Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G014700 Glycine max HOM05D007989 ORTHO05D010087 1.3e-100 369.8 192 100.0
Glyma.11G242400 Glycine max HOM05D007989 ORTHO05D010087 3.1e-78 295.4 195 83.6
Phvul.001G254200 Phaseolus vulgaris HOM05D007989 ORTHO05D010087 2.8e-71 272.3 195 76.9
VMungo1383G0535 Vigna mungo HOM05D007989 ORTHO05D010087 2.6e-69 265.8 204 73.0
Medtr3g086760 Medicago truncatula HOM05D007989 ORTHO05D010087 4.5e-61 238.4 211 64.0
Lj6g0026253 Lotus japonicus HOM05D007989 ORTHO05D010087 1.4e-57 226.9 193 69.4
TPR.G30536 Trifolium pratense HOM05D007989 ORTHO05D010087 9.1e-54 214.2 196 63.8
Ca_30637_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 1.6e-50 203.4 201 60.7
arahy.Tifrunner.gnm1.ann1.92LXSJ Arachis hypogaea HOM05D007989 ORTHO05D010087 6.3e-47 191.4 211 55.5
Psat1g083960 Pisum sativum HOM05D007989 ORTHO05D010087 1.8e-46 189.9 192 60.4
arahy.Tifrunner.gnm1.ann1.FU6RJX Arachis hypogaea HOM05D007989 ORTHO05D010087 2.1e-42 176.4 204 52.9
Lalb_Chr08g0230941 Lupinus albus HOM05D007989 ORTHO05D010087 4.1e-38 162.2 142 64.8
Cfa002588 Carpinus fangiana HOM05D007989 ORTHO05D010087 2.8e-31 139.4 175 49.1
QL06p047951 Quercus lobata HOM05D007989 ORTHO05D010087 4.8e-31 138.7 192 49.5
COL.COLO4_27300 Corchorus olitorius HOM05D007989 ORTHO05D010087 2.4e-30 136.3 188 46.3
Haze_24825 Corylus avellana HOM05D007989 ORTHO05D010087 1.6e-29 133.7 177 49.2
Haze_24830 Corylus avellana HOM05D007989 ORTHO05D010087 1.6e-29 133.7 177 49.2
Dinv08871 Davidia involucrata HOM05D007989 ORTHO05D010087 7.7e-29 131.3 180 49.4
Thecc.01G095100 Theobroma cacao HOM05D007989 ORTHO05D010087 3.8e-28 129.0 202 45.0
TWI53G0073 Tripterygium wilfordii HOM05D007989 ORTHO05D010087 3.2e-27 125.9 175 46.9
Manes.13G097300 Manihot esculenta HOM05D007989 ORTHO05D010087 4.2e-27 125.6 185 48.1
Prupe.6G193900 Prunus persica HOM05D007989 ORTHO05D010087 4.2e-27 125.6 190 48.4
CiPaw.04G104100 Carya illinoinensis HOM05D007989 ORTHO05D010087 5.5e-27 125.2 185 44.9
RcHm_v2.0_Chr2g0112271 Rosa chinensis HOM05D007989 ORTHO05D010087 9.4e-27 124.4 172 50.6
MD15G1317900 Malus domestica HOM05D007989 ORTHO05D010087 1.6e-26 123.6 185 46.5
Ca_16505_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 2.1e-26 123.2 145 55.9
CiPaw.03G146300 Carya illinoinensis HOM05D007989 ORTHO05D010087 2.7e-26 122.9 186 47.3
MD01G1036700 Malus domestica HOM05D007989 ORTHO05D010087 2.7e-26 122.9 182 45.1
Duzib147G0239 Durio zibethinus HOM05D007989 ORTHO05D010087 6.1e-26 121.7 179 44.7
FvH4_1g20210 Fragaria vesca HOM05D007989 ORTHO05D010087 8.0e-26 121.3 170 50.6
FAN19G2348 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.0e-25 120.9 170 50.6
Atru.chr3.1338 Acer truncatum HOM05D007989 ORTHO05D010087 3.0e-25 119.4 199 42.7
FAN23G0861 Fragaria x ananassa HOM05D007989 ORTHO05D010087 6.8e-25 118.2 170 49.4
FAN28G0040 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.5e-24 117.1 159 50.3
FAN26G0087 Fragaria x ananassa HOM05D007989 ORTHO05D010087 2.0e-24 116.7 170 48.8
Nitab4.5_0005930g0030 Nicotiana tabacum HOM05D007989 ORTHO05D010087 2.0e-24 116.7 182 42.3
