Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G011400 Glycine max HOM05D007119 ORTHO05D009220 4.8e-266 920.6 465 100.0
Glyma.11G245800 Glycine max HOM05D007119 ORTHO05D009220 6.2e-258 893.6 465 96.3
Phvul.001G257500 Phaseolus vulgaris HOM05D007119 ORTHO05D009220 2.8e-242 841.6 465 90.1
VMungo1383G3713 Vigna mungo HOM05D007119 ORTHO05D009220 5.1e-236 820.8 465 87.5
Medtr3g086170 Medicago truncatula HOM05D007119 ORTHO05D009220 3.8e-223 778.1 458 82.5
Lj6g0003042 Lotus japonicus HOM05D007119 ORTHO05D009220 6.1e-221 770.8 461 81.8
TPR.G14230 Trifolium pratense HOM05D007119 ORTHO05D009220 1.4e-220 769.6 473 80.3
Lalb_Chr23g0277791 Lupinus albus HOM05D007119 ORTHO05D009220 8.2e-218 760.4 461 80.9
arahy.Tifrunner.gnm1.ann1.3UY64B Arachis hypogaea HOM05D007119 ORTHO05D009220 2.7e-213 745.3 459 79.7
arahy.Tifrunner.gnm1.ann1.U7Q0BA Arachis hypogaea HOM05D007119 ORTHO05D009220 2.7e-213 745.3 459 79.7
CiPaw.05G175700 Carya illinoinensis HOM05D007119 ORTHO05D009220 4.7e-197 691.4 464 73.5
Manes.13G018700 Manihot esculenta HOM05D007119 ORTHO05D009220 6.1e-197 691.0 463 72.6
Dinv14769 Davidia involucrata HOM05D007119 ORTHO05D009220 1.5e-195 686.4 464 72.4
QL03p055873 Quercus lobata HOM05D007119 ORTHO05D009220 3.4e-195 685.3 463 73.2
Psat5g093400 Pisum sativum HOM05D007119 ORTHO05D009220 3.1e-193 678.7 396 84.1
GSVIVG01010292001 Vitis vinifera HOM05D007119 ORTHO05D009220 1.6e-192 676.4 464 71.6
COL.COLO4_23551 Corchorus olitorius HOM05D007119 ORTHO05D009220 5.0e-191 671.4 455 71.9
TWI36G1063 Tripterygium wilfordii HOM05D007119 ORTHO05D009220 1.5e-190 669.8 466 70.2
Thecc.02G269100 Theobroma cacao HOM05D007119 ORTHO05D009220 1.9e-190 669.5 465 71.2
Duzib248G1022 Durio zibethinus HOM05D007119 ORTHO05D009220 1.2e-189 666.8 463 71.3
Potri.008G181500 Populus trichocarpa HOM05D007119 ORTHO05D009220 1.6e-189 666.4 461 70.3
TAR629G0375 Trochodendron aralioides HOM05D007119 ORTHO05D009220 1.0e-188 663.7 457 71.3
RcHm_v2.0_Chr4g0432041 Rosa chinensis HOM05D007119 ORTHO05D009220 3.0e-188 662.1 465 70.5
Ciclev10031444m.g Citrus clementina HOM05D007119 ORTHO05D009220 1.2e-187 660.2 460 69.6
Actinidia15126 Actinidia chinensis HOM05D007119 ORTHO05D009220 1.7e-186 656.4 464 69.6
CSS0010905 Camellia sinensis var. sinensis HOM05D007119 ORTHO05D009220 1.7e-186 656.4 459 70.2
CANSAT01G1522 Cannabis sativa HOM05D007119 ORTHO05D009220 2.9e-186 655.6 459 70.8
Eucgr.H04699 Eucalyptus grandis HOM05D007119 ORTHO05D009220 4.9e-186 654.8 463 68.7
FvH4_4g24980 Fragaria vesca HOM05D007119 ORTHO05D009220 4.9e-186 654.8 464 69.8
Gohir.D12G151200 Gossypium hirsutum HOM05D007119 ORTHO05D009220 8.3e-186 654.1 450 70.7
Gorai.008G162700 Gossypium raimondii HOM05D007119 ORTHO05D009220 3.2e-185 652.1 450 70.7
vmacro16153 Vaccinium macrocarpon HOM05D007119 ORTHO05D009220 1.0e-183 647.1 514 64.6
Hma1.2p1_0079F.1_g041390 Hydrangea macrophylla HOM05D007119 ORTHO05D009220 1.3e-183 646.7 460 68.9
Haze_12309 Corylus avellana HOM05D007119 ORTHO05D009220 6.6e-183 644.4 533 62.5
Prupe.1G238900 Prunus persica HOM05D007119 ORTHO05D009220 6.6e-183 644.4 450 71.8
Gorai.005G173800 Gossypium raimondii HOM05D007119 ORTHO05D009220 1.5e-182 643.3 462 69.9
Atru.chr11.2204 Acer truncatum HOM05D007119 ORTHO05D009220 7.3e-182 641.0 460 68.7
