Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.2e-100 369.8 185 100.0
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 3.4e-98 361.7 185 96.8
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 8.4e-89 330.5 186 89.2
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 4.1e-88 328.2 186 88.2
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 2.1e-87 325.9 186 87.6
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 2.7e-87 325.5 184 89.1
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 6.0e-87 324.3 186 87.6
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 1.0e-86 323.6 186 87.6
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 1.7e-86 322.8 186 87.1
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.9e-85 319.3 187 86.6
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 9.6e-85 317.0 186 85.5
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 2.1e-84 315.8 192 83.3
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 2.1e-79 299.3 207 75.8
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 2.4e-75 285.8 185 78.4
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 1.2e-71 273.5 186 71.5
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 1.6e-71 273.1 186 72.6
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 3.5e-71 271.9 186 75.3
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.0e-70 270.4 186 74.2
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.5e-69 266.5 178 75.3
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.5e-69 265.8 187 69.5
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.3e-69 265.4 186 69.4
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 9.6e-69 263.8 186 70.4
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 9.6e-69 263.8 186 69.4
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 1.6e-68 263.1 186 72.0
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 2.1e-68 262.7 186 68.8
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 2.1e-68 262.7 186 68.8
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 2.1e-68 262.7 187 71.1
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 2.8e-68 262.3 183 72.1
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 1.5e-66 256.5 186 67.2
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 2.0e-66 256.1 183 69.9
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 2.6e-66 255.8 186 67.2
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.6e-66 255.8 186 67.7
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 3.4e-66 255.4 186 68.8
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 3.4e-66 255.4 186 68.3
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 4.5e-66 255.0 185 67.0
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 4.5e-66 255.0 187 67.9
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 9.9e-66 253.8 186 68.3
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 9.9e-66 253.8 186 68.3
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 9.9e-66 253.8 186 68.3
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 9.9e-66 253.8 186 68.3
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 9.9e-66 253.8 186 68.3
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 1.7e-65 253.1 186 68.3
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 1.7e-65 253.1 187 65.2
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 2.2e-65 252.7 187 65.8
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 3.8e-65 251.9 187 65.2
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 6.4e-65 251.1 186 65.6
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 6.4e-65 251.1 186 66.1
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 6.4e-65 251.1 186 66.1
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 8.4e-65 250.8 182 67.0
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 8.4e-65 250.8 182 66.5
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 1.1e-64 250.4 183 66.1
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.4e-64 250.0 186 65.1
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 1.4e-64 250.0 186 66.1
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.9e-64 249.6 182 66.5
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 2.4e-64 249.2 183 66.1
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 7.1e-64 247.7 185 64.3
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.2e-63 246.9 187 64.2
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 2.1e-63 246.1 182 66.5
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.7e-63 245.7 186 65.6
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 2.7e-63 245.7 185 64.3
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 2.7e-63 245.7 186 67.7
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 4.6e-63 245.0 186 68.3
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 6.0e-63 244.6 184 64.1
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.8e-62 243.0 166 70.5
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 2.3e-62 242.7 187 65.2
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 3.0e-62 242.3 187 65.2
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 3.0e-62 242.3 183 65.0
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 5.1e-62 241.5 187 64.2
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 8.7e-62 240.7 187 63.6
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 8.7e-62 240.7 182 65.9
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.1e-61 240.4 186 63.4
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 3.3e-61 238.8 182 63.2
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 4.3e-61 238.4 182 64.8
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 9.6e-61 237.3 186 62.4
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 9.6e-61 237.3 185 63.8
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 2.1e-60 236.1 185 63.8
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 2.1e-60 236.1 183 65.0
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 2.1e-60 236.1 180 64.4
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 2.8e-60 235.7 182 64.3
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 8.1e-60 234.2 165 69.7
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 1.4e-59 233.4 182 63.7
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 2.4e-59 232.6 181 63.5
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 3.1e-59 232.3 180 63.9
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 5.3e-59 231.5 182 60.4
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 3.4e-58 228.8 181 63.0
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 1.3e-57 226.9 185 64.3
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.3e-57 226.9 185 60.0
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 2.9e-57 225.7 182 61.0
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 6.5e-57 224.6 186 60.8
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 3.2e-56 222.2 185 59.5
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 4.2e-56 221.9 182 58.8
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 7.1e-56 221.1 186 58.6
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 1.2e-55 220.3 185 57.8
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 2.7e-55 219.2 185 57.8
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 3.5e-55 218.8 182 57.7
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 1.3e-54 216.9 186 58.6
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 2.3e-54 216.1 164 65.2
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 5.1e-54 214.9 191 58.6
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 5.1e-54 214.9 150 71.3
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 6.7e-54 214.5 191 57.6
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 6.7e-54 214.5 191 57.6
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 8.7e-54 214.2 191 56.5
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 1.1e-53 213.8 183 58.5
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.5e-53 213.4 183 57.9
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 2.5e-53 212.6 191 57.1
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 9.6e-53 210.7 183 58.5
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.6e-52 209.9 189 57.1
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 6.3e-52 208.0 148 66.9
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 4.2e-48 195.3 200 56.5
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 2.1e-47 193.0 149 61.7
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 2.1e-47 193.0 183 56.8
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.3e-46 189.5 187 55.1
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 1.5e-45 186.8 150 60.7
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.9e-45 186.4 203 50.2
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 5.7e-45 184.9 183 49.7
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.6e-44 183.3 183 49.2
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 4.8e-44 181.8 168 56.5
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 5.3e-43 178.3 185 55.1
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 6.9e-43 177.9 183 48.1
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 2.6e-42 176.0 166 53.6
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 5.9e-42 174.9 182 46.7
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 6.5e-41 171.4 162 57.4
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 8.5e-41 171.0 148 58.8
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 3.3e-37 159.1 189 48.7
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 9.7e-37 157.5 183 45.9
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.4e-35 153.7 183 45.4
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.6e-34 149.4 112 62.5
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 1.3e-33 147.1 185 38.9
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 1.1e-32 144.1 103 66.0
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 4.5e-26 122.1 159 44.7
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 8.0e-23 111.3 117 48.7
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.0e-22 110.9 98 58.2
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 7.5e-21 104.8 134 45.5
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 9.7e-21 104.4 104 52.9
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 7.7e-18 94.7 71 63.4
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 1.3e-17 94.0 62 71.0
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 2.9e-17 92.8 188 30.3
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 1.5e-16 90.5 167 29.9
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 5.5e-16 88.6 83 62.7
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 5.7e-13 78.6 72 51.4
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.2e-10 70.9 174 28.2
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 2.1e-07 60.1 34 82.4


User provided reference genes

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