Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 7.5e-248 860.1 458 100.0
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 5.6e-211 737.6 457 88.8
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 1.8e-209 732.6 457 88.4
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 2.9e-199 698.7 456 79.4
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 2.3e-196 689.1 455 79.3
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 5.1e-196 688.0 461 78.1
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 8.7e-196 687.2 472 77.8
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 5.3e-193 677.9 454 82.6
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 3.8e-191 671.8 463 75.6
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 8.4e-191 670.6 457 76.6
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.4e-190 669.8 463 75.6
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 1.3e-186 656.8 387 93.3
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 3.1e-177 625.5 431 80.7
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 2.3e-172 609.4 460 68.5
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 6.3e-170 601.3 456 69.7
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 1.8e-169 599.7 452 69.0
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 3.1e-169 599.0 468 68.2
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 5.0e-167 591.7 460 67.6
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 6.5e-167 591.3 458 68.6
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 1.4e-166 590.1 472 67.4
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 7.2e-166 587.8 467 66.8
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 1.6e-165 586.6 450 69.1
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 2.7e-165 585.9 481 67.2
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 4.7e-165 585.1 459 67.8
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 6.1e-165 584.7 458 67.0
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.4e-164 583.6 457 67.0
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 1.8e-164 583.2 459 67.3
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 3.0e-164 582.4 462 65.8
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 5.2e-164 581.6 456 66.4
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 8.8e-164 580.9 458 67.5
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.5e-163 580.1 460 66.1
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 3.3e-163 578.9 463 66.5
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 3.3e-163 578.9 456 66.2
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 8.2e-162 574.3 456 66.0
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 2.4e-161 572.8 496 63.3
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 2.4e-161 572.8 496 63.3
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 3.5e-160 568.9 459 65.6
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 3.8e-159 565.5 460 65.0
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 8.5e-159 564.3 463 64.6
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 3.2e-158 562.4 462 65.8
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.6e-157 560.1 474 63.9
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 2.7e-157 559.3 461 64.6
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 1.2e-155 553.9 459 63.2
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 7.5e-155 551.2 450 64.9
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 3.7e-154 548.9 453 63.6
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 1.1e-153 547.4 465 64.3
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 1.8e-153 546.6 458 63.8
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 3.1e-153 545.8 456 65.4
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 9.1e-153 544.3 460 62.4
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 5.9e-152 541.6 438 66.0
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 1.7e-151 540.0 454 62.6
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 2.2e-151 539.7 472 62.7
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 2.9e-151 539.3 459 63.0
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 3.2e-150 535.8 468 61.3
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 1.2e-149 533.9 462 60.8
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 1.6e-149 533.5 467 61.5
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 2.7e-149 532.7 469 61.2
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 4.7e-149 531.9 470 61.5
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 5.2e-148 528.5 466 61.4
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 8.8e-148 527.7 463 61.1
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 1.2e-147 527.3 500 57.0
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 7.5e-147 524.6 522 56.7
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 4.8e-146 521.9 462 61.0
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 6.3e-146 521.5 462 61.5
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 2.4e-145 519.6 466 59.2
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 9.1e-145 517.7 457 62.4
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.2e-144 517.3 459 59.9
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 3.5e-144 515.8 464 61.0
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 1.3e-143 513.8 462 60.2
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 2.3e-143 513.1 462 60.0
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 1.1e-142 510.8 445 61.6
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 5.5e-142 508.4 458 58.7
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 5.5e-142 508.4 477 58.1
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 5.5e-142 508.4 459 57.5
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 2.8e-141 506.1 466 59.9
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 2.8e-141 506.1 472 57.4
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 1.8e-140 503.4 461 59.7
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 8.8e-140 501.1 459 59.7
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 1.2e-139 500.7 459 59.7
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 1.5e-139 500.4 457 59.5
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 2.0e-139 500.0 459 60.1
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 7.5e-139 498.0 462 59.1
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 8.3e-138 494.6 457 59.3
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 8.3e-138 494.6 433 60.7
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 1.1e-137 494.2 462 58.9
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 2.4e-137 493.0 462 58.7
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 7.0e-137 491.5 533 52.3
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 9.2e-137 491.1 489 55.4
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 9.2e-137 491.1 454 58.8
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 9.2e-137 491.1 454 58.8
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 1.6e-136 490.3 462 57.6
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 5.9e-136 488.4 448 60.7
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 8.6e-135 484.6 464 58.2
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 1.5e-134 483.8 456 59.9
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 5.6e-134 481.9 461 56.8
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 2.1e-133 479.9 467 58.0
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 2.2e-130 469.9 482 53.5
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 3.7e-130 469.2 469 56.5
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 2.4e-129 466.5 482 52.5
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 2.7e-128 463.0 401 62.1
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 2.1e-125 453.4 461 55.3
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 2.1e-125 453.4 462 55.8
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 4.7e-125 452.2 499 51.5
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 1.8e-124 450.3 449 56.8
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 8.9e-124 448.0 312 78.2
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.7e-122 443.7 495 50.7
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 1.8e-116 423.7 345 63.8
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 7.6e-107 391.7 455 48.4
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.7e-104 383.3 460 48.9
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 3.9e-103 379.4 297 67.7
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 6.9e-100 368.6 503 44.3
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 4.9e-98 362.5 349 59.0
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 2.1e-96 357.1 531 41.1
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 5.6e-94 349.0 487 43.1
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 1.3e-90 337.8 366 53.8
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.3e-82 311.2 317 55.2
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 5.6e-78 295.8 610 34.1
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 3.8e-66 256.5 538 35.5
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 2.0e-59 234.2 466 33.9
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 1.6e-56 224.6 462 33.1
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 3.1e-52 210.3 513 31.2
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 4.5e-51 206.5 225 56.4
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 9.7e-46 188.7 156 63.5
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 1.4e-44 184.9 247 48.6
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.2e-43 181.8 246 44.7
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 3.7e-21 107.1 212 40.1
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 1.1e-20 105.5 212 39.6
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 9.2e-20 102.4 73 68.5
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 5.9e-19 99.8 157 43.9
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 6.6e-18 96.3 131 48.1
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 2.1e-16 91.3 84 52.4
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 4.7e-16 90.1 127 42.5
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 4.0e-15 87.0 109 47.7
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 4.0e-15 87.0 233 33.0
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 5.8e-14 83.2 111 46.8
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 9.8e-14 82.4 63 61.9
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 3.0e-10 70.9 94 41.5
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 1.5e-09 68.6 93 47.3
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 1.9e-09 68.2 144 32.6
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 4.3e-09 67.0 138 36.2
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 5.6e-09 66.6 93 46.2
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 1.6e-08 65.1 113 40.7
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 3.6e-08 63.9 39 71.8
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 4.0e-07 60.5 34 79.4


User provided reference genes

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