Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 0.0e+00 1218.0 726 100.0
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 4.2e-277 958.0 751 81.5
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.0e-263 912.5 733 78.4
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 3.0e-243 845.5 731 75.2
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 4.9e-185 652.1 742 65.2
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 6.7e-158 562.0 752 54.1
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.4e-155 553.5 737 56.4
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 1.0e-150 538.1 785 57.3
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 5.9e-146 522.3 701 54.2
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.0e-142 511.5 797 52.9
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 6.7e-142 508.8 748 50.9
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 5.7e-141 505.8 798 52.4
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.4e-139 501.1 796 52.9
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 3.1e-139 500.0 806 51.6
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.4e-134 484.6 757 49.5
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 5.7e-133 479.2 782 49.4
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 3.2e-128 463.4 654 52.1
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 2.2e-124 450.7 794 49.6
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 8.3e-124 448.7 788 51.9
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 2.5e-120 437.2 675 57.9
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 3.4e-117 426.8 763 48.1
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 2.3e-110 404.1 771 44.9
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 3.4e-109 400.2 795 49.4
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 1.7e-108 397.9 788 45.9
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 4.9e-108 396.4 805 44.0
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.8e-107 394.4 750 45.9
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.4e-107 394.0 683 44.9
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 4.1e-107 393.3 775 45.7
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.6e-106 391.3 775 46.7
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.6e-106 391.3 775 46.7
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.6e-106 391.3 712 51.0
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 5.9e-106 389.4 669 50.2
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 1.1e-104 385.2 779 45.4
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.2e-103 381.7 775 45.5
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.4e-102 378.3 777 46.7
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 1.4e-102 378.3 680 48.7
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 8.9e-102 375.6 744 47.8
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.0e-101 374.4 766 44.9
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 2.6e-101 374.0 665 47.1
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 2.6e-101 374.0 804 43.0
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 7.5e-101 372.5 780 43.6
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 1.3e-100 371.7 784 43.0
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 2.9e-100 370.5 795 46.3
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 4.1e-99 366.7 707 48.7
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 5.4e-99 366.3 788 44.3
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 5.4e-99 366.3 736 48.6
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.6e-98 364.8 767 45.6
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 2.7e-98 364.0 790 43.7
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 3.9e-97 360.1 714 49.4
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.4e-94 351.7 802 46.8
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 4.4e-93 346.7 679 44.2
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.1e-91 342.0 762 44.6
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.9e-91 341.3 792 43.7
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 2.4e-91 340.9 764 44.5
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.8e-90 335.9 694 45.4
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 5.1e-89 333.2 303 68.3
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 3.3e-88 330.5 691 43.0
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 6.4e-84 316.2 778 39.2
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 2.4e-83 314.3 776 45.5
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.2e-82 312.0 718 41.6
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.6e-82 311.6 718 43.6
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 5.1e-81 306.6 721 43.8
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 1.1e-80 305.4 804 43.8
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 8.1e-79 299.3 763 44.8
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 4.0e-78 297.0 700 45.1
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 9.9e-77 292.4 694 44.8
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.6e-74 285.0 730 43.8
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 1.5e-72 278.5 731 41.6
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 3.3e-72 277.3 580 42.4
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.3e-71 275.4 761 37.5
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 2.1e-71 274.6 723 43.6
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 4.0e-70 270.4 642 40.0
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 6.9e-70 269.6 697 42.2
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 2.0e-69 268.1 769 42.8
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.4e-67 261.2 668 41.3
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.6e-66 258.5 764 42.8
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 2.7e-66 257.7 624 41.5
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.3e-65 255.4 417 45.6
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 8.7e-65 252.7 612 41.7
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 4.3e-64 250.4 748 41.6
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 5.6e-64 250.0 711 36.6
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 7.4e-64 249.6 724 43.8
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 2.1e-63 248.1 660 39.5
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.1e-62 245.7 708 40.8
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.8e-62 245.0 711 38.4
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 2.4e-62 244.6 765 39.9
