Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G252600 Glycine max HOM05D006275 ORTHO05D007839 4.0e-90 334.7 166 100.0
Glyma.14G072400 Glycine max HOM05D006275 ORTHO05D007839 1.7e-64 249.6 166 77.7
Phvul.001G012400 Phaseolus vulgaris HOM05D006275 ORTHO05D007839 6.4e-56 221.1 166 70.5
VMungo0647G0412 Vigna mungo HOM05D006275 ORTHO05D007839 1.6e-54 216.5 166 69.9
Medtr1g022450 Medicago truncatula HOM05D006275 ORTHO05D007839 7.3e-52 207.6 165 65.5
Psat6g009240 Pisum sativum HOM05D006275 ORTHO05D007839 1.5e-49 199.9 166 62.7
arahy.Tifrunner.gnm1.ann1.RSD13X Arachis hypogaea HOM05D006275 ORTHO05D007839 2.6e-49 199.1 166 62.7
arahy.Tifrunner.gnm1.ann1.T5GRUU Arachis hypogaea HOM05D006275 ORTHO05D007839 2.6e-49 199.1 166 62.7
Ca_18049_v3 Cicer arietinum L. HOM05D006275 ORTHO05D007839 2.6e-49 199.1 166 62.7
Lj5g0023115 Lotus japonicus HOM05D006275 ORTHO05D007839 9.9e-49 197.2 169 62.1
arahy.Tifrunner.gnm1.ann1.W9L06J Arachis hypogaea HOM05D006275 ORTHO05D007839 8.4e-48 194.1 164 62.2
arahy.Tifrunner.gnm1.ann1.WR55YC Arachis hypogaea HOM05D006275 ORTHO05D007839 8.4e-48 194.1 164 62.2
Lalb_Chr22g0354641 Lupinus albus HOM05D006275 ORTHO05D007839 1.7e-45 186.4 166 60.2
TPR.G20152 Trifolium pratense HOM05D006275 ORTHO05D007839 1.1e-44 183.7 158 62.0
MD08G1027600 Malus domestica HOM05D006275 ORTHO05D007839 2.8e-43 179.1 102 83.3
Thecc.08G031000 Theobroma cacao HOM05D006275 ORTHO05D007839 4.8e-43 178.3 159 59.7
Prupe.1G376100 Prunus persica HOM05D006275 ORTHO05D007839 8.1e-43 177.6 102 81.4
RcHm_v2.0_Chr6g0301461 Rosa chinensis HOM05D006275 ORTHO05D007839 8.1e-43 177.6 101 80.2
FvH4_2g39490 Fragaria vesca HOM05D006275 ORTHO05D007839 3.1e-42 175.6 99 81.8
Gohir.D05G195400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 3.1e-42 175.6 101 81.2
Gorai.009G200300 Gossypium raimondii HOM05D006275 ORTHO05D007839 3.1e-42 175.6 101 81.2
MD15G1023800 Malus domestica HOM05D006275 ORTHO05D007839 4.0e-42 175.3 102 79.4
Manes.05G156800 Manihot esculenta HOM05D006275 ORTHO05D007839 5.3e-42 174.9 99 81.8
Cpa.g.c33902 Carica papaya HOM05D006275 ORTHO05D007839 6.9e-42 174.5 99 79.8
FAN15G2697 Fragaria x ananassa HOM05D006275 ORTHO05D007839 6.9e-42 174.5 99 80.8
FAN27G1059 Fragaria x ananassa HOM05D006275 ORTHO05D007839 6.9e-42 174.5 99 80.8
CANSAT56G0974 Cannabis sativa HOM05D006275 ORTHO05D007839 1.2e-41 173.7 101 82.2
Cc09_g08950 Coffea canephora HOM05D006275 ORTHO05D007839 2.6e-41 172.6 99 81.8
Gohir.A05G192200 Gossypium hirsutum HOM05D006275 ORTHO05D007839 2.6e-41 172.6 101 79.2
Duzib093G0437 Durio zibethinus HOM05D006275 ORTHO05D007839 4.5e-41 171.8 101 78.2
Eucgr.F01878 Eucalyptus grandis HOM05D006275 ORTHO05D007839 4.5e-41 171.8 101 82.2
