Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 0.0e+00 1227.6 613 100.0
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 0.0e+00 1136.3 613 93.6
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 2.6e-304 1048.1 620 84.7
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 4.9e-303 1043.9 620 85.2
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.5e-280 969.1 624 78.7
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 2.0e-272 942.2 626 77.6
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 4.1e-265 917.9 626 75.9
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 2.0e-264 915.6 626 75.1
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 1.6e-261 906.0 625 75.4
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 9.1e-257 890.2 620 72.1
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 3.4e-256 888.3 618 73.5
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 2.8e-250 868.6 621 72.3
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.1e-222 776.9 559 70.7
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 1.6e-221 773.1 625 65.0
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 8.0e-221 770.8 627 63.5
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 7.0e-217 757.7 628 61.8
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 7.8e-216 754.2 625 62.4
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 1.0e-215 753.8 622 63.2
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 1.3e-215 753.4 628 61.6
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 7.3e-214 747.7 623 62.8
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.2e-213 746.9 628 62.9
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 1.3e-210 736.9 632 62.3
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 2.2e-210 736.1 628 61.6
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 3.7e-210 735.3 621 63.1
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 8.3e-210 734.2 631 62.4
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.1e-209 733.8 637 60.9
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 9.2e-209 730.7 625 61.3
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 1.6e-208 729.9 620 62.9
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 7.3e-206 721.1 625 59.0
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 4.0e-204 715.3 622 60.1
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 8.9e-204 714.1 625 60.8
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 2.0e-203 713.0 630 60.5
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 2.9e-202 709.1 625 60.2
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 6.4e-202 708.0 665 58.0
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.4e-201 706.8 627 60.6
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 1.4e-201 706.8 610 61.0
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 5.4e-201 704.9 620 60.2
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 1.0e-199 700.7 567 65.3
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 1.9e-198 696.4 622 60.3
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 2.5e-198 696.0 628 59.2
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 9.5e-198 694.1 620 59.2
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 1.6e-197 693.3 615 60.2
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 2.3e-196 689.5 631 57.1
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.5e-195 686.8 611 59.7
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 1.1e-193 680.6 629 58.2
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.2e-193 679.1 667 55.5
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 5.4e-193 678.3 617 56.9
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 1.3e-191 673.7 626 57.5
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 1.8e-188 663.3 630 56.5
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 3.1e-188 662.5 626 55.9
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 4.0e-188 662.1 642 55.8
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 6.8e-188 661.4 632 56.3
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 3.4e-187 659.1 629 56.4
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 2.9e-186 656.0 624 55.4
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.9e-186 656.0 578 60.4
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 4.9e-186 655.2 630 55.2
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 6.0e-184 648.3 618 56.1
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.3e-183 647.1 608 56.2
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 1.7e-183 646.7 628 55.6
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.1e-182 644.0 580 59.8
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 3.3e-182 642.5 609 54.8
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 1.8e-180 636.7 570 60.9
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 1.8e-180 636.7 611 55.0
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 2.0e-179 633.3 631 54.5
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 2.2e-178 629.8 626 54.3
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 6.4e-178 628.2 486 67.5
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 6.4e-178 628.2 619 54.4
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 2.4e-177 626.3 605 56.5
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 4.2e-177 625.5 639 53.7
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 9.3e-177 624.4 644 53.1
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 3.5e-176 622.5 624 53.2
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 2.3e-175 619.8 615 53.7
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 2.3e-175 619.8 621 53.1
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 2.3e-175 619.8 605 53.9
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 3.0e-175 619.4 645 52.6
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 5.1e-175 618.6 528 62.7
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 1.1e-174 617.5 622 54.2
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.1e-174 617.5 628 53.0
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.8e-173 612.8 688 51.7
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 6.2e-173 611.7 609 54.4
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 8.1e-173 611.3 616 53.9
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 1.1e-172 610.9 640 52.7
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.8e-172 610.1 617 52.4
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 3.1e-172 609.4 625 53.4
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 7.6e-171 604.7 619 52.2
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 2.9e-170 602.8 609 53.7
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 2.9e-170 602.8 646 53.4
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 6.4e-170 601.7 584 56.3
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.4e-169 599.7 619 52.7
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 4.2e-169 599.0 615 51.7
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 7.1e-169 598.2 614 50.5
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 7.1e-169 598.2 614 50.5
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 7.1e-169 598.2 635 50.6
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 9.3e-169 597.8 609 53.4
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 2.1e-168 596.7 614 50.3
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.0e-167 594.3 619 51.5
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 1.3e-167 594.0 616 55.7
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 2.3e-167 593.2 634 52.4
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 2.3e-167 593.2 581 55.8
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 2.5e-166 589.7 615 50.1
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 2.5e-166 589.7 615 50.1
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 3.3e-166 589.3 619 50.7
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 2.1e-165 586.6 642 51.9
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.1e-165 586.6 622 51.3
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 2.4e-164 583.2 591 54.5
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 4.0e-164 582.4 583 53.5
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 4.5e-163 578.9 607 52.2
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 5.8e-163 578.6 626 52.6
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 5.5e-161 572.0 535 57.4
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 7.9e-160 568.2 491 60.1
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 1.0e-159 567.8 634 50.6
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 1.3e-159 567.4 486 60.7
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.0e-159 566.2 592 51.0
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 1.5e-158 563.9 478 61.1
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 7.4e-158 561.6 469 61.4
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.5e-155 553.9 581 52.5
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 2.2e-154 550.1 663 48.9
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 7.2e-153 545.0 514 54.9
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 6.1e-152 542.0 561 52.2
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 8.7e-151 538.1 622 49.2
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 1.7e-146 523.9 527 54.6
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 6.5e-146 521.9 614 48.4
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 5.5e-145 518.8 520 54.8
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 2.2e-141 506.9 522 54.2
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 2.3e-127 460.3 621 45.1
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.3e-127 460.3 421 56.5
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 2.8e-125 453.4 471 53.1
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.9e-122 443.4 495 49.1
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.9e-122 443.4 495 49.1
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 6.5e-122 442.2 628 43.5
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 3.2e-121 439.9 624 43.1
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 8.8e-119 431.8 467 50.1
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 6.3e-117 425.6 549 46.4
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.4e-116 423.7 610 43.9
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 1.6e-115 421.0 694 38.0
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 2.8e-109 400.2 381 55.1
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 2.3e-106 390.6 502 46.0
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.9e-93 347.1 352 55.4
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 3.2e-76 290.4 675 33.5
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.5e-70 271.6 506 35.8
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 3.1e-63 247.3 274 51.5
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 2.4e-52 211.1 426 31.5
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 3.1e-47 194.1 122 71.3
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 2.2e-45 188.0 195 46.7
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 3.9e-26 124.0 182 35.2
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 9.1e-23 112.8 62 82.3
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.4e-18 99.0 161 43.5
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 1.1e-12 79.3 126 40.5
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 7.5e-09 66.6 54 51.9
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-08 64.7 39 69.2


User provided reference genes

Program Settings