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.4e-62 244.6 755 35.8
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 3.1e-62 244.2 454 56.4
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 9.9e-61 239.2 646 38.5
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 8.4e-60 236.1 744 38.8
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 3.5e-58 230.7 152 78.3
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 6.7e-57 226.5 618 46.6
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.3e-56 224.2 773 40.6
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 3.3e-56 224.2 790 39.5
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 9.6e-56 222.6 773 39.8
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 9.6e-56 222.6 666 34.5
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 8.2e-55 219.5 677 35.3
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.0e-54 217.2 707 34.2
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 5.3e-54 216.9 307 49.2
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 1.2e-53 215.7 694 35.6
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 5.8e-53 213.4 722 33.5
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.0e-52 212.6 729 38.3
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 1.0e-52 212.6 744 40.7
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 1.7e-52 211.8 631 36.0
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.2e-52 211.5 755 32.8
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 6.5e-52 209.9 707 32.7
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 7.1e-51 206.5 262 49.6
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 4.6e-50 203.8 703 33.1
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 7.9e-50 203.0 692 39.6
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.0e-49 202.6 698 43.4
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.3e-49 202.2 694 42.9
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.3e-49 201.4 708 42.5
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 1.1e-48 199.1 687 43.4
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.5e-48 198.7 702 33.2
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 4.3e-48 197.2 654 34.3
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 5.7e-48 196.8 702 39.6
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 2.0e-45 188.3 605 34.0
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 2.6e-45 188.0 823 30.7
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.0e-44 186.0 703 35.8
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.7e-44 185.3 266 54.5
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 3.8e-44 184.1 637 39.6
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 8.5e-44 183.0 633 38.1
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.9e-43 181.8 718 38.9
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 3.6e-42 177.6 603 35.2
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 4.6e-42 177.2 677 32.8
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.8e-41 175.3 634 33.9
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 5.1e-41 173.7 685 31.4
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 5.1e-41 173.7 699 31.6
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 8.7e-41 172.9 548 38.0
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.9e-40 171.8 707 32.2
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.3e-40 171.0 646 36.7
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 3.7e-39 167.5 461 38.8
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.3e-36 159.1 634 35.0
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 2.5e-35 154.8 281 42.3
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.2e-35 154.1 635 35.9
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.1e-34 151.8 644 31.5
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.8e-33 148.7 588 31.6
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 2.0e-32 145.2 609 41.5
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 9.7e-32 142.9 456 45.2
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.8e-31 141.4 705 28.4
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 1.8e-30 138.7 365 53.7
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.2e-29 136.0 732 32.7
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 2.0e-29 135.2 654 31.8
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 4.5e-29 134.0 436 35.1
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 7.2e-27 126.7 745 28.7
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.2e-26 125.9 205 41.5
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 6.1e-26 123.6 137 58.4
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.5e-19 102.4 144 51.4
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.2e-19 101.3 147 47.6
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 3.6e-18 97.8 558 33.3
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 8.0e-18 96.7 574 32.8
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 1.4e-17 95.9 513 34.3
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 1.8e-17 95.5 140 45.7
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 2.6e-16 91.7 513 30.2
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.6e-13 82.4 523 29.4
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.7e-13 81.6 237 35.4
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 3.5e-13 81.3 538 29.6
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 3.5e-13 81.3 538 29.6
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.5e-11 75.9 151 43.0
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 1.9e-11 75.5 71 62.0
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.2e-11 74.3 134 38.1
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 5.5e-11 73.9 532 33.8
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 5.5e-11 73.9 71 60.6
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 7.2e-11 73.6 321 31.5
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.2e-10 72.8 248 29.8
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 1.6e-10 72.4 83 59.0
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.4e-09 69.3 182 34.1
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 3.0e-09 68.2 117 46.2
Psat3g059240 Pisum sativum HOM05D003795 ORTHO05D004308 5.2e-09 67.4 97 49.5
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 2.8e-07 61.6 398 28.1
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 3.7e-07 61.2 119 40.3
Lj3g0016708 Lotus japonicus HOM05D004541 ORTHO05D006163 1.8e-06 58.9 118 45.8


User provided reference genes

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