Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 2.0e-77 292.4 146 100.0
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 2.1e-63 245.7 135 91.9
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 2.7e-58 228.8 146 78.8
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 1.0e-57 226.9 143 78.3
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 1.4e-54 216.5 147 74.1
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 3.4e-53 211.8 150 72.0
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 6.4e-52 207.6 146 74.0
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 9.3e-51 203.8 134 74.6
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 7.9e-50 200.7 139 74.8
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 2.1e-47 192.6 138 68.8
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 1.8e-46 189.5 146 66.4
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 2.0e-45 186.0 146 65.8
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 7.1e-43 177.6 146 62.3
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 2.3e-41 172.6 146 63.7
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 3.0e-41 172.2 146 61.0
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 4.8e-39 164.9 148 58.1
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 4.8e-39 164.9 149 60.4
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 1.4e-38 163.3 137 66.4
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 6.9e-38 161.0 144 58.3
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 7.7e-37 157.5 147 58.5
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 1.7e-36 156.4 149 53.7
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 2.2e-36 156.0 148 52.0
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 1.4e-35 153.3 147 51.7
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 2.5e-35 152.5 148 54.1
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.2e-35 151.8 146 53.4
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 7.2e-35 151.0 145 51.0
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 1.2e-34 150.2 151 54.3
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.2e-34 150.2 145 51.0
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 1.2e-34 150.2 148 53.4
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.1e-34 149.4 148 50.0
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 2.1e-34 149.4 146 52.7
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 2.7e-34 149.1 131 55.7
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 3.6e-34 148.7 154 55.2
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 1.0e-33 147.1 154 51.9
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 1.4e-33 146.7 148 49.3
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.4e-33 146.7 148 50.0
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.4e-33 146.7 148 50.0
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 1.8e-33 146.4 139 54.0
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 2.5e-32 142.5 144 52.8
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 2.5e-32 142.5 145 51.7
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 4.3e-32 141.7 149 52.3
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 9.7e-32 140.6 142 52.1
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 9.7e-32 140.6 149 51.7
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 9.7e-32 140.6 147 50.3
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.3e-31 140.2 147 50.3
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.3e-31 140.2 149 51.7
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 2.2e-31 139.4 146 50.7
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 6.3e-31 137.9 142 51.4
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 8.2e-31 137.5 147 49.7
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 1.4e-30 136.7 142 47.9
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 9.1e-30 134.0 132 52.3
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 3.4e-29 132.1 149 50.3
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 4.5e-29 131.7 125 51.2
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 1.0e-28 130.6 157 48.4
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 2.2e-28 129.4 134 54.5
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 2.9e-28 129.0 118 54.2
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 5.0e-28 128.3 140 47.1
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 8.5e-28 127.5 150 50.7
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 3.2e-27 125.6 150 50.0
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 5.5e-27 124.8 150 49.3
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 7.2e-27 124.4 146 47.9
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 1.6e-26 123.2 102 63.7
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 1.6e-26 123.2 102 63.7
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 2.7e-26 122.5 140 49.3
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 3.6e-26 122.1 148 43.9
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 6.1e-26 121.3 152 50.0
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.0e-25 120.6 134 48.5
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 1.4e-25 120.2 136 45.6
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.4e-25 120.2 150 47.3
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 2.3e-25 119.4 148 45.3
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 3.0e-25 119.0 142 44.4
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 5.1e-25 118.2 146 43.2
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 6.7e-25 117.9 148 45.3
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 6.7e-25 117.9 144 44.4
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.1e-24 117.1 150 47.3
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 1.1e-24 117.1 146 45.9
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.1e-24 117.1 148 44.6
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 2.0e-24 116.3 137 47.4
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 3.3e-24 115.5 136 49.3
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 4.4e-24 115.2 149 44.3
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 7.4e-24 114.4 147 45.6
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 7.4e-24 114.4 147 45.6
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 7.4e-24 114.4 144 43.1
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 7.4e-24 114.4 144 43.1
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.3e-23 113.6 150 45.3
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 2.2e-23 112.8 111 57.7
