 114 71.9
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 3.4e-40 169.1 151 56.3
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 2.2e-39 166.4 112 73.2
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.1e-38 164.1 194 52.6
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.4e-38 163.7 160 53.1
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.9e-35 153.3 138 62.3
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 9.5e-35 151.0 132 61.4
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 1.6e-34 150.2 127 56.7
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.4e-33 147.1 96 72.9
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 4.0e-33 145.6 112 63.4
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 2.6e-32 142.9 77 85.7
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 8.3e-31 137.9 171 50.3
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 1.2e-29 134.0 129 55.8
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.3e-28 129.8 156 48.7
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 1.1e-27 127.5 115 63.5
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 9.5e-27 124.4 69 87.0
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 3.6e-26 122.5 81 76.5
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 3.8e-23 112.5 148 48.0
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 4.9e-23 112.1 91 65.9
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 6.4e-23 111.7 70 78.6
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.9e-22 110.2 122 54.9
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.4e-22 109.8 71 76.1
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.2e-22 109.4 77 61.0
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 4.1e-22 109.0 121 54.5
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 9.2e-22 107.8 84 63.1
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 1.5e-19 100.5 151 40.4
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 5.8e-16 88.6 55 74.5
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 9.9e-16 87.8 55 74.5
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 2.1e-13 80.1 83 51.8
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 1.3e-12 77.4 43 76.7
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 3.0e-12 76.3 44 79.5
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 3.3e-11 72.8 41 78.0
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 5.6e-11 72.0 60 56.7
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.6e-10 70.5 43 76.7
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 2.1e-10 70.1 48 62.5
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 3.6e-10 69.3 45 66.7
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.1e-09 67.8 47 61.7
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.4e-09 66.6 64 54.7
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 2.4e-09 66.6 62 51.6
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 3.1e-09 66.2 90 44.4
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 9.0e-09 64.7 42 66.7
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 9.9e-08 61.2 42 61.9
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 9.9e-08 61.2 61 49.2
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 1.3e-07 60.8 41 65.9
HanXRQChr08g0231131 Helianthus annuus HOM05D004274 ORTHO05D004980 1.7e-07 60.5 40 67.5
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 1.7e-07 60.5 56 57.1
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.2e-07 60.1 41 68.3
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 1.1e-06 57.8 45 57.8
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 1.9e-06 57.0 44 50.0
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 4.2e-06 55.8 90 31.1
RcHm_v2.0_Chr4g0393461 Rosa chinensis HOM05D004274 ORTHO05D004980 7.1e-06 55.1 44 61.4


User provided reference genes

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