MD13G1107500 Malus domestica HOM05D007119 ORTHO05D009220 6.1e-181 637.9 451 70.7
Gohir.A03G131100 Gossypium hirsutum HOM05D007119 ORTHO05D009220 1.0e-180 637.1 462 69.3
THA.LOC104825682 Tarenaya hassleriana HOM05D007119 ORTHO05D009220 3.4e-179 632.1 456 66.7
CAN.G49.9 Capsicum annuum HOM05D007119 ORTHO05D009220 5.8e-179 631.3 464 65.9
AL5G14790 Arabidopsis lyrata HOM05D007119 ORTHO05D009220 1.9e-177 626.3 457 65.2
AT3G26090 Arabidopsis thaliana HOM05D007119 ORTHO05D009220 9.2e-177 624.0 457 64.8
Carub.0005s0397 Capsella rubella HOM05D007119 ORTHO05D009220 1.0e-175 620.5 457 64.8
MD16G1107500 Malus domestica HOM05D007119 ORTHO05D009220 1.0e-175 620.5 451 69.2
Sed0010682 Sechium edule HOM05D007119 ORTHO05D009220 2.3e-175 619.4 456 67.8
Sabra08G0138500 Salix brachista HOM05D007119 ORTHO05D009220 3.0e-175 619.0 554 58.5
Aa31LG2G6270 Aethionema arabicum HOM05D007119 ORTHO05D009220 5.6e-174 614.8 458 63.3
A06p42260 Brassica napus HOM05D007119 ORTHO05D009220 1.1e-172 610.5 460 63.9
BraA06t27142Z Brassica rapa HOM05D007119 ORTHO05D009220 1.1e-172 610.5 460 63.9
CsaV3_5G030670 Cucumis sativus L. HOM05D007119 ORTHO05D009220 1.4e-172 610.1 456 66.9
Gohir.A12G146600 Gossypium hirsutum HOM05D007119 ORTHO05D009220 1.4e-172 610.1 459 66.0
Cc11_g16270 Coffea canephora HOM05D007119 ORTHO05D009220 2.3e-172 609.4 464 63.8
BcaC06g33928 Brassica carinata HOM05D007119 ORTHO05D009220 6.8e-172 607.8 460 63.7
Nn3g16605 Nelumbo nucifera HOM05D007119 ORTHO05D009220 1.5e-171 606.7 456 65.8
BcaC06g31092 Brassica carinata HOM05D007119 ORTHO05D009220 3.4e-171 605.5 459 63.4
C07p35060 Brassica napus HOM05D007119 ORTHO05D009220 3.4e-171 605.5 460 63.7
BolC7t44037H Brassica oleracea HOM05D007119 ORTHO05D009220 7.5e-171 604.4 460 63.5
TAR371G0886 Trochodendron aralioides HOM05D007119 ORTHO05D009220 9.8e-171 604.0 445 67.4
Lsat_1_v5_gn_8_150440 Lactuca sativa HOM05D007119 ORTHO05D009220 1.7e-170 603.2 451 64.5
CARHR147090 Cardamine hirsuta HOM05D007119 ORTHO05D009220 1.9e-169 599.7 453 64.0
DCAR_007027 Daucus carota HOM05D007119 ORTHO05D009220 4.1e-169 598.6 446 65.5
Sc14g0008910 Simmondsia chinensis HOM05D007119 ORTHO05D009220 4.6e-168 595.1 461 63.1
Sp2g15290 Schrenkiella parvula HOM05D007119 ORTHO05D009220 6.0e-168 594.7 453 62.7
Hund25421 Selenicereus undatus HOM05D007119 ORTHO05D009220 6.6e-167 591.3 472 62.5
Solyc05g014160.4 Solanum lycopersicum HOM05D007119 ORTHO05D009220 8.6e-167 590.9 432 67.6
Aqoxy3G01324 Aquilegia oxysepala HOM05D007119 ORTHO05D009220 1.5e-166 590.1 451 62.1
BcaB07g30623 Brassica carinata HOM05D007119 ORTHO05D009220 1.9e-166 589.7 453 62.5
HanXRQChr12g0372081 Helianthus annuus HOM05D007119 ORTHO05D009220 2.5e-166 589.3 448 64.5
Migut.E00228 Erythranthe guttata HOM05D007119 ORTHO05D009220 7.6e-163 577.8 466 60.9
FAN22G2246 Fragaria x ananassa HOM05D007119 ORTHO05D009220 7.6e-163 577.8 434 67.7
MSTRG.13331 Avicennia marina HOM05D007119 ORTHO05D009220 2.2e-162 576.2 464 61.2
A09p25150 Brassica napus HOM05D007119 ORTHO05D009220 1.9e-161 573.2 453 60.3
C09p32210 Brassica napus HOM05D007119 ORTHO05D009220 3.2e-161 572.4 453 60.7
BraA09t38102Z Brassica rapa HOM05D007119 ORTHO05D009220 3.2e-161 572.4 453 59.8