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 3.7e-23 112.1 142 47.2
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.4e-22 110.2 138 46.4
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.4e-22 110.2 138 46.4
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 1.8e-22 109.8 140 42.1
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 2.4e-22 109.4 140 47.1
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 1.2e-21 107.1 137 45.3
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 1.5e-21 106.7 150 42.0
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 2.0e-21 106.3 143 42.7
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 2.6e-21 105.9 132 47.0
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 2.6e-21 105.9 144 41.7
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 4.5e-21 105.1 166 43.4
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 7.7e-21 104.4 134 44.0
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 1.7e-20 103.2 147 44.2
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 2.9e-20 102.4 120 45.0
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 3.8e-20 102.1 135 40.7
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 5.0e-20 101.7 162 40.1
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 5.0e-20 101.7 144 40.3
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 5.0e-20 101.7 156 42.3
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 1.1e-19 100.5 136 43.4
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.1e-19 100.5 137 40.1
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.1e-19 100.5 115 47.8
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 1.9e-19 99.8 135 42.2
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 3.2e-19 99.0 165 40.0
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 4.2e-19 98.6 130 41.5
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 5.5e-19 98.2 130 40.8
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 7.2e-19 97.8 163 36.8
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 9.4e-19 97.4 135 43.0
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 1.2e-18 97.1 115 47.0
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 2.7e-18 95.9 130 40.8
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 2.7e-18 95.9 130 40.8
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 2.7e-18 95.9 115 46.1
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 2.7e-18 95.9 141 41.1
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 3.6e-18 95.5 130 40.8
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 4.7e-18 95.1 130 40.8
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 6.1e-18 94.7 139 39.6
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 8.0e-18 94.4 130 40.0
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 8.0e-18 94.4 138 38.4
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 8.0e-18 94.4 164 40.2
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 2.3e-17 92.8 130 39.2
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 6.7e-17 91.3 131 45.8
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 8.8e-17 90.9 130 41.5
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 1.1e-16 90.5 131 39.7
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 1.5e-16 90.1 131 42.0
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 1.5e-16 90.1 124 42.7
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.2e-15 86.3 131 38.9
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 4.8e-15 85.1 154 35.1
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 8.2e-15 84.3 151 36.4
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.1e-14 84.0 103 45.6
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.4e-14 83.6 132 35.6
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 2.4e-14 82.8 152 41.4
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 3.1e-14 82.4 142 37.3
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 4.1e-14 82.0 102 46.1
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 5.3e-14 81.6 140 35.7
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 9.1e-14 80.9 137 37.2
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.2e-13 80.5 91 45.1
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 1.2e-13 80.5 153 38.6
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 2.6e-13 79.3 107 46.7
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 5.9e-13 78.2 104 39.4
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 7.7e-13 77.8 132 32.6
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 7.7e-13 77.8 135 34.8
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.0e-12 75.1 149 29.5
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 5.0e-12 75.1 141 34.8
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.9e-11 73.2 61 59.0
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.2e-11 72.4 146 30.8
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 4.2e-11 72.0 123 38.2
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.5e-11 71.6 138 33.3
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 7.2e-11 71.2 148 33.1
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.2e-10 70.5 136 33.8
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 2.1e-10 69.7 131 35.9
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 2.7e-10 69.3 87 46.0
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.7e-10 68.6 137 29.9
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.1e-10 68.2 149 32.9
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 8.0e-10 67.8 95 40.0
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 8.0e-10 67.8 138 30.4
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.0e-09 65.9 139 32.4
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 5.2e-09 65.1 160 31.2
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 2.0e-08 63.2 153 34.6
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 5.7e-08 61.6 50 58.0
Nitab4.5_0004768g0030 Nicotiana tabacum HOM05D004108 ORTHO05D004849 2.2e-07 59.7 102 40.2
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 3.7e-07 58.9 57 52.6
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.1e-06 57.4 126 29.4
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 2.4e-06 56.2 136 32.4
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 4.1e-06 55.5 40 60.0
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 4.1e-06 55.5 111 32.4
Nitab4.5_0002105g0080 Nicotiana tabacum HOM05D003374 ORTHO05D009470 9.1e-06 54.3 112 32.1
Sp3g31120 Schrenkiella parvula HOM05D003374 ORTHO05D009470 9.1e-06 54.3 98 33.7


User provided reference genes

Program Settings