Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 3.1e-95 351.7 162 100.0
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 7.9e-75 283.9 135 94.8
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 8.1e-72 273.9 135 91.1
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 9.0e-71 270.4 131 93.1
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 2.2e-69 265.8 134 85.1
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 2.9e-69 265.4 135 86.7
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 3.8e-69 265.0 135 86.7
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 7.9e-67 257.3 135 83.0
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.3e-66 256.5 135 82.2
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 3.9e-66 255.0 134 82.1
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 8.7e-66 253.8 135 79.3
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 8.7e-66 253.8 134 82.1
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.5e-65 253.1 135 80.0
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.3e-65 251.9 135 79.3
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 4.3e-65 251.5 135 78.5
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 5.6e-65 251.1 135 79.3
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 7.4e-65 250.8 135 80.0
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 7.4e-65 250.8 134 79.1
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 6.2e-64 247.7 135 79.3
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 4.0e-63 245.0 135 76.3
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 4.0e-63 245.0 134 77.6
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 5.3e-63 244.6 142 75.4
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 6.9e-63 244.2 142 75.4
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 6.9e-63 244.2 142 75.4
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 2.0e-62 242.7 134 76.9
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 2.6e-62 242.3 134 76.1
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 5.8e-62 241.1 135 75.6
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 7.6e-62 240.7 134 74.6
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.0e-61 240.4 137 74.5
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 1.0e-61 240.4 135 75.6
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 1.3e-61 240.0 135 78.5
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.7e-61 239.6 135 76.3
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 2.2e-61 239.2 140 70.7
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 2.9e-61 238.8 142 71.1
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 2.9e-61 238.8 133 73.7
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 2.9e-61 238.8 139 71.2
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 6.5e-61 237.7 142 73.9
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 8.4e-61 237.3 135 77.8
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 8.4e-61 237.3 151 69.5
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.1e-60 236.9 140 72.9
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 1.4e-60 236.5 129 76.7
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.9e-60 236.1 135 71.9
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 3.2e-60 235.3 139 74.8
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 3.2e-60 235.3 134 76.1
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 4.2e-60 235.0 129 77.5
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 7.1e-60 234.2 135 75.6
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 9.3e-60 233.8 135 74.8
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 1.2e-59 233.4 135 71.9
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.2e-59 233.4 135 71.1
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 1.2e-59 233.4 139 71.9
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.6e-59 233.0 142 71.1
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.6e-59 233.0 136 69.1
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.6e-59 233.0 135 71.1
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 2.1e-59 232.6 146 68.5
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 3.5e-59 231.9 146 67.8
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 3.5e-59 231.9 135 74.8
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 3.5e-59 231.9 135 70.4
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 4.6e-59 231.5 130 72.3
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 4.6e-59 231.5 135 72.6
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 6.0e-59 231.1 135 74.8
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 6.0e-59 231.1 146 65.8
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 6.0e-59 231.1 135 71.1
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 7.9e-59 230.7 134 69.4
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 1.8e-58 229.6 133 73.7
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 2.3e-58 229.2 134 73.1
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 3.0e-58 228.8 135 72.6
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 5.1e-58 228.0 134 70.9
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 6.7e-58 227.6 135 69.6
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 8.7e-58 227.3 135 70.4
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.1e-57 226.9 136 69.1
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.1e-57 226.9 129 74.4
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 3.3e-57 225.3 127 74.0
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 5.7e-57 224.6 130 73.1
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.6e-56 223.0 135 68.1
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 2.1e-56 222.6 134 70.1
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.8e-56 222.2 136 68.4
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 2.8e-56 222.2 135 67.4
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.7e-56 221.9 136 67.6
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 4.8e-56 221.5 135 71.1
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 6.3e-56 221.1 135 71.1
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 6.3e-56 221.1 134 70.1
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 1.1e-55 220.3 133 72.2
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.4e-55 219.9 132 72.0
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-55 219.5 135 68.9
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 2.4e-55 219.2 133 71.4
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 2.4e-55 219.2 135 68.9
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 5.3e-55 218.0 134 68.7
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 6.9e-55 217.6 134 69.4
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 1.2e-54 216.9 130 69.2
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.2e-54 216.9 126 71.4
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 2.0e-54 216.1 121 76.9
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 3.4e-54 215.3 134 67.9
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.9e-54 214.5 131 70.2
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.3e-53 213.4 134 67.2
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 1.3e-53 213.4 134 68.7
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 2.2e-53 212.6 120 78.3
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 2.2e-53 212.6 130 70.8
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 2.9e-53 212.2 134 64.9
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.9e-53 212.2 121 73.6
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 3.8e-53 211.8 134 66.4
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 3.8e-53 211.8 134 66.4
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 6.5e-53 211.1 181 56.9
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 6.5e-53 211.1 132 67.4
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 1.1e-52 210.3 134 65.7
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 3.2e-52 208.8 134 65.7
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 3.2e-52 208.8 133 66.2
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.2e-52 208.8 130 68.5
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 4.2e-52 208.4 134 64.2
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.2e-52 208.4 130 68.5
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 4.2e-52 208.4 125 68.8
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 5.5e-52 208.0 120 71.7
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 1.2e-51 206.8 133 65.4
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 3.5e-51 205.3 128 67.2
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 4.6e-51 204.9 139 64.0
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 7.9e-51 204.1 121 71.9
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 1.0e-50 203.8 140 62.9
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 1.3e-50 203.4 133 64.7
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 2.3e-50 202.6 125 68.0
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 3.9e-50 201.8 136 72.1
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 6.7e-50 201.1 132 65.9
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 4.3e-49 198.4 121 70.2
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 7.4e-49 197.6 130 63.8
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 9.7e-49 197.2 113 73.5
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.3e-48 196.8 126 66.7
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 1.3e-48 196.8 131 67.2
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 9.0e-47 190.7 139 60.4
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 1.2e-46 190.3 133 63.2
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 1.5e-46 189.9 129 64.3
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.0e-45 187.2 136 58.8
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.5e-44 182.6 136 61.0
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 5.5e-44 181.4 129 60.5
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 1.0e-42 177.2 106 71.7
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 2.3e-42 176.0 96 78.1
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 7.4e-41 171.0 129 58.9
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 9.7e-41 170.6 100 72.0
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 8.2e-40 167.5 129 58.1
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.5e-38 163.3 128 59.4
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 6.5e-37 157.9 96 69.8
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 8.5e-37 157.5 125 59.2
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 2.1e-35 152.9 102 62.7
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.1e-35 151.4 132 56.1
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.4e-31 140.2 86 69.8
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 1.8e-31 139.8 83 74.7
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 4.5e-30 135.2 141 43.3
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.6e-27 125.6 70 71.4
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.4e-26 123.6 74 74.3
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.7e-24 116.7 112 50.9
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.5e-21 104.8 78 57.7
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.5e-21 104.8 63 69.8
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 1.8e-18 96.7 80 53.8


User provided reference genes

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