Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 2.8e-255 884.8 452 100.0
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.0e-244 849.7 456 95.6
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 6.1e-218 760.8 456 84.2
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.7e-212 742.7 451 83.1
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 2.6e-200 702.2 462 76.6
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 3.7e-199 698.4 462 76.4
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 6.4e-199 697.6 462 76.8
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 1.3e-191 673.3 461 74.8
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 3.4e-160 568.9 457 65.4
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 4.5e-160 568.5 472 62.3
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 9.9e-160 567.4 472 61.0
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 9.9e-160 567.4 464 61.4
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 2.2e-159 566.2 466 63.1
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 6.4e-159 564.7 472 62.9
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.2e-157 560.5 464 62.3
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 3.5e-157 558.9 472 61.4
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 7.9e-157 557.8 466 63.1
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 1.0e-156 557.4 465 60.4
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 1.8e-156 556.6 460 64.6
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 3.0e-156 555.8 463 60.5
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 8.7e-156 554.3 458 61.4
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 1.1e-155 553.9 455 63.3
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 1.9e-155 553.1 471 58.8
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 3.3e-155 552.4 454 63.9
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 3.3e-155 552.4 466 61.6
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 5.6e-155 551.6 473 60.9
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 7.4e-155 551.2 466 61.2
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 1.6e-154 550.1 467 58.7
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.6e-154 550.1 462 61.0
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 2.1e-154 549.7 472 60.6
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.8e-154 549.3 469 61.0
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 3.7e-154 548.9 464 61.9
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.7e-154 548.9 468 61.3
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.8e-154 548.5 469 61.0
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.1e-153 547.4 463 61.1
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 1.4e-153 547.0 466 60.1
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.1e-153 545.8 463 60.9
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.0e-153 545.4 463 60.9
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 3.4e-152 542.3 469 58.4
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 9.9e-152 540.8 470 59.4
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 9.9e-152 540.8 472 60.2
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 9.9e-152 540.8 476 59.5
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 9.9e-152 540.8 448 60.0
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.3e-151 540.4 456 59.6
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.7e-151 540.0 467 58.2
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 2.2e-151 539.7 472 59.3
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 2.2e-151 539.7 468 59.0
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 4.9e-151 538.5 450 61.8
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 6.4e-151 538.1 439 62.2
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.9e-150 536.6 468 58.8
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 2.4e-150 536.2 452 60.0
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 3.2e-150 535.8 462 58.2
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 3.2e-150 535.8 469 58.8
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.7e-149 532.7 464 56.7
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 6.0e-149 531.6 464 59.9
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.0e-148 530.8 464 59.9
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 1.3e-148 530.4 445 60.9
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 2.3e-148 529.6 469 59.5
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.3e-148 529.6 466 59.4
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 3.9e-148 528.9 473 58.8
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 5.1e-148 528.5 452 60.2
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 6.7e-148 528.1 463 56.2
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 6.7e-148 528.1 454 61.0
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 8.7e-148 527.7 468 58.8
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.1e-147 527.3 464 59.3
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.5e-147 526.9 450 57.8
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.5e-147 526.9 463 56.6
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 9.6e-147 524.2 455 60.0
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 5.3e-145 518.5 462 58.0
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 2.0e-144 516.5 453 57.8
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 4.5e-144 515.4 486 56.2
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 5.8e-144 515.0 450 58.7
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.8e-143 512.3 451 56.1
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 4.9e-143 511.9 456 57.7
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.6e-141 506.9 476 55.7
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 4.6e-141 505.4 453 58.3
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 1.5e-139 500.4 464 56.0
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.3e-138 497.3 468 55.3
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.6e-138 496.9 472 54.7
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 3.7e-138 495.7 452 58.0
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.2e-138 494.6 466 55.4
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 5.3e-137 491.9 444 56.8
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 1.5e-136 490.3 465 54.4
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 2.6e-136 489.6 447 55.9
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 4.5e-136 488.8 451 54.8
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 1.7e-135 486.9 464 54.3