Potri.005G071400 Populus trichocarpa HOM05D007989 ORTHO05D010087 4.4e-24 115.5 205 40.0
Rhsim10G0168900 Rhododendron simsii HOM05D007989 ORTHO05D010087 5.7e-24 115.2 127 52.8
Actinidia06535 Actinidia chinensis HOM05D007989 ORTHO05D010087 1.3e-23 114.0 141 51.8
CANSAT01G0464 Cannabis sativa HOM05D007989 ORTHO05D010087 1.3e-23 114.0 188 42.0
Potri.007G097400 Populus trichocarpa HOM05D007989 ORTHO05D010087 2.2e-23 113.2 205 39.0
Gohir.A02G130000 Gossypium hirsutum HOM05D007989 ORTHO05D010087 8.3e-23 111.3 194 41.8
Sabra05G0058400 Salix brachista HOM05D007989 ORTHO05D010087 1.1e-22 110.9 207 39.6
Ciclev10026467m.g Citrus clementina HOM05D007989 ORTHO05D010087 1.4e-22 110.5 165 42.4
Gorai.003G041700 Gossypium raimondii HOM05D007989 ORTHO05D010087 2.4e-22 109.8 194 41.2
Gohir.D03G040900 Gossypium hirsutum HOM05D007989 ORTHO05D010087 5.4e-22 108.6 193 40.4
Nitab4.5_0000241g0120 Nicotiana tabacum HOM05D007989 ORTHO05D010087 5.4e-22 108.6 196 38.3
TAR628G0250 Trochodendron aralioides HOM05D007989 ORTHO05D010087 5.4e-22 108.6 182 41.8
Cpa.g.sc55.66 Carica papaya HOM05D007989 ORTHO05D010087 7.0e-22 108.2 185 40.5
Sabra07G0080700 Salix brachista HOM05D007989 ORTHO05D010087 7.7e-21 104.8 126 49.2
vmacro12990 Vaccinium macrocarpon HOM05D007989 ORTHO05D010087 1.7e-20 103.6 134 49.3
CAN.G905.6 Capsicum annuum HOM05D007989 ORTHO05D010087 2.9e-20 102.8 163 42.3
PSO541G3922 Papaver somniferum HOM05D007989 ORTHO05D010087 2.9e-20 102.8 179 40.8
MBI06_g03317_MAGBIO Magnolia biondii HOM05D007989 ORTHO05D010087 2.5e-19 99.8 181 39.2
PSO675G2967 Papaver somniferum HOM05D007989 ORTHO05D010087 3.3e-19 99.4 184 41.3
Nn1g05466 Nelumbo nucifera HOM05D007989 ORTHO05D010087 7.2e-19 98.2 193 39.4
Aqoxy6G00707 Aquilegia oxysepala HOM05D007989 ORTHO05D010087 1.2e-18 97.4 179 39.7
EL10Ac6g14814 Beta vulgaris HOM05D007989 ORTHO05D010087 2.1e-18 96.7 189 37.6
AUR62027199 Chenopodium quinoa HOM05D007989 ORTHO05D010087 1.2e-16 90.9 184 37.5
Sopen11g005100 Solanum pennellii HOM05D007989 ORTHO05D010087 3.4e-16 89.4 185 36.2
Hma1.2p1_0019F.1_g013880 Hydrangea macrophylla HOM05D007989 ORTHO05D010087 1.7e-15 87.0 115 47.8
Solyc11g010320.1 Solanum lycopersicum HOM05D007989 ORTHO05D010087 1.7e-15 87.0 182 36.8
PGSC0003DMG401016146 Solanum tuberosum HOM05D007989 ORTHO05D010087 2.2e-15 86.7 185 37.3
Migut.H02322 Erythranthe guttata HOM05D007989 ORTHO05D010087 4.1e-14 82.4 114 43.9
PGR004G2401 Punica granatum HOM05D007989 ORTHO05D010087 2.7e-13 79.7 158 39.9
CsaV3_4G009020 Cucumis sativus L. HOM05D007989 ORTHO05D010087 1.3e-12 77.4 163 36.8
ClCG10G008400 Citrullus lanatus HOM05D007989 ORTHO05D010087 6.6e-12 75.1 119 43.7
MELO3C018999.2 Cucumis melo HOM05D007989 ORTHO05D010087 4.3e-11 72.4 165 35.2
Sc16g0000320 Simmondsia chinensis HOM05D007989 ORTHO05D010087 4.3e-11 72.4 142 37.3
Oeu002158.1 Olea europaea HOM05D007989 ORTHO05D010087 1.6e-10 70.5 117 40.2
Aa31LG1G27930 Aethionema arabicum HOM05D002476 ORTHO05D002652 5.2e-09 65.5 116 39.7
Zm00001eb033460 Zea mays HOM05D007989 ORTHO05D010087 6.8e-09 65.1 158 36.7
