Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G009100 Glycine max HOM05D006725 ORTHO05D008223 3.9e-87 324.7 158 100.0
Glyma.11G248100 Glycine max HOM05D006725 ORTHO05D008223 1.3e-77 293.1 178 84.3
Phvul.001G259500 Phaseolus vulgaris HOM05D006725 ORTHO05D008223 3.0e-71 271.9 181 77.3
Ca_16483_v3 Cicer arietinum L. HOM05D006725 ORTHO05D008223 6.5e-66 254.2 182 73.6
TPR.G22435 Trifolium pratense HOM05D006725 ORTHO05D008223 3.0e-63 245.4 184 71.7
arahy.Tifrunner.gnm1.ann1.245RAI Arachis hypogaea HOM05D006725 ORTHO05D008223 1.4e-60 236.5 139 86.3
Medtr3g085720 Medicago truncatula HOM05D006725 ORTHO05D008223 4.1e-60 235.0 177 70.6
Lj3g0011418 Lotus japonicus HOM05D006725 ORTHO05D008223 2.5e-57 225.7 179 67.0
CiPaw.05G115200 Carya illinoinensis HOM05D006725 ORTHO05D008223 4.7e-56 221.5 137 78.8
Lalb_Chr11g0075681 Lupinus albus HOM05D006725 ORTHO05D008223 1.1e-54 216.9 177 67.8
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 2.0e-54 216.1 135 78.5
Dinv14799 Davidia involucrata HOM05D006725 ORTHO05D008223 3.3e-54 215.3 137 75.9
MD16G1111700 Malus domestica HOM05D006725 ORTHO05D008223 3.3e-54 215.3 181 64.6
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 3.3e-54 215.3 137 75.9
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 9.7e-54 213.8 134 73.9
MD13G1112100 Malus domestica HOM05D006725 ORTHO05D008223 9.7e-54 213.8 181 64.1
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 6.3e-53 211.1 137 73.7
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 1.1e-52 210.3 137 73.7
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 1.4e-52 209.9 137 72.3
Duzib248G0208 Durio zibethinus HOM05D006725 ORTHO05D008223 2.4e-52 209.1 137 73.7
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 4.1e-52 208.4 135 71.9
TWI18G0344 Tripterygium wilfordii HOM05D006725 ORTHO05D008223 5.3e-52 208.0 137 73.0
arahy.Tifrunner.gnm1.ann1.ZVR9LL Arachis hypogaea HOM05D006725 ORTHO05D008223 9.1e-52 207.2 110 90.9
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 9.1e-52 207.2 137 73.7
PGR102G0799 Punica granatum HOM05D006725 ORTHO05D008223 1.2e-51 206.8 133 74.4
QL03p054759 Quercus lobata HOM05D006725 ORTHO05D008223 1.6e-51 206.5 137 74.5
CSS0023056 Camellia sinensis var. sinensis HOM05D006725 ORTHO05D008223 2.0e-51 206.1 132 71.2
Ciclev10032688m.g Citrus clementina HOM05D006725 ORTHO05D008223 3.5e-51 205.3 139 71.2
Gorai.005G171500 Gossypium raimondii HOM05D006725 ORTHO05D008223 3.5e-51 205.3 143 71.3
Gohir.D02G152500 Gossypium hirsutum HOM05D006725 ORTHO05D008223 1.3e-50 203.4 143 70.6
Sed0015494 Sechium edule HOM05D006725 ORTHO05D008223 1.7e-50 203.0 143 67.8
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 2.2e-50 202.6 140 72.1
Gohir.A03G128700 Gossypium hirsutum HOM05D006725 ORTHO05D008223 3.8e-50 201.8 133 73.7
FAN12G1259 Fragaria x ananassa HOM05D006725 ORTHO05D008223 5.0e-50 201.4 149 71.1
Cfa009314 Carpinus fangiana HOM05D006725 ORTHO05D008223 6.5e-50 201.1 142 72.5
Aqoxy5G03519 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 8.5e-50 200.7 139 71.2
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 4.2e-49 198.4 135 71.1
CANSAT56G1091 Cannabis sativa HOM05D006725 ORTHO05D008223 5.5e-49 198.0 175 59.4
FAN22G0294 Fragaria x ananassa HOM05D006725 ORTHO05D008223 7.2e-49 197.6 149 69.8
Sopen05g009780 Solanum pennellii HOM05D006725 ORTHO05D008223 1.2e-48 196.8 141 67.4
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 2.1e-48 196.1 132 72.7
