Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 3.2e-40 167.9 83 100.0
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 9.4e-40 166.4 83 98.8
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 4.3e-37 157.5 83 90.4
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 1.7e-36 155.6 83 90.4
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 2.2e-36 155.2 83 89.2
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 8.2e-36 153.3 83 88.0
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 8.2e-36 153.3 83 88.0
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 8.2e-36 153.3 83 88.0
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 9.1e-35 149.8 88 84.1
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 9.1e-35 149.8 80 87.5
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 1.5e-34 149.1 77 89.6
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 4.5e-34 147.5 76 88.2
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 5.9e-34 147.1 77 89.6
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 1.0e-33 146.4 80 86.2
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 1.7e-33 145.6 75 90.7
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.7e-33 145.6 79 86.1
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 2.2e-33 145.2 77 88.3
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 2.2e-33 145.2 77 88.3
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.2e-33 145.2 77 87.0
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.2e-33 145.2 77 87.0
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 2.2e-33 145.2 80 85.0
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 2.2e-33 145.2 77 88.3
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.9e-33 144.8 77 85.7
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.9e-33 144.8 77 87.0
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 3.8e-33 144.4 77 85.7
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 3.8e-33 144.4 80 85.0
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 5.0e-33 144.1 83 83.1
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 6.5e-33 143.7 77 88.3
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 6.5e-33 143.7 77 87.0
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 6.5e-33 143.7 77 84.4
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 8.5e-33 143.3 77 87.0
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 8.5e-33 143.3 82 79.3
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 1.1e-32 142.9 80 81.2
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 1.1e-32 142.9 79 83.5
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 1.1e-32 142.9 77 87.0
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 1.1e-32 142.9 80 83.8
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 1.9e-32 142.1 80 81.2
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 2.5e-32 141.7 83 80.7
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 2.5e-32 141.7 80 83.8
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 2.5e-32 141.7 75 88.0
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 2.5e-32 141.7 80 80.0
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 3.2e-32 141.4 79 82.3
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 3.2e-32 141.4 77 84.4
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 3.2e-32 141.4 75 88.0
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 4.2e-32 141.0 75 86.7
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 7.2e-32 140.2 75 86.7
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 7.2e-32 140.2 80 82.5
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 7.2e-32 140.2 80 82.5
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 9.4e-32 139.8 83 78.3
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 1.2e-31 139.4 80 82.5
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 1.2e-31 139.4 77 81.8
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 1.6e-31 139.0 82 75.6
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 1.6e-31 139.0 77 84.4
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 1.6e-31 139.0 77 81.8
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 1.6e-31 139.0 77 85.7
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 2.1e-31 138.7 77 81.8
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 2.1e-31 138.7 77 81.8
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 2.7e-31 138.3 82 76.8
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 4.7e-31 137.5 80 78.8
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 4.7e-31 137.5 76 81.6
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 6.1e-31 137.1 77 80.5
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 7.9e-31 136.7 80 80.0
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 7.9e-31 136.7 77 80.5
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.8e-30 135.6 80 75.0
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.8e-30 135.6 77 79.2
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 2.3e-30 135.2 80 75.0
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.3e-30 135.2 77 77.9
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 3.0e-30 134.8 80 75.0
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 3.0e-30 134.8 77 77.9
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 3.9e-30 134.4 80 75.0
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 3.9e-30 134.4 74 82.4
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.9e-30 134.4 77 83.1
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 3.9e-30 134.4 77 83.1
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 3.9e-30 134.4 80 73.8
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 6.7e-30 133.7 79 74.7
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 6.7e-30 133.7 80 73.8
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 6.7e-30 133.7 79 74.7
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 8.8e-30 133.3 77 75.3
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 8.8e-30 133.3 77 75.3
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 1.1e-29 132.9 75 76.0
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 1.5e-29 132.5 77 75.3
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 2.0e-29 132.1 80 72.5
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 2.0e-29 132.1 80 72.5
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 2.0e-29 132.1 80 72.5
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 3.3e-29 131.3 80 72.5
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 4.4e-29 131.0 80 70.0
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 5.7e-29 130.6 80 75.0
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 5.7e-29 130.6 96 67.7
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 6.3e-28 127.1 80 70.0
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 8.2e-28 126.7 80 70.0
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 8.2e-28 126.7 80 70.0
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 1.4e-27 125.9 80 68.8
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 1.4e-27 125.9 80 68.8
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 1.4e-27 125.9 80 68.8
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.4e-27 125.9 77 79.2
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.8e-27 125.6 91 65.9
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 2.4e-27 125.2 77 72.7
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 9.1e-27 123.2 66 87.9
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.0e-26 122.1 68 85.3
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.7e-26 120.2 58 89.7
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 2.9e-25 118.2 66 83.3
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 8.5e-25 116.7 72 76.4
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 1.9e-24 115.5 112 51.8
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 7.2e-24 113.6 68 82.4
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 9.4e-24 113.2 63 85.7
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 9.4e-24 113.2 68 80.9
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 1.6e-23 112.5 61 85.2
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 2.1e-23 112.1 70 78.6
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 2.1e-23 112.1 74 68.9
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 4.7e-23 110.9 50 94.0
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 6.1e-23 110.5 66 80.3
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 6.1e-23 110.5 65 76.9
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 1.0e-22 109.8 66 78.8
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.4e-22 109.4 63 82.5
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 6.7e-22 107.1 73 67.1
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 2.6e-21 105.1 80 61.2
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 3.3e-21 104.8 63 76.2
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 2.2e-20 102.1 61 78.7
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 1.4e-19 99.4 61 80.3
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 9.1e-19 96.7 63 77.8
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 2.7e-18 95.1 61 75.4
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 3.5e-18 94.7 51 78.4
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 3.5e-18 94.7 51 78.4
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 7.7e-18 93.6 50 76.0
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 1.9e-16 89.0 48 72.9
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 1.9e-16 89.0 48 72.9
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 1.9e-16 89.0 48 72.9
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 2.1e-15 85.5 52 78.8
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 2.3e-14 82.0 66 59.1
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 8.3e-12 73.6 35 85.7
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 8.3e-12 73.6 62 61.3
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 1.4e-11 72.8 36 77.8
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 2.9e-09 65.1 38 68.4
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.5e-08 62.0 39 79.5
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 4.2e-08 61.2 39 61.5
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 7.2e-08 60.5 71 36.6


User provided reference genes

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