Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 2.2e-97 359.0 189 100.0
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 8.3e-76 287.3 193 84.5
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 1.9e-72 276.2 191 82.2
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 2.8e-71 272.3 191 81.2
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 1.3e-52 210.3 199 66.8
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.1e-51 207.2 196 65.8
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 1.9e-51 206.5 193 64.2
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 7.1e-51 204.5 178 67.4
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 3.9e-49 198.7 187 65.2
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 6.4e-36 154.8 192 54.2
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 4.6e-34 148.7 196 55.1
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 1.0e-33 147.5 196 54.6
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 8.7e-33 144.4 213 47.4
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 2.0e-29 133.3 209 48.8
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 5.8e-29 131.7 179 54.2
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 2.4e-27 126.3 192 46.9
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 7.1e-27 124.8 207 47.3
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 9.3e-27 124.4 190 43.7
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.2e-26 124.0 190 44.2
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 1.6e-26 123.6 157 51.6
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 2.7e-26 122.9 186 43.5
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 3.5e-26 122.5 175 47.4
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 3.5e-26 122.5 198 45.5
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 3.5e-26 122.5 186 47.3
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 4.6e-26 122.1 192 48.4
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 1.0e-25 120.9 199 43.7
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.3e-25 120.6 196 44.4
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.3e-25 120.6 189 47.6
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 1.8e-25 120.2 176 46.0
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 1.8e-25 120.2 199 44.7
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.8e-25 120.2 186 47.3
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 1.8e-25 120.2 174 47.7
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 2.3e-25 119.8 176 45.5
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.3e-25 119.8 189 47.6
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.0e-25 119.4 189 47.6
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 3.9e-25 119.0 196 41.8
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 5.1e-25 118.6 179 46.9
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.3e-24 115.5 174 43.1
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 1.3e-23 114.0 214 43.5
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 1.3e-23 114.0 197 42.1
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 1.6e-23 113.6 186 44.6
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 2.1e-23 113.2 164 46.3
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 2.8e-23 112.8 172 43.0
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 4.8e-23 112.1 176 44.9
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 6.2e-23 111.7 183 48.1
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 1.4e-22 110.5 187 41.7
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 2.4e-22 109.8 196 42.9
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 2.4e-22 109.8 193 44.0
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 4.0e-22 109.0 200 42.0
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 5.3e-22 108.6 201 44.3
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 9.0e-22 107.8 199 42.7
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.2e-21 107.5 190 41.1
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.2e-21 107.5 166 45.8
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 2.0e-21 106.7 176 39.2
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.6e-21 106.3 170 45.3
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 3.4e-21 105.9 202 42.6
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.5e-21 105.5 166 45.2
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 5.8e-21 105.1 194 40.7
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 7.6e-21 104.8 162 45.7
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 9.9e-21 104.4 166 42.8
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 1.3e-20 104.0 162 42.6
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 1.3e-20 104.0 162 42.6
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 2.9e-20 102.8 176 38.6
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 2.9e-20 102.8 178 40.4
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 3.8e-20 102.4 177 43.5
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 4.9e-20 102.1 159 40.9
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 4.9e-20 102.1 103 58.3
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 8.4e-20 101.3 198 41.4
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 1.1e-19 100.9 159 40.3
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.9e-19 100.1 173 42.8
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 1.9e-19 100.1 166 44.6
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 3.2e-19 99.4 208 39.4
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 7.1e-19 98.2 206 35.4
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 7.1e-19 98.2 206 35.4
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 1.2e-18 97.4 203 37.9
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 1.2e-18 97.4 167 41.9
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.6e-18 97.1 227 38.3
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 1.6e-18 97.1 207 38.6
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 2.1e-18 96.7 165 41.8
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.5e-18 95.9 166 42.8
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 3.5e-18 95.9 166 42.8
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 3.5e-18 95.9 206 35.4
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 6.0e-18 95.1 197 43.1
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 5.1e-17 92.0 216 37.0
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 5.1e-17 92.0 213 36.6
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 5.1e-17 92.0 190 40.0
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 6.7e-17 91.7 185 40.5
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 8.7e-17 91.3 96 56.2
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.5e-16 90.5 195 41.5
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 2.5e-16 89.7 190 37.4
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 4.3e-16 89.0 222 39.6
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 7.4e-16 88.2 136 47.1
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 7.4e-16 88.2 195 38.5
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 7.4e-16 88.2 203 37.4
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 9.6e-16 87.8 146 45.2
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 9.6e-16 87.8 195 39.0
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.8e-15 86.3 227 37.9
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 3.7e-15 85.9 207 39.6
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 8.2e-15 84.7 193 40.4
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.4e-14 84.0 219 35.2
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 1.4e-14 84.0 193 34.7
Lj1g0007483 Lotus japonicus HOM05D004654 ORTHO05D005414 1.8e-14 83.6 92 53.3
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.4e-14 83.2 203 37.4
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 2.4e-14 83.2 218 36.2
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.1e-14 82.8 103 50.5
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.1e-14 82.8 103 50.5
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 3.1e-14 82.8 192 38.5
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 3.1e-14 82.8 177 37.9
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 5.3e-14 82.0 226 36.3
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 6.9e-14 81.6 181 38.1
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 9.0e-14 81.3 186 37.6
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 1.5e-13 80.5 226 35.8
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 2.0e-13 80.1 131 44.3
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.0e-13 80.1 95 49.5
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 2.0e-13 80.1 206 36.4
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 2.0e-13 80.1 188 35.1
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 2.6e-13 79.7 193 37.3
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 2.6e-13 79.7 154 41.6
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 3.4e-13 79.3 77 53.2
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 4.5e-13 79.0 198 36.9
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 5.8e-13 78.6 185 36.8
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 5.8e-13 78.6 184 37.5
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 7.6e-13 78.2 194 38.7
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 7.6e-13 78.2 106 48.1
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 1.3e-12 77.4 184 37.5
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 1.7e-12 77.0 154 39.0
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.7e-12 77.0 227 34.8
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 2.9e-12 76.3 192 38.5
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 4.9e-12 75.5 194 37.6
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 6.5e-12 75.1 203 35.0
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 6.5e-12 75.1 195 37.4
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 6.5e-12 75.1 72 55.6
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.1e-11 74.3 89 47.2
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 3.2e-11 72.8 154 36.4
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.2e-11 72.8 68 58.8
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 5.5e-11 72.0 181 35.9
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 5.5e-11 72.0 175 35.4
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 5.5e-11 72.0 190 33.2
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 9.3e-11 71.2 148 39.2
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 9.3e-11 71.2 71 52.1
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 2.1e-10 70.1 76 55.3
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 2.7e-10 69.7 182 35.2
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 3.5e-10 69.3 203 34.0
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 7.9e-10 68.2 97 50.5
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 1.0e-09 67.8 217 34.1
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 1.3e-09 67.4 63 58.7
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 8.7e-09 64.7 197 36.0
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 1.5e-08 63.9 54 57.4
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 5.7e-08 62.0 131 38.2
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 3.1e-06 56.2 209 32.5


User provided reference genes

Program Settings