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 2.1e-48 196.1 132 72.7
Peaxi162Scf00128g00835 Petunia axillaris HOM05D006725 ORTHO05D008223 2.1e-48 196.1 141 68.8
Solyc05g014650.2 Solanum lycopersicum HOM05D006725 ORTHO05D008223 4.7e-48 194.9 134 68.7
HPP92_021374 Vanilla planifolia HOM05D006725 ORTHO05D008223 6.1e-48 194.5 134 67.9
Psat5g094640 Pisum sativum HOM05D006725 ORTHO05D008223 1.8e-47 193.0 159 63.5
Haze_12368 Corylus avellana HOM05D006725 ORTHO05D008223 2.3e-47 192.6 175 60.6
PSO063G2169 Papaver somniferum HOM05D006725 ORTHO05D008223 2.3e-47 192.6 140 67.9
THA.LOC104825521 Tarenaya hassleriana HOM05D006725 ORTHO05D008223 2.3e-47 192.6 134 68.7
PSO782G3390 Papaver somniferum HOM05D006725 ORTHO05D008223 6.8e-47 191.0 139 67.6
Manes.13G015700 Manihot esculenta HOM05D006725 ORTHO05D008223 1.2e-46 190.3 102 85.3
HanXRQChr17g0569291 Helianthus annuus HOM05D006725 ORTHO05D008223 2.8e-45 185.7 135 67.4
Rhsim12G0035000 Rhododendron simsii HOM05D006725 ORTHO05D008223 2.8e-45 185.7 170 55.3
unitig_749.g13304 Utricularia gibba HOM05D006725 ORTHO05D008223 3.7e-45 185.3 136 63.2
vmacro01086 Vaccinium macrocarpon HOM05D006725 ORTHO05D008223 4.8e-45 184.9 121 68.6
Lsat_1_v5_gn_4_2821 Lactuca sativa HOM05D006725 ORTHO05D008223 8.3e-45 184.1 141 66.0
SGA_v2.0_scaffold46G17392 Striga asiatica HOM05D006725 ORTHO05D008223 1.4e-44 183.3 137 61.3
Migut.K00702 Erythranthe guttata HOM05D006725 ORTHO05D008223 2.4e-44 182.6 132 62.9
EL10Ac6g13437 Beta vulgaris HOM05D006725 ORTHO05D008223 5.4e-44 181.4 180 53.3
SalBow2G1482 Salvia bowleyana HOM05D006725 ORTHO05D008223 9.1e-44 180.6 154 60.4
Aqoxy5G03514 Aquilegia oxysepala HOM05D006725 ORTHO05D008223 3.5e-43 178.7 102 79.4
DCAR_007015 Daucus carota HOM05D006725 ORTHO05D008223 3.5e-43 178.7 141 63.8
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 3.5e-43 178.7 137 63.5
Eucgr.B03461 Eucalyptus grandis HOM05D006725 ORTHO05D008223 2.2e-42 176.0 149 60.4
Sabra08G0079700 Salix brachista HOM05D006725 ORTHO05D008223 1.1e-41 173.7 145 63.4
AL2G26280 Arabidopsis lyrata HOM05D006725 ORTHO05D008223 4.2e-41 171.8 138 62.3
CARHR060190 Cardamine hirsuta HOM05D006725 ORTHO05D008223 5.5e-41 171.4 139 63.3
Nitab4.5_0000581g0080 Nicotiana tabacum HOM05D006725 ORTHO05D008223 7.2e-41 171.0 141 61.0
VMungo1383G0611 Vigna mungo HOM05D006725 ORTHO05D008223 1.2e-40 170.2 182 57.1
AT1G67620 Arabidopsis thaliana HOM05D006725 ORTHO05D008223 1.6e-40 169.9 147 60.5
Carub.0002s1395 Capsella rubella HOM05D006725 ORTHO05D008223 2.7e-40 169.1 144 61.1
Lj3A1064T102 Lonicera japonica HOM05D006725 ORTHO05D008223 2.7e-40 169.1 110 72.7
Thhalv10019173m.g Eutrema salsugineum HOM05D006725 ORTHO05D008223 4.7e-40 168.3 134 63.4
ATR0609G130 Amborella trichopoda HOM05D006725 ORTHO05D008223 1.0e-39 167.2 119 61.3
AUR62005570 Chenopodium quinoa HOM05D006725 ORTHO05D008223 1.8e-39 166.4 216 45.4
BolC6t39176H Brassica oleracea HOM05D006725 ORTHO05D008223 2.0e-38 162.9 140 59.3
BcaB03g15182 Brassica carinata HOM05D006725 ORTHO05D008223 2.6e-38 162.5 140 60.7
A07p34140 Brassica napus HOM05D006725 ORTHO05D008223 4.4e-38 161.8 131 61.8
BraA07t31040Z Brassica rapa HOM05D006725 ORTHO05D008223 4.4e-38 161.8 131 61.8
BraA07t31044Z Brassica rapa HOM05D006725 ORTHO05D008223 4.4e-38 161.8 131 61.8
BcaC08g46171 Brassica carinata HOM05D006725 ORTHO05D008223 9.8e-38 160.6 131 61.1
C06p42630 Brassica napus HOM05D006725 ORTHO05D008223 9.8e-38 160.6 131 61.1