Haze_22533 Corylus avellana HOM05D006275 ORTHO05D007839 5.8e-41 171.4 102 76.5
Cfa013858 Carpinus fangiana HOM05D006275 ORTHO05D007839 1.7e-40 169.9 102 75.5
COL.COLO4_26271 Corchorus olitorius HOM05D006275 ORTHO05D007839 2.2e-40 169.5 101 81.2
PGR031G1371 Punica granatum HOM05D006275 ORTHO05D007839 2.2e-40 169.5 99 78.8
MELO3C003811.2 Cucumis melo HOM05D006275 ORTHO05D007839 3.8e-40 168.7 101 79.2
CsaV3_3G045380 Cucumis sativus L. HOM05D006275 ORTHO05D007839 3.8e-40 168.7 101 79.2
GSVIVG01009748001 Vitis vinifera HOM05D006275 ORTHO05D007839 4.9e-40 168.3 101 80.2
Atru.chr13.432 Acer truncatum HOM05D006275 ORTHO05D007839 8.4e-40 167.5 102 76.5
Ciclev10002669m.g Citrus clementina HOM05D006275 ORTHO05D007839 8.4e-40 167.5 102 79.4
TWI36G0893 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 8.4e-40 167.5 122 69.7
CSS0002686 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.4e-39 166.8 100 77.0
CSS0030866 Camellia sinensis var. sinensis HOM05D000817 ORTHO05D000702 1.4e-39 166.8 100 77.0
ClCG05G018790 Citrullus lanatus HOM05D006275 ORTHO05D007839 1.4e-39 166.8 99 77.8
Dinv39443 Davidia involucrata HOM05D006275 ORTHO05D007839 1.4e-39 166.8 100 78.0
TAR628G1199 Trochodendron aralioides HOM05D006275 ORTHO05D007839 1.4e-39 166.8 100 79.0
Sed0006872 Sechium edule HOM05D006275 ORTHO05D007839 1.9e-39 166.4 101 78.2
BcaC02g12477 Brassica carinata HOM05D006275 ORTHO05D007839 3.2e-39 165.6 100 77.0
BcaC08g47361 Brassica carinata HOM05D006275 ORTHO05D007839 3.2e-39 165.6 100 76.0
A05p02860 Brassica napus HOM05D006275 ORTHO05D007839 3.2e-39 165.6 100 77.0
A07p40910 Brassica napus HOM05D006275 ORTHO05D007839 3.2e-39 165.6 100 76.0
C04p03490 Brassica napus HOM05D006275 ORTHO05D007839 3.2e-39 165.6 100 77.0
C06p49340 Brassica napus HOM05D006275 ORTHO05D007839 3.2e-39 165.6 100 76.0
BolC4t21983H Brassica oleracea HOM05D006275 ORTHO05D007839 3.2e-39 165.6 100 77.0
BolC6t39969H Brassica oleracea HOM05D006275 ORTHO05D007839 3.2e-39 165.6 100 76.0
BraA05t19277Z Brassica rapa HOM05D006275 ORTHO05D007839 3.2e-39 165.6 100 77.0
BraA07t31631Z Brassica rapa HOM05D006275 ORTHO05D007839 3.2e-39 165.6 100 76.0
Thhalv10019294m.g Eutrema salsugineum HOM05D006275 ORTHO05D007839 4.2e-39 165.2 101 75.2
Nn1g04018 Nelumbo nucifera HOM05D006275 ORTHO05D007839 4.2e-39 165.2 98 78.6
BcaC08g47007 Brassica carinata HOM05D006275 ORTHO05D007839 5.4e-39 164.9 100 75.0
Carub.0002s2219 Capsella rubella HOM05D006275 ORTHO05D007839 5.4e-39 164.9 111 72.1
CARHR068700 Cardamine hirsuta HOM05D006275 ORTHO05D007839 5.4e-39 164.9 107 72.9
AL2G35280 Arabidopsis lyrata HOM05D006275 ORTHO05D007839 7.1e-39 164.5 100 76.0
AT1G75350 Arabidopsis thaliana HOM05D006275 ORTHO05D007839 9.3e-39 164.1 99 74.7
