Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 0.0e+00 1280.8 640 100.0
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 8.2e-301 1036.6 627 82.9
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 3.2e-289 998.0 625 80.8
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 4.1e-276 954.5 627 77.0
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 7.7e-275 950.3 621 76.2
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 3.8e-274 948.0 622 76.2
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 4.2e-273 944.5 623 75.1
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 1.6e-272 942.6 621 75.5
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 9.1e-268 926.8 626 74.8
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 3.5e-267 924.9 628 74.7
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 8.0e-264 913.7 503 91.5
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.8e-260 902.5 624 73.4
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.4e-260 902.1 624 73.6
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 8.3e-229 797.3 625 64.5
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 1.1e-228 797.0 630 64.6
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.0e-226 790.4 626 64.5
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 3.0e-226 788.9 626 63.7
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 3.3e-225 785.4 626 63.6
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 4.7e-224 781.6 627 63.5
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 2.0e-222 776.2 626 62.8
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 1.3e-221 773.5 619 64.3
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 3.8e-221 771.9 626 62.3
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 2.7e-219 765.8 632 62.5
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 8.7e-218 760.8 630 62.5
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 1.1e-217 760.4 626 62.5
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 5.3e-215 751.5 627 62.4
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 1.3e-213 746.9 627 61.7
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 1.3e-213 746.9 633 62.1
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 2.2e-213 746.1 606 63.0
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 6.4e-213 744.6 627 61.6
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 8.4e-213 744.2 628 61.0
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 4.2e-212 741.9 626 61.2
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 5.4e-212 741.5 628 60.8
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 6.0e-211 738.0 625 60.6
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 1.8e-207 726.5 633 60.5
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 1.8e-207 726.5 629 60.4
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 1.5e-206 723.4 632 60.4
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 1.5e-206 723.4 629 59.3
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 5.8e-206 721.5 633 59.9
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 7.6e-206 721.1 627 60.3
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.9e-204 716.5 628 60.0
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.2e-204 715.3 626 59.9
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 4.2e-204 715.3 627 59.6
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 9.3e-204 714.1 627 60.1
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 2.1e-203 713.0 622 59.5
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 7.9e-203 711.1 659 57.1
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 1.3e-202 710.3 627 59.2
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 3.0e-202 709.1 624 59.9
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.5e-201 706.8 622 59.8
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 9.6e-201 704.1 626 58.9
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 2.1e-200 703.0 633 59.4
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 3.7e-200 702.2 623 58.3
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 3.7e-200 702.2 629 58.3
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 1.1e-199 700.7 627 58.5
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 1.8e-199 699.9 625 58.9
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 4.0e-199 698.7 624 59.1
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 1.2e-198 697.2 623 58.3
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 2.0e-198 696.4 630 58.7
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 1.3e-197 693.7 628 58.6
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 2.2e-197 693.0 699 54.1
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 2.5e-196 689.5 640 58.6
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 4.2e-196 688.7 625 57.6
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 5.5e-196 688.3 625 57.6
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 1.0e-194 684.1 624 58.5
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 1.0e-194 684.1 624 58.3
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 1.0e-194 684.1 624 58.3
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 1.8e-194 683.3 625 57.3
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 3.9e-194 682.2 624 58.5
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 1.9e-193 679.9 624 58.2
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 4.3e-193 678.7 639 57.9
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.8e-191 673.3 577 61.2
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 4.0e-191 672.2 643 56.3
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 4.0e-191 672.2 624 56.2
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 2.6e-190 669.5 687 53.4
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 1.9e-188 663.3 624 55.9
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 2.5e-188 662.9 626 57.0
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 4.2e-188 662.1 621 56.8
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 4.2e-188 662.1 626 55.9
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.2e-187 660.6 621 55.7
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 2.7e-187 659.4 626 55.8
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 7.9e-187 657.9 626 56.1
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 3.3e-185 652.5 533 62.1
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 1.3e-184 650.6 640 55.2
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 1.8e-183 646.7 623 53.6
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 4.1e-183 645.6 633 52.1
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 6.9e-183 644.8 627 53.7
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 2.2e-181 639.8 626 53.2
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 6.5e-181 638.3 669 51.4
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 4.2e-180 635.6 623 52.8
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 6.1e-179 631.7 625 53.9
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 2.0e-177 626.7 624 53.7
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 3.7e-176 622.5 629 52.8
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 1.4e-175 620.5 588 55.3
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 3.1e-175 619.4 627 52.5
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.6e-171 607.1 663 52.0
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 1.2e-163 580.9 532 57.9
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 3.0e-162 576.2 623 50.6
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 7.7e-158 561.6 622 48.1
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 1.9e-156 557.0 621 50.4
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 5.5e-156 555.4 639 46.3
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 5.5e-156 555.4 639 46.3
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.4e-154 550.8 636 46.2
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 4.2e-148 529.3 624 47.8
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 8.0e-147 525.0 628 47.1
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 1.0e-146 524.6 619 48.5
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 5.7e-145 518.8 606 48.0
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 1.7e-136 490.7 648 44.1
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 1.8e-135 487.3 513 51.3
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 1.0e-125 454.9 632 40.0
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 3.3e-124 449.9 403 56.6
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 8.1e-123 445.3 385 57.7
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.2e-110 404.8 589 40.6
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 6.8e-106 389.0 469 44.8
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 8.4e-104 382.1 404 53.7
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 6.9e-98 362.5 407 50.6
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 1.6e-78 298.1 752 30.2
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 2.4e-74 284.3 218 65.6
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 3.9e-69 266.9 615 31.5
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 8.2e-67 259.2 435 36.8
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 1.2e-54 218.8 144 75.0
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 6.1e-54 216.5 265 46.0
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 1.0e-53 215.7 391 35.0
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 5.7e-52 209.9 246 45.5
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.9e-47 194.9 164 62.8
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.5e-39 167.9 130 66.2
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 9.8e-36 156.0 640 24.8
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.2e-33 149.1 97 72.2
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 6.1e-30 136.7 103 67.0
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 2.3e-29 134.8 164 43.9
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 7.5e-28 129.8 158 48.7
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 7.0e-26 123.2 162 43.2
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 1.5e-20 105.5 80 68.8
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 6.4e-19 100.1 145 37.2
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 1.7e-16 92.0 74 58.1
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 5.0e-16 90.5 131 41.2
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.5e-15 89.0 117 48.7
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 5.6e-15 87.0 56 73.2
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 8.0e-14 83.2 65 66.2
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 5.8e-12 77.0 68 55.9
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 7.5e-12 76.6 163 29.4
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 6.4e-11 73.6 159 32.7
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 1.1e-10 72.8 75 58.7
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 1.4e-10 72.4 71 53.5
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 2.4e-10 71.6 84 48.8
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 3.2e-10 71.2 49 61.2
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 5.4e-10 70.5 116 42.2
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 5.4e-10 70.5 47 68.1
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 1.7e-08 65.5 82 42.7


User provided reference genes

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