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 2.2e-135 486.5 447 55.7
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 5.0e-135 485.3 447 55.5
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 5.0e-135 485.3 464 55.2
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 8.5e-135 484.6 451 53.9
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.1e-134 484.2 473 53.5
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.4e-134 483.8 450 53.8
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 3.2e-134 482.6 462 55.0
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 5.5e-134 481.9 451 53.7
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 5.5e-134 481.9 447 55.0
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.2e-133 480.7 448 53.6
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-133 480.3 447 54.8
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.6e-133 480.3 449 54.3
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 6.1e-133 478.4 451 54.3
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 6.1e-133 478.4 462 52.4
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 1.4e-132 477.2 451 54.1
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.4e-132 477.2 458 53.1
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.8e-132 476.9 449 54.1
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 3.0e-132 476.1 449 53.9
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 2.5e-131 473.0 458 53.1
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 3.3e-131 472.6 449 53.5
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 5.7e-131 471.9 474 52.3
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 6.3e-130 468.4 449 53.5
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 6.3e-130 468.4 449 53.5
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 8.2e-130 468.0 453 53.2
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 6.9e-129 464.9 455 52.7
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 6.9e-129 464.9 445 52.8
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 9.1e-129 464.5 465 54.4
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 5.9e-128 461.8 458 52.0
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.3e-127 460.7 452 52.7
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 5.0e-127 458.8 448 53.3
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.1e-126 457.6 442 52.7
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.2e-126 454.9 467 51.0
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 9.4e-126 454.5 465 52.3
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 2.7e-125 453.0 428 53.3
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 7.9e-125 451.4 446 51.6
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 1.0e-124 451.1 446 52.2
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.4e-124 450.7 442 52.0
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 1.4e-124 450.7 410 53.7
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 3.9e-124 449.1 469 51.4
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 8.8e-124 448.0 446 52.0
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 8.8e-124 448.0 397 55.7
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.0e-123 446.8 467 50.5
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 3.3e-123 446.0 446 54.0
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 3.3e-123 446.0 446 54.0
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 5.7e-123 445.3 446 51.1
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 5.7e-123 445.3 446 51.1
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 7.4e-123 444.9 447 51.9
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.7e-122 443.7 466 51.7
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 2.6e-120 436.4 446 51.8
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 5.9e-120 435.3 469 47.5
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 7.7e-120 434.9 446 51.8
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 8.8e-116 421.4 407 52.8
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 7.0e-113 411.8 383 52.5
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.5e-107 394.0 453 47.9
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 8.2e-106 388.3 427 48.2
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 4.1e-105 386.0 326 60.7
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 4.1e-105 386.0 326 60.7
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 7.0e-105 385.2 462 47.0
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 8.0e-101 371.7 452 45.8
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 4.0e-100 369.4 427 46.6
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 3.3e-94 349.7 435 42.8
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.4e-89 333.6 459 40.7
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 5.9e-88 328.9 447 44.5
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.3e-87 327.8 441 41.0
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-86 324.3 450 42.7
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.9e-86 323.9 443 41.8
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.6e-86 322.4 442 41.0
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.7e-82 309.7 424 40.3
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 3.7e-74 283.1 225 67.1
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.4e-65 254.6 343 46.4
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.6e-63 245.7 331 40.8
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-57 227.6 203 58.6
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 2.4e-57 227.3 203 58.6
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.0e-55 221.9 215 53.0
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 1.1e-52 211.8 202 55.0
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 6.4e-50 202.6 165 61.8
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.8e-44 184.5 212 48.1
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 2.5e-33 147.5 138 54.3
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 7.9e-32 142.5 167 53.3
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 4.0e-28 130.2 291 33.0
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 7.9e-24 115.9 293 31.7
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.1e-20 105.5 123 49.6
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 3.2e-17 94.0 88 55.7
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 3.0e-15 87.4 90 53.3
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 3.0e-07 60.8 107 37.4


User provided reference genes

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