Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 0.0e+00 1668.7 860 100.0
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 9.8e-217 757.7 867 57.7
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 1.5e-124 451.4 1065 37.1
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 3.6e-118 430.3 1127 35.8
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 5.2e-109 399.8 1124 33.3
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 4.7e-102 376.7 1119 33.6
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 3.5e-97 360.5 1123 33.4
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.2e-92 345.5 995 33.8
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 5.4e-90 336.7 995 33.2
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 1.5e-79 302.0 746 35.8
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 2.0e-76 291.6 1139 30.0
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.6e-73 282.0 1150 29.2
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 3.2e-66 257.7 877 32.2
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 5.8e-60 236.9 927 29.8
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 2.2e-59 235.0 1037 28.2
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 8.4e-59 233.0 1053 29.3
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 3.9e-48 197.6 1043 27.8
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 1.9e-26 125.6 776 28.0
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 1.9e-26 125.6 992 22.5
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.0e-24 119.8 490 29.2
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 2.3e-24 118.6 1009 23.7
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 5.2e-24 117.5 1035 24.0
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 7.0e-21 107.1 413 30.5
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 3.5e-20 104.8 584 25.5
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 3.5e-20 104.8 417 30.2
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 5.0e-19 100.9 483 26.1
arahy.Tifrunner.gnm1.ann1.JXU29S Arachis hypogaea HOM05D005839 ORTHO05D005686 3.2e-18 98.2 169 41.4
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 3.2e-18 98.2 1026 23.1
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 3.6e-17 94.7 1054 24.1
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 4.7e-17 94.4 180 40.0
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 1.8e-16 92.4 973 22.2
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 3.0e-16 91.7 1034 22.9
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 5.2e-16 90.9 503 25.6
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.4e-15 88.2 1028 22.8
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.7e-14 85.9 703 24.6
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.7e-14 85.9 505 26.1
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.2e-14 85.5 903 24.0
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 1.8e-13 82.4 423 27.0
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 1.2e-12 79.7 557 25.5
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 2.0e-12 79.0 164 39.0
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 2.7e-12 78.6 166 36.1
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 3.5e-12 78.2 931 23.3
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 4.5e-12 77.8 532 24.8
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 4.5e-12 77.8 523 23.9
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 1.7e-11 75.9 705 23.8
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 2.3e-11 75.5 142 35.2
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 3.8e-11 74.7 132 37.9
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 3.8e-11 74.7 1036 21.8
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.5e-10 72.8 903 23.1
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.9e-10 72.4 142 38.7
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 4.2e-10 71.2 117 41.0
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 4.2e-10 71.2 150 40.7
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 5.5e-10 70.9 117 37.6
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 9.5e-10 70.1 150 38.0
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 9.5e-10 70.1 663 23.7
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 1.2e-09 69.7 150 40.0
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.6e-09 69.3 117 37.6
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.0e-08 66.6 245 30.2
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.0e-08 66.6 259 26.6
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.0e-08 66.6 1029 22.6
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 1.4e-08 66.2 119 36.1
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 1.4e-08 66.2 133 35.3
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 2.3e-08 65.5 225 29.3
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 2.3e-08 65.5 250 29.2
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 2.3e-08 65.5 152 32.9
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 2.3e-08 65.5 150 39.3
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 3.0e-08 65.1 134 35.1
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 4.0e-08 64.7 1062 21.5
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 5.2e-08 64.3 150 34.0
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 6.8e-08 63.9 147 34.7
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 8.9e-08 63.5 164 36.0
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 8.9e-08 63.5 146 38.4
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 8.9e-08 63.5 436 25.7
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 1.2e-07 63.2 244 32.4
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 1.5e-07 62.8 344 26.2
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 3.4e-07 61.6 440 25.5
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 4.4e-07 61.2 150 34.0
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 5.7e-07 60.8 197 31.5
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 7.5e-07 60.5 156 32.7
arahy.Tifrunner.gnm1.ann1.TC2NGU Arachis hypogaea HOM05D010837 ORTHO05D007788 9.8e-07 60.1 111 36.9
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 9.8e-07 60.1 90 42.2
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 9.8e-07 60.1 90 42.2
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 1.3e-06 59.7 143 36.4
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 1.3e-06 59.7 112 34.8
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.3e-06 59.7 88 44.3
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.7e-06 59.3 1015 22.5
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 2.8e-06 58.5 100 37.0
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 3.7e-06 58.2 128 35.2
VMungo1383G2511 Vigna mungo HOM05D005839 ORTHO05D433385 3.7e-06 58.2 380 26.1
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 4.9e-06 57.8 523 23.5
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 6.3e-06 57.4 416 25.7
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.3e-06 57.4 149 33.6
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 6.3e-06 57.4 149 33.6
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 6.3e-06 57.4 154 34.4
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.3e-06 57.0 131 35.1


User provided reference genes

Program Settings