CDE09G0294 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 9.8e-38 160.6 106 74.5
GSVIVG01010346001 Vitis vinifera HOM05D006725 ORTHO05D008223 1.7e-37 159.8 109 71.6
Os12g0241100 Oryza sativa ssp. japonica HOM05D006725 ORTHO05D008223 8.3e-37 157.5 134 56.7
Zm00001eb133570 Zea mays HOM05D006725 ORTHO05D008223 1.4e-36 156.8 136 55.9
Aa31LG4G12010 Aethionema arabicum HOM05D006725 ORTHO05D008223 2.5e-33 146.0 118 57.6
Sc04g0004650 Simmondsia chinensis HOM05D006725 ORTHO05D008223 6.1e-32 141.4 103 64.1
MELO3C010728.2 Cucumis melo HOM05D006725 ORTHO05D008223 1.2e-30 137.1 81 77.8
arahy.Tifrunner.gnm1.ann1.GPZA99 Arachis hypogaea HOM05D006725 ORTHO05D008223 1.6e-27 126.7 88 72.7
Cc11_g16590 Coffea canephora HOM05D006725 ORTHO05D008223 1.7e-26 123.2 87 67.8
RcHm_v2.0_Chr7g0198741 Rosa chinensis HOM05D006725 ORTHO05D008223 2.5e-25 119.4 76 76.3
SalBow3G4645 Salvia bowleyana HOM05D006725 ORTHO05D008223 9.5e-25 117.5 85 69.4
ECA234G0356 Erigeron canadensis HOM05D006725 ORTHO05D008223 2.1e-24 116.3 89 67.4
Nitab4.5_0000240g0060 Nicotiana tabacum HOM05D006725 ORTHO05D008223 3.1e-23 112.5 89 62.9
RcHm_v2.0_Chr1g0343341 Rosa chinensis HOM05D006725 ORTHO05D008223 5.2e-23 111.7 72 77.8
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.9e-20 103.2 70 68.6
AUR62024160 Chenopodium quinoa HOM05D006725 ORTHO05D008223 7.0e-20 101.3 101 52.5
MBI08_g41741_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 1.3e-18 97.1 64 70.3
CAN.G1081.12 Capsicum annuum HOM05D006725 ORTHO05D008223 1.7e-18 96.7 73 58.9
CAN.G3094.1 Capsicum annuum HOM05D006725 ORTHO05D008223 1.7e-18 96.7 73 58.9
Atru.chr7.1050 Acer truncatum HOM05D006725 ORTHO05D008223 3.0e-18 95.9 68 70.6
SMO141G0262 Selaginella moellendorffii HOM05D006725 ORTHO05D008223 3.9e-18 95.5 102 37.3
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 5.0e-18 95.1 102 39.2
CAN.G1081.11 Capsicum annuum HOM05D006725 ORTHO05D008223 1.9e-17 93.2 51 80.4
CAN.G3094.2 Capsicum annuum HOM05D006725 ORTHO05D008223 1.9e-17 93.2 51 80.4
FvH4_4g24330 Fragaria vesca HOM05D006725 ORTHO05D008223 2.5e-17 92.8 51 84.3
Oeu041686.1 Olea europaea HOM05D006725 ORTHO05D008223 5.6e-17 91.7 51 78.4
CDE02G2623 Ceratophyllum demersum HOM05D006725 ORTHO05D008223 1.2e-16 90.5 50 80.0
CBR_g17596 Chara braunii HOM05D006725 ORTHO05D008223 3.6e-16 89.0 106 37.7
Hma1.2p1_0167F.1_g073800 Hydrangea macrophylla HOM05D006725 ORTHO05D008223 3.1e-15 85.9 51 72.5
Actinidia30676 Actinidia chinensis HOM05D006725 ORTHO05D008223 1.2e-14 84.0 60 61.7
MCO03G004 Micromonas commoda HOM05D006725 ORTHO05D008223 2.6e-14 82.8 114 34.2
RcHm_v2.0_Chr1g0366581 Rosa chinensis HOM05D006725 ORTHO05D008223 4.9e-13 78.6 52 76.9
RcHm_v2.0_Chr3g0456071 Rosa chinensis HOM05D006725 ORTHO05D008223 8.3e-13 77.8 51 76.5
RcHm_v2.0_Chr7g0183971 Rosa chinensis HOM05D006725 ORTHO05D008223 1.1e-12 77.4 52 75.0
MBI08_g41742_MAGBIO Magnolia biondii HOM05D006725 ORTHO05D008223 6.0e-11 71.6 40 75.0
Cpa.g.sc351.2 Carica papaya HOM05D006725 ORTHO05D008223 1.0e-10 70.9 128 34.4
SpUn0282_0010 Schrenkiella parvula HOM05D006725 ORTHO05D008223 2.1e-08 63.2 50 64.0
arahy.Tifrunner.gnm1.ann1.02S1KF Arachis hypogaea HOM05D003716 ORTHO05D010944 4.0e-07 58.9 32 84.4
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 2.6e-06 56.2 97 36.1
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 9.9e-06 54.3 98 32.7


User provided reference genes

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