Sabra02G0026900 Salix brachista HOM05D006275 ORTHO05D007839 9.3e-39 164.1 115 69.6
Sp5g30490 Schrenkiella parvula HOM05D006275 ORTHO05D007839 9.3e-39 164.1 100 76.0
Aa31LG4G5560 Aethionema arabicum HOM05D006275 ORTHO05D007839 1.2e-38 163.7 107 72.0
Potri.002G033300 Populus trichocarpa HOM05D006275 ORTHO05D007839 1.6e-38 163.3 102 74.5
Sc02g0005820 Simmondsia chinensis HOM05D006275 ORTHO05D007839 1.6e-38 163.3 100 77.0
THA.LOC104811376 Tarenaya hassleriana HOM05D006275 ORTHO05D007839 2.1e-38 162.9 99 72.7
EL10Ac1g00643 Beta vulgaris HOM05D006275 ORTHO05D007839 4.6e-38 161.8 93 75.3
CiPaw.07G158800 Carya illinoinensis HOM05D006275 ORTHO05D007839 7.9e-38 161.0 103 76.7
Actinidia37997 Actinidia chinensis HOM05D006275 ORTHO05D007839 2.3e-37 159.5 90 77.8
Oeu047769.1 Olea europaea HOM05D006275 ORTHO05D007839 2.3e-37 159.5 99 77.8
Ah.05g177020 Amaranthus hybridus HOM05D006275 ORTHO05D007839 3.0e-37 159.1 97 75.3
Oeu002824.1 Olea europaea HOM05D006275 ORTHO05D007839 3.0e-37 159.1 99 77.8
MSTRG.1264 Avicennia marina HOM05D006275 ORTHO05D007839 5.1e-37 158.3 99 76.8
Migut.N00484 Erythranthe guttata HOM05D006275 ORTHO05D007839 8.7e-37 157.5 99 73.7
AUR62014497 Chenopodium quinoa HOM05D006275 ORTHO05D007839 1.5e-36 156.8 93 72.0
vmacro04538 Vaccinium macrocarpon HOM05D006275 ORTHO05D007839 1.5e-36 156.8 96 77.1
SalBow7G2217 Salvia bowleyana HOM05D006275 ORTHO05D007839 1.9e-36 156.4 93 75.3
unitig_46.g17937 Utricularia gibba HOM05D006275 ORTHO05D007839 2.5e-36 156.0 99 72.7
CSS0039262 Camellia sinensis var. sinensis HOM05D006275 ORTHO05D007839 3.3e-36 155.6 97 74.2
Migut.J00614 Erythranthe guttata HOM05D006275 ORTHO05D007839 3.3e-36 155.6 116 69.0
HanXRQChr16g0501501 Helianthus annuus HOM05D006275 ORTHO05D007839 4.3e-36 155.2 102 72.5
AUR62038041 Chenopodium quinoa HOM05D006275 ORTHO05D007839 5.6e-36 154.8 93 72.0
HanXRQChr09g0268981 Helianthus annuus HOM05D006275 ORTHO05D007839 5.6e-36 154.8 100 71.0
ECA232G2653 Erigeron canadensis HOM05D006275 ORTHO05D007839 7.4e-36 154.5 100 70.0
PSO731G0021 Papaver somniferum HOM05D006275 ORTHO05D007839 7.4e-36 154.5 101 71.3
HPP92_009679 Vanilla planifolia HOM05D006275 ORTHO05D007839 7.4e-36 154.5 99 68.7
PSO764G0160 Papaver somniferum HOM05D006275 ORTHO05D007839 9.6e-36 154.1 101 70.3
ATR0568G031 Amborella trichopoda HOM05D006275 ORTHO05D007839 1.3e-35 153.7 102 69.6
Lsat_1_v5_gn_4_117720 Lactuca sativa HOM05D006275 ORTHO05D007839 2.1e-35 152.9 102 69.6
Peaxi162Scf00140g10025 Petunia axillaris HOM05D006275 ORTHO05D007839 2.8e-35 152.5 93 72.0
CDE02G2235 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 8.1e-35 151.0 102 71.6
CDE06G0798 Ceratophyllum demersum HOM05D006275 ORTHO05D007839 1.1e-34 150.6 102 71.6