BcaC02g12672 Brassica carinata HOM05D002476 ORTHO05D002652 1.2e-08 64.3 145 34.5
BcaC02g07040 Brassica carinata HOM05D002476 ORTHO05D002652 1.5e-08 63.9 116 39.7
BcaNung06659 Brassica carinata HOM05D002476 ORTHO05D002652 1.5e-08 63.9 116 39.7
Aa31LG1G10610 Aethionema arabicum HOM05D002476 ORTHO05D002652 2.0e-08 63.5 126 37.3
A04p34460 Brassica napus HOM05D002476 ORTHO05D002652 2.6e-08 63.2 118 40.7
BraA04t18904Z Brassica rapa HOM05D002476 ORTHO05D002652 2.6e-08 63.2 118 40.7
Thhalv10001490m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 5.8e-08 62.0 117 40.2
A09p69030 Brassica napus HOM05D002476 ORTHO05D002652 7.5e-08 61.6 146 34.2
BolC4t28710H Brassica oleracea HOM05D002476 ORTHO05D002652 9.8e-08 61.2 117 38.5
THA.LOC104817374 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 9.8e-08 61.2 176 29.5
AT2G46550 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 1.7e-07 60.5 123 39.8
BcaC02g07017 Brassica carinata HOM05D002476 ORTHO05D002652 1.7e-07 60.5 117 38.5
Sed0027218 Sechium edule HOM05D007989 ORTHO05D010087 1.7e-07 60.5 80 50.0
Carub.0004s2927 Capsella rubella HOM05D002476 ORTHO05D002652 2.2e-07 60.1 118 36.4
A05p01220 Brassica napus HOM05D002476 ORTHO05D002652 3.7e-07 59.3 117 37.6
A10p00670 Brassica napus HOM05D002476 ORTHO05D002652 4.9e-07 58.9 126 37.3
BolC8t52874H Brassica oleracea HOM05D002476 ORTHO05D002652 4.9e-07 58.9 130 36.2
BraA05t19123Z Brassica rapa HOM05D002476 ORTHO05D002652 4.9e-07 58.9 117 37.6
BraA10t42344Z Brassica rapa HOM05D002476 ORTHO05D002652 4.9e-07 58.9 137 35.0
HPP92_002319 Vanilla planifolia HOM05D007989 ORTHO05D010087 4.9e-07 58.9 156 35.3
BraA09t42240Z Brassica rapa HOM05D002476 ORTHO05D002652 6.4e-07 58.5 129 35.7
AL1G11220 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 8.3e-07 58.2 131 35.9
AL4G45980 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 1.1e-06 57.8 125 38.4
C04p72220 Brassica napus HOM05D002476 ORTHO05D002652 1.1e-06 57.8 121 38.8
Thhalv10008123m.g Eutrema salsugineum HOM05D002476 ORTHO05D002652 1.1e-06 57.8 143 33.6
Sp1g01040 Schrenkiella parvula HOM05D002476 ORTHO05D002652 1.1e-06 57.8 143 32.9
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.4e-06 57.4 119 38.7
C05p00710 Brassica napus HOM05D002476 ORTHO05D002652 1.4e-06 57.4 125 35.2
CARHR141890 Cardamine hirsuta HOM05D002476 ORTHO05D002652 1.9e-06 57.0 119 35.3
C04p01370 Brassica napus HOM05D002476 ORTHO05D002652 2.4e-06 56.6 119 37.8
BolC4t21790H Brassica oleracea HOM05D002476 ORTHO05D002652 2.4e-06 56.6 119 37.8
PSO063G3833 Papaver somniferum HOM05D002476 ORTHO05D002652 2.4e-06 56.6 105 38.1
PSO170G6198 Papaver somniferum HOM05D002476 ORTHO05D002652 2.4e-06 56.6 105 38.1
THA.LOC104825884 Tarenaya hassleriana HOM05D002476 ORTHO05D002652 5.4e-06 55.5 157 31.8
CARHR001220 Cardamine hirsuta HOM05D002476 ORTHO05D002652 7.0e-06 55.1 131 34.4
Os08g0483100 Oryza sativa ssp. japonica HOM05D007989 ORTHO05D010087 7.0e-06 55.1 132 35.6
Sp4g28600 Schrenkiella parvula HOM05D002476 ORTHO05D002652 7.0e-06 55.1 125 36.0


User provided reference genes

Program Settings