Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 1.1e-133 479.9 243 100.0
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 4.4e-122 441.4 234 94.9
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 2.8e-108 395.6 242 80.6
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 6.8e-107 391.0 219 87.7
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 1.3e-105 386.7 220 88.2
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 1.9e-101 372.9 237 78.1
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 2.0e-98 362.8 240 74.6
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 5.4e-96 354.8 225 75.6
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 7.1e-96 354.4 224 74.6
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 1.2e-95 353.6 241 72.2
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.6e-95 353.2 224 75.0
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 3.9e-94 348.6 224 75.0
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 6.6e-94 347.8 232 75.0
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 8.7e-94 347.4 224 75.4
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 2.5e-93 345.9 237 74.7
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 4.8e-92 341.7 223 74.4
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 3.1e-91 339.0 224 72.8
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 5.3e-91 338.2 224 70.5
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 6.9e-91 337.8 223 72.2
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 6.9e-91 337.8 224 72.3
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 1.2e-90 337.0 224 72.3
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 2.0e-90 336.3 224 72.3
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 3.4e-90 335.5 224 72.8
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 7.6e-90 334.3 225 71.1
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 2.9e-89 332.4 225 70.2
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 2.9e-89 332.4 223 71.7
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 2.9e-89 332.4 225 70.7
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 1.4e-88 330.1 224 71.9
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 2.4e-88 329.3 224 70.1
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.4e-88 329.3 239 68.2
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 2.4e-88 329.3 239 68.2
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 4.2e-88 328.6 239 68.2
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 7.1e-88 327.8 224 71.9
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 1.2e-87 327.0 239 67.8
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 1.6e-87 326.6 223 69.1
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 2.7e-87 325.9 223 69.5
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 7.9e-87 324.3 220 70.9
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 1.3e-86 323.6 225 68.4
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 5.1e-86 321.6 221 70.1
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 6.7e-86 321.2 225 68.9
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 8.7e-86 320.9 220 72.7
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 1.9e-85 319.7 222 68.5
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 1.9e-85 319.7 229 67.2
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 1.9e-85 319.7 230 67.0
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 1.9e-85 319.7 219 71.7
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 2.5e-85 319.3 220 69.5
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 2.5e-85 319.3 225 68.4
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 2.5e-85 319.3 222 67.6
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 4.3e-85 318.5 221 70.1
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 4.3e-85 318.5 223 67.3
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 4.3e-85 318.5 223 69.1
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 9.6e-85 317.4 224 69.2
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 9.6e-85 317.4 225 71.1
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 1.3e-84 317.0 224 67.9
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 1.6e-84 316.6 226 66.4
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 2.1e-84 316.2 223 66.8
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 2.8e-84 315.8 226 68.6
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 2.8e-84 315.8 223 68.6
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 1.4e-83 313.5 224 63.8
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.1e-83 312.4 221 68.8
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 3.1e-83 312.4 220 69.1
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 3.1e-83 312.4 220 69.1
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 4.0e-83 312.0 228 65.4
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 9.0e-83 310.8 220 69.1
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 1.2e-82 310.5 222 67.1
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 2.0e-82 309.7 224 64.3
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 4.5e-82 308.5 192 74.5
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 5.8e-82 308.1 220 68.6
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 7.6e-82 307.8 220 66.8
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 7.6e-82 307.8 231 61.9
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 3.8e-81 305.4 221 65.6
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 3.8e-81 305.4 223 65.5
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.9e-80 303.1 223 65.0
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.5e-80 302.8 224 66.5
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 1.6e-79 300.1 203 70.9
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 2.7e-79 299.3 255 60.0
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 2.7e-79 299.3 223 63.7
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 3.5e-79 298.9 226 64.6
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 7.9e-79 297.7 226 64.2
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 1.3e-78 297.0 228 63.2
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 1.8e-78 296.6 224 64.7
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 5.1e-78 295.0 224 64.3
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 3.3e-77 292.4 202 72.3
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 5.6e-77 291.6 216 63.4
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 7.4e-77 291.2 220 62.7
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.3e-76 290.4 219 62.1
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.6e-76 290.0 217 71.4
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 4.8e-76 288.5 224 62.5
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 6.2e-76 288.1 223 64.6
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 8.2e-76 287.7 218 64.2
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 1.1e-75 287.3 224 60.7
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.4e-75 287.0 222 62.6
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 1.8e-75 286.6 224 62.5
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 1.8e-75 286.6 224 62.5
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.8e-75 286.6 230 61.7
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.8e-75 286.6 230 61.7
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 2.4e-75 286.2 220 62.3
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 2.4e-75 286.2 220 62.3
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 2.4e-75 286.2 282 55.7
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 3.1e-75 285.8 254 57.9
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 5.3e-75 285.0 224 61.6
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 6.9e-75 284.6 218 63.8
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 6.9e-75 284.6 220 61.8
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 6.9e-75 284.6 220 61.8
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 6.9e-75 284.6 220 61.8
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 1.5e-74 283.5 224 61.6
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 1.5e-74 283.5 224 61.6
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 4.5e-74 282.0 224 62.1
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.7e-73 280.0 223 60.5
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 1.7e-73 280.0 219 63.9
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 2.2e-73 279.6 226 62.4
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 2.2e-73 279.6 220 62.7
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 3.8e-73 278.9 194 69.6
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 3.8e-73 278.9 224 64.7
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 3.2e-72 275.8 212 62.7
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 5.5e-72 275.0 186 70.4
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 2.1e-71 273.1 193 67.4
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 1.3e-70 270.4 222 59.0
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.8e-70 270.0 250 56.0
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-69 267.3 222 58.1
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 3.3e-69 265.8 160 76.9
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 5.7e-69 265.0 224 58.9
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 2.6e-66 256.1 195 62.1
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 1.3e-65 253.8 188 63.8
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 8.5e-65 251.1 199 57.3
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 1.4e-64 250.4 227 55.1
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 1.4e-64 250.4 227 55.1
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 1.6e-63 246.9 207 58.5
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 8.8e-62 241.1 205 54.1
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 9.7e-61 237.7 157 70.1
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 2.8e-60 236.1 223 52.0
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 2.6e-58 229.6 236 52.5
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 1.9e-56 223.4 151 70.9
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 3.2e-56 222.6 218 48.6
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 1.6e-55 220.3 174 63.2
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-53 214.2 215 51.2
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 7.4e-53 211.5 151 66.2
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 3.7e-52 209.1 180 58.3
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 3.5e-50 202.6 224 47.3
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 1.0e-49 201.1 120 78.3
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.7e-49 200.3 232 48.7
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 6.5e-49 198.4 213 44.6
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 3.6e-47 192.6 216 45.4
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 4.7e-47 192.2 120 74.2
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.0e-45 186.8 151 55.6
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 2.0e-42 176.8 189 45.0
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 7.7e-42 174.9 121 69.4
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 2.7e-31 139.8 154 43.5
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 3.0e-30 136.3 104 72.1
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 9.8e-29 131.3 90 74.4
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.4e-27 127.5 124 52.4
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 4.1e-27 125.9 209 34.4
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 8.0e-23 111.7 73 67.1
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 5.4e-19 99.0 80 57.5
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 9.2e-19 98.2 170 37.6
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 9.2e-19 98.2 170 37.6
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 3.9e-17 92.8 66 74.2
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 5.0e-17 92.4 74 58.1
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 8.9e-14 81.6 71 53.5
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 1.2e-10 71.2 47 61.7
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 1.9e-08 63.9 35 77.1
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 3.3e-08 63.2 59 52.5


User provided reference genes

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