Nitab4.5_0003265g0060 Nicotiana tabacum HOM05D006275 ORTHO05D007839 1.4e-34 150.2 99 71.7
Nitab4.5_0009228g0020 Nicotiana tabacum HOM05D006275 ORTHO05D007839 1.4e-34 150.2 99 71.7
SGA_v2.0_scaffold201G41391 Striga asiatica HOM05D006275 ORTHO05D007839 4.0e-34 148.7 101 69.3
Aqoxy5G01584 Aquilegia oxysepala HOM05D006275 ORTHO05D007839 6.9e-34 147.9 100 69.0
DCAR_022467 Daucus carota HOM05D006275 ORTHO05D007839 9.0e-34 147.5 93 69.9
Rhsim07G0241500 Rhododendron simsii HOM05D006275 ORTHO05D007839 1.2e-33 147.1 101 70.3
RhsimUnG0236400 Rhododendron simsii HOM05D006275 ORTHO05D007839 1.2e-33 147.1 101 70.3
Solyc04g080630.4 Solanum lycopersicum HOM05D006275 ORTHO05D007839 1.0e-32 144.1 99 68.7
Sopen04g034220 Solanum pennellii HOM05D006275 ORTHO05D007839 1.0e-32 144.1 99 68.7
Pp3c4_22510 Physcomitrium patens HOM05D006275 ORTHO05D007839 2.9e-32 142.5 99 65.7
PGSC0003DMG400003696 Solanum tuberosum HOM05D006275 ORTHO05D007839 2.9e-32 142.5 99 68.7
Pp3c3_430 Physcomitrium patens HOM05D006275 ORTHO05D007839 4.2e-31 138.7 99 64.6
Pp3c13_7030 Physcomitrium patens HOM05D006275 ORTHO05D007839 1.6e-30 136.7 99 60.6
AagrBONN_evm.TU.Sc2ySwM_368.2624 Anthoceros agrestis HOM05D006275 ORTHO05D007839 2.3e-29 132.9 114 59.6
FAN20G1429 Fragaria x ananassa HOM05D006275 ORTHO05D007839 4.3e-28 128.6 75 73.3
Duzib041G0262 Durio zibethinus HOM05D006275 ORTHO05D007839 2.8e-27 125.9 76 77.6
Mapoly0051s0056 Marchantia polymorpha HOM05D006275 ORTHO05D007839 2.8e-27 125.9 100 55.0
QL02p009087 Quercus lobata HOM05D006275 ORTHO05D007839 6.2e-27 124.8 76 76.3
CBR_g52135 Chara braunii HOM05D006275 ORTHO05D007839 1.2e-25 120.6 103 56.3
SEGI_04934 Sequoiadendron giganteum HOM05D006275 ORTHO05D007839 1.3e-24 117.1 100 57.0
SMO117G0016 Selaginella moellendorffii HOM05D006275 ORTHO05D007839 2.9e-24 115.9 98 55.1
Os01g0633000 Oryza sativa ssp. japonica HOM05D006275 ORTHO05D007839 8.4e-24 114.4 70 68.6
Zm00001eb159080 Zea mays HOM05D006275 ORTHO05D007839 1.1e-23 114.0 70 68.6
Cre08.g365400 Chlamydomonas reinhardtii HOM05D006275 ORTHO05D007839 4.3e-20 102.1 102 49.0
BcaC09g48250 Brassica carinata HOM05D006275 ORTHO05D007839 2.8e-19 99.4 52 76.9
MCO12G376 Micromonas commoda HOM05D006275 ORTHO05D007839 2.0e-17 93.2 96 44.8
TWI56G0783 Tripterygium wilfordii HOM05D006275 ORTHO05D007839 7.2e-15 84.7 58 72.4
Gohir.D12G058400 Gossypium hirsutum HOM05D006275 ORTHO05D007839 7.4e-12 74.7 39 82.1
Gorai.010G176600 Gossypium raimondii HOM05D006275 ORTHO05D007839 1.1e-10 70.9 39 79.5
BcaC05g28396 Brassica carinata HOM05D006275 ORTHO05D003437 5.0e-08 62.0 54 59.3


User provided reference genes

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