Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 3.9e-232 807.7 406 100.0
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 5.3e-205 717.6 408 90.9
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 8.5e-195 683.7 406 85.0
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 9.4e-194 680.2 406 85.0
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 6.6e-171 604.4 406 76.4
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 1.5e-170 603.2 416 76.2
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 1.1e-168 597.0 406 75.6
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 2.0e-167 592.8 406 75.1
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 6.6e-163 577.8 410 74.1
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 1.1e-162 577.0 434 71.0
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 1.2e-159 567.0 408 72.8
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 3.9e-131 472.2 398 60.6
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 3.3e-130 469.2 406 62.8
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 3.7e-129 465.7 405 59.8
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 4.8e-129 465.3 407 59.5
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 1.1e-128 464.2 411 58.6
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 9.0e-128 461.1 402 59.0
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 7.6e-127 458.0 402 59.2
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 2.9e-126 456.1 404 59.4
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 4.9e-126 455.3 407 58.0
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 1.1e-125 454.1 404 59.7
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 3.2e-125 452.6 407 59.2
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 5.5e-125 451.8 405 59.0
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 7.1e-125 451.4 412 59.2
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 2.3e-123 446.4 411 57.4
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 3.7e-121 439.1 410 58.3
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 1.8e-120 436.8 401 58.9
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 2.4e-120 436.4 448 53.3
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 2.4e-120 436.4 410 58.0
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 5.3e-120 435.3 403 59.6
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 3.4e-119 432.6 404 55.7
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 4.5e-119 432.2 408 55.9
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 5.8e-119 431.8 408 56.4
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 5.8e-119 431.8 412 57.0
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 7.6e-119 431.4 406 56.2
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 2.9e-118 429.5 407 56.5
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 4.9e-118 428.7 420 53.8
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 3.2e-117 426.0 405 55.8
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 3.2e-117 426.0 407 59.0
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 4.2e-117 425.6 412 55.6
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 5.5e-117 425.2 402 55.7
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 7.1e-117 424.9 412 55.6
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 7.1e-117 424.9 402 56.5
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 9.3e-117 424.5 441 52.8
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 2.5e-114 416.4 411 54.5
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 3.3e-114 416.0 403 55.8
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 7.4e-114 414.8 457 52.1
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 7.4e-114 414.8 359 61.3
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 1.6e-113 413.7 475 48.2
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 2.2e-113 413.3 413 54.0
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 2.4e-112 409.8 405 55.8
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 3.1e-112 409.5 402 55.0
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 1.5e-111 407.1 409 54.5
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 2.0e-111 406.8 369 58.3
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 4.5e-111 405.6 426 53.8
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 1.7e-110 403.7 420 50.7
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 7.9e-108 394.8 367 59.1
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 1.3e-105 387.5 530 43.8
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 1.0e-102 377.9 415 52.0
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 4.2e-101 372.5 407 51.1
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 2.1e-100 370.2 409 49.9
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 5.1e-99 365.5 395 53.2
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 8.8e-99 364.8 420 50.2
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 1.1e-98 364.4 410 50.0
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 7.4e-98 361.7 404 50.7
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 9.7e-98 361.3 285 63.5
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 3.1e-96 356.3 299 59.2
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 5.3e-96 355.5 287 62.0
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 1.7e-94 350.5 309 62.8
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 3.8e-94 349.4 287 61.3
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 5.5e-93 345.5 429 47.3
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 4.7e-92 342.4 405 47.9
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 9.7e-90 334.7 452 47.1
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 6.3e-89 332.0 315 57.8
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 4.1e-88 329.3 326 56.1
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 5.9e-87 325.5 403 48.1
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 5.0e-86 322.4 313 57.2
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 6.5e-86 322.0 313 58.1
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 1.1e-85 321.2 308 56.2
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 6.1e-84 315.5 310 54.2
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 8.0e-84 315.1 312 56.7
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 1.0e-83 314.7 328 56.4
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.3e-83 313.5 304 56.6
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.3e-83 313.5 309 55.7
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 2.0e-82 310.5 429 42.7
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 1.1e-80 304.7 442 42.5
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 4.1e-80 302.8 445 43.1
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 1.2e-79 301.2 312 53.8
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.9e-79 298.9 328 52.4
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 8.0e-76 288.5 315 54.3
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 1.8e-75 287.3 310 53.9
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 1.2e-74 284.6 574 36.1
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 2.2e-73 280.4 425 44.2
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 3.7e-73 279.6 274 54.0
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 4.8e-73 279.3 412 42.5
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 5.9e-71 272.3 463 37.4
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 1.3e-70 271.2 292 51.7
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 4.4e-66 256.1 301 47.8
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.3e-65 254.6 413 41.4
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 2.3e-62 243.8 300 44.3
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 5.8e-58 229.2 293 46.4
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 6.4e-57 225.7 314 43.3
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.4e-56 223.8 186 62.9
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 3.3e-53 213.4 266 40.2
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 5.6e-53 212.6 255 46.7
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 3.7e-49 199.9 397 37.0
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 1.3e-46 191.4 181 54.1
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 3.9e-46 189.9 288 40.6
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 4.3e-45 186.4 237 45.1
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 4.4e-34 149.8 356 33.7
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 5.8e-34 149.4 92 77.2
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 5.8e-34 149.4 101 69.3
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 8.4e-33 145.6 284 34.2
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 3.1e-27 127.1 85 69.4
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 2.9e-25 120.6 76 72.4
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 2.3e-22 110.9 88 64.8
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 3.6e-20 103.6 115 47.8
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 4.0e-19 100.1 65 70.8
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 1.0e-14 85.5 217 32.7
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 1.0e-14 85.5 87 49.4
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 1.8e-14 84.7 65 58.5
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 1.8e-14 84.7 230 30.4
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 3.9e-14 83.6 63 61.9
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.5e-08 64.3 68 44.1
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.6e-07 61.6 88 37.5
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 2.7e-07 60.8 58 55.2


User provided reference genes

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