PSO017G0770 Papaver somniferum HOM05D007119 ORTHO05D009220 4.1e-161 572.0 454 63.2
BcaC04g21404 Brassica carinata HOM05D007119 ORTHO05D009220 7.1e-161 571.2 453 60.0
BolC9t56067H Brassica oleracea HOM05D007119 ORTHO05D009220 7.1e-161 571.2 453 60.0
Ah.03g133650 Amaranthus hybridus HOM05D007119 ORTHO05D009220 6.6e-159 564.7 455 58.0
ECA233G0282 Erigeron canadensis HOM05D007119 ORTHO05D009220 1.9e-158 563.1 429 63.4
SalBow8G1200 Salvia bowleyana HOM05D007119 ORTHO05D009220 4.7e-157 558.5 438 62.6
Gohir.D02G154800 Gossypium hirsutum HOM05D007119 ORTHO05D009220 1.1e-156 557.4 396 70.2
AUR62024193 Chenopodium quinoa HOM05D007119 ORTHO05D009220 8.9e-156 554.3 472 57.2
ATR0824G105 Amborella trichopoda HOM05D007119 ORTHO05D009220 3.4e-155 552.4 461 58.8
ClCG05G026170 Citrullus lanatus HOM05D007119 ORTHO05D009220 7.3e-150 534.6 471 60.9
Lj6C818G13 Lonicera japonica HOM05D007119 ORTHO05D009220 9.6e-150 534.3 437 63.4
Thhalv10004169m.g Eutrema salsugineum HOM05D007119 ORTHO05D009220 2.1e-149 533.1 390 65.6
Ca_16499_v3 Cicer arietinum L. HOM05D007119 ORTHO05D009220 1.2e-147 527.3 308 85.1
Nn4g22487 Nelumbo nucifera HOM05D007119 ORTHO05D009220 5.8e-147 525.0 372 69.9
Peaxi162Scf00128g00648 Petunia axillaris HOM05D007119 ORTHO05D009220 4.9e-146 521.9 381 68.5
EL10As2g23223 Beta vulgaris HOM05D007119 ORTHO05D009220 5.4e-145 518.5 462 56.7
BcaC06g31096 Brassica carinata HOM05D007119 ORTHO05D009220 1.8e-140 503.4 451 57.6
SGA_v2.0_scaffold87G27113 Striga asiatica HOM05D007119 ORTHO05D009220 5.3e-132 475.3 395 60.3
MELO3C011902.2 Cucumis melo HOM05D007119 ORTHO05D009220 1.2e-128 464.2 467 56.3
Nitab4.5_0002688g0040 Nicotiana tabacum HOM05D007119 ORTHO05D009220 2.2e-122 443.4 333 66.4
Oeu012665.1 Olea europaea HOM05D007119 ORTHO05D009220 9.0e-116 421.4 309 66.3
Sopen05g009180 Solanum pennellii HOM05D007119 ORTHO05D009220 7.7e-115 418.3 310 66.1
SEGI_05094 Sequoiadendron giganteum HOM05D007119 ORTHO05D009220 5.5e-113 412.1 403 50.1
AUR62005541 Chenopodium quinoa HOM05D007119 ORTHO05D009220 1.5e-102 377.5 317 59.3
MBI08_g43995_MAGBIO Magnolia biondii HOM05D007119 ORTHO05D009220 4.5e-91 339.3 260 64.2
MBI08_g44099_MAGBIO Magnolia biondii HOM05D007119 ORTHO05D009220 4.5e-91 339.3 260 64.2
AagrBONN_evm.TU.Sc2ySwM_117.1226 Anthoceros agrestis HOM05D001585 ORTHO05D001677 9.8e-86 321.6 456 42.5
SMO165G0024 Selaginella moellendorffii HOM05D007119 ORTHO05D009220 7.5e-70 268.9 368 41.0
HanXRQChr08g0208021 Helianthus annuus HOM05D007119 ORTHO05D009220 9.2e-68 261.9 215 62.3
Nitab4.5_0000041g0220 Nicotiana tabacum HOM05D007119 ORTHO05D009220 1.3e-66 258.1 209 64.6
PGSC0003DMG401010743 Solanum tuberosum HOM05D007119 ORTHO05D009220 5.6e-65 252.7 183 70.5
CANSAT25G1465 Cannabis sativa HOM05D007119 ORTHO05D009220 1.7e-42 177.9 114 71.9
HanXRQChr08g0208031 Helianthus annuus HOM05D007119 ORTHO05D009220 1.6e-27 128.3 93 63.4
Nitab4.5_0002688g0050 Nicotiana tabacum HOM05D007119 ORTHO05D036862 5.6e-17 93.2 68 60.3
Nitab4.5_0000041g0230 Nicotiana tabacum HOM05D007119 ORTHO05D036862 1.6e-16 91.7 68 60.3
Peaxi162Scf00128g00647 Petunia axillaris HOM05D007119 ORTHO05D036862 5.8e-14 83.2 80 50.0
Glyma.16G096400 Glycine max HOM05D001723 ORTHO05D001706 2.3e-10 71.2 38 92.1


User provided reference genes

Program Settings