Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 2.8e-44 181.4 83 100.0
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 6.1e-31 137.1 89 76.4
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 1.6e-26 122.5 84 71.4
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 1.9e-24 115.5 89 64.0
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 2.3e-22 108.6 89 65.2
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 4.8e-20 100.9 87 63.2
arahy.Tifrunner.gnm1.ann1.J5YN7E Arachis hypogaea HOM05D006892 ORTHO05D008592 3.1e-19 98.2 87 63.2
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 1.2e-13 79.7 79 50.6
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 1.5e-13 79.3 84 50.0
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 3.4e-13 78.2 76 51.3
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 4.4e-13 77.8 70 51.4
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 7.5e-13 77.0 80 51.2
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 1.3e-12 76.3 81 50.6
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.7e-12 75.9 70 51.4
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.7e-12 75.9 70 51.4
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 2.8e-12 75.1 71 49.3
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 4.8e-12 74.3 79 49.4
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 8.3e-12 73.6 69 52.2
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 1.8e-11 72.4 82 45.1
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 1.8e-11 72.4 68 45.6
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 2.4e-11 72.0 72 43.1
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 3.1e-11 71.6 76 51.3
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 3.1e-11 71.6 82 47.6
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 5.4e-11 70.9 80 46.2
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 5.4e-11 70.9 81 45.7
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 7.0e-11 70.5 77 46.8
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 9.1e-11 70.1 81 45.7
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 1.2e-10 69.7 82 42.7
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 1.2e-10 69.7 78 43.6
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 2.0e-10 68.9 69 46.4
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.0e-10 68.9 75 40.0
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.0e-10 68.9 75 40.0
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 2.0e-10 68.9 75 40.0
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.0e-10 68.9 81 44.4
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 2.7e-10 68.6 68 42.6
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 3.5e-10 68.2 69 47.8
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 5.9e-10 67.4 78 41.0
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 5.9e-10 67.4 69 46.4
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 5.9e-10 67.4 68 44.1
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 7.7e-10 67.0 79 49.4
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 7.7e-10 67.0 39 66.7
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 1.3e-09 66.2 69 42.0
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.3e-09 66.2 80 35.0
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 1.7e-09 65.9 78 42.3
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.7e-09 65.9 64 48.4
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 1.7e-09 65.9 82 41.5
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 2.2e-09 65.5 71 47.9
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 2.9e-09 65.1 73 45.2
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 2.9e-09 65.1 68 41.2
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 3.8e-09 64.7 83 39.8
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 3.8e-09 64.7 77 45.5
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 6.5e-09 63.9 77 42.9
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 6.5e-09 63.9 77 45.5
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 6.5e-09 63.9 57 47.4
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 1.1e-08 63.2 79 46.8
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.5e-08 62.8 38 63.2
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.5e-08 62.8 69 44.9
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.9e-08 62.4 48 54.2
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 1.9e-08 62.4 48 54.2
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.9e-08 62.4 79 40.5
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.9e-08 62.4 79 40.5
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 1.9e-08 62.4 68 45.6
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 2.5e-08 62.0 77 46.8
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 2.5e-08 62.0 77 46.8
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.5e-08 62.0 71 43.7
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.5e-08 62.0 76 44.7
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.5e-08 62.0 57 45.6
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.2e-08 61.6 77 44.2
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 3.2e-08 61.6 81 43.2
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 3.2e-08 61.6 70 42.9
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 4.2e-08 61.2 74 40.5
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 4.2e-08 61.2 74 40.5
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 4.2e-08 61.2 75 42.7
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 4.2e-08 61.2 39 66.7
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 4.2e-08 61.2 71 43.7
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 5.5e-08 60.8 53 50.9
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 5.5e-08 60.8 74 40.5
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 7.2e-08 60.5 86 39.5
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 7.2e-08 60.5 71 42.3
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 9.4e-08 60.1 44 59.1
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 9.4e-08 60.1 83 41.0
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 9.4e-08 60.1 71 40.8
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 1.2e-07 59.7 44 54.5
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 1.2e-07 59.7 71 42.3
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.2e-07 59.7 71 42.3
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.2e-07 59.7 71 42.3
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 1.2e-07 59.7 82 36.6
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.2e-07 59.7 56 48.2
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.6e-07 59.3 84 38.1
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 3.6e-07 58.2 74 40.5
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 3.6e-07 58.2 56 44.6
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 4.7e-07 57.8 65 41.5
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 8.0e-07 57.0 82 40.2
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.0e-06 56.6 38 60.5
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 1.0e-06 56.6 54 46.3
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.4e-06 56.2 82 40.2
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.8e-06 55.8 83 39.8
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 1.8e-06 55.8 38 47.4
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 1.8e-06 55.8 74 39.2
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.8e-06 55.8 110 33.6
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 4.0e-06 54.7 38 50.0
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 5.2e-06 54.3 79 38.0
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 6.8e-06 53.9 38 52.6
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 6.8e-06 53.9 78 38.5


User provided reference genes

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