Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 6.6e-165 583.9 293 100.0
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 4.0e-154 548.1 291 93.5
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.8e-147 525.4 291 89.0
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 2.6e-145 518.8 291 88.0
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 1.0e-141 506.9 291 85.2
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 4.2e-135 485.0 291 82.8
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 4.2e-135 485.0 291 82.8
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 3.0e-133 478.8 291 81.8
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 6.7e-133 477.6 291 82.1
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 1.1e-130 470.3 291 80.1
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 4.5e-129 464.9 291 79.7
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 7.2e-127 457.6 291 78.7
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 7.2e-127 457.6 291 78.7
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 6.1e-126 454.5 292 74.3
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 7.9e-126 454.1 292 74.3
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 1.4e-125 453.4 292 75.0
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 3.9e-125 451.8 284 77.1
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 3.3e-124 448.7 292 74.3
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 5.7e-124 448.0 292 74.7
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 7.4e-124 447.6 292 74.0
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 4.8e-123 444.9 292 74.3
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 6.3e-123 444.5 292 74.0
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.2e-123 444.1 292 74.0
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.4e-122 443.4 292 74.3
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-122 443.4 292 74.3
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 5.3e-122 441.4 292 74.0
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 9.1e-122 440.7 292 71.9
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 3.5e-121 438.7 294 71.8
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 5.9e-121 438.0 294 71.8
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 1.3e-120 436.8 292 70.2
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 1.7e-120 436.4 292 72.3
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 1.7e-120 436.4 294 71.1
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 2.9e-120 435.6 293 71.3
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 1.9e-119 433.0 291 70.8
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 1.9e-119 433.0 303 69.3
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.9e-119 433.0 301 69.1
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 4.2e-119 431.8 291 72.9
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 9.4e-119 430.6 292 68.8
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.2e-118 430.3 292 70.2
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 1.6e-118 429.9 292 70.5
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 2.1e-118 429.5 292 69.5
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 2.7e-118 429.1 290 72.8
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 3.6e-118 428.7 301 68.8
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 4.7e-118 428.3 292 69.5
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 6.1e-118 427.9 292 68.8
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 8.0e-118 427.6 292 70.9
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.4e-117 426.8 292 68.8
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 2.3e-117 426.0 291 72.5
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 2.3e-117 426.0 292 70.9
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 5.2e-117 424.9 291 70.1
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 7.4e-116 421.0 301 68.8
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 7.4e-116 421.0 291 69.8
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 7.4e-116 421.0 291 69.1
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 9.7e-116 420.6 291 69.4
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 1.3e-115 420.2 291 69.1
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 4.8e-115 418.3 292 68.5
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 6.3e-115 417.9 291 69.8
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 6.3e-115 417.9 292 69.5
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 3.1e-114 415.6 292 67.8
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 4.1e-114 415.2 292 66.8
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 7.0e-114 414.5 292 67.5
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.2e-113 413.7 313 65.8
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 1.0e-112 410.6 292 67.1
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.1e-111 407.1 289 68.5
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.9e-111 406.4 281 71.5
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 2.5e-111 406.0 324 62.0
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 3.2e-111 405.6 287 69.0
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 4.2e-111 405.2 291 64.9
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 9.4e-111 404.1 287 69.0
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.2e-110 403.7 329 62.0
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-110 403.7 317 62.8
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-110 403.7 317 62.8
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 1.6e-110 403.3 292 67.1
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 1.6e-110 403.3 292 67.1
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 4.7e-110 401.7 292 66.8
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.1e-110 401.4 317 62.5
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 8.0e-110 401.0 296 66.6
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.0e-109 400.6 292 65.8
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.0e-109 400.6 294 67.0
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 3.0e-109 399.1 292 65.8
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 5.2e-109 398.3 292 65.4
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 5.2e-109 398.3 292 66.4
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 5.2e-109 398.3 292 65.8
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 6.7e-109 397.9 292 65.8
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 6.7e-109 397.9 292 65.8
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 6.7e-109 397.9 318 63.2
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.2e-108 397.1 292 66.8
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 3.3e-108 395.6 292 66.1
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 7.5e-108 394.4 329 61.4
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 1.3e-107 393.7 292 65.1
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 4.8e-107 391.7 292 64.4
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 3.1e-106 389.0 292 63.7
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 6.5e-104 381.3 292 63.0
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 5.5e-103 378.3 291 63.2
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 2.7e-102 375.9 283 62.9
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 1.8e-101 373.2 292 62.7
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.0e-101 372.5 291 63.6
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 3.0e-101 372.5 249 72.3
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 3.4e-100 369.0 291 62.2
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 8.3e-99 364.4 287 62.7
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.3e-96 357.1 291 60.8
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.5e-95 352.8 226 74.3
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.0e-93 347.4 227 73.1
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 3.0e-93 345.9 293 60.4
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 5.2e-93 345.1 291 61.9
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 5.2e-93 345.1 286 58.7
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 5.2e-93 345.1 227 73.6
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 6.8e-93 344.7 226 76.1
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 2.8e-86 322.8 226 71.7
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.1e-86 321.6 317 54.9
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 2.9e-83 312.8 226 65.9
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 6.4e-83 311.6 292 53.4
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 4.3e-79 298.9 281 52.3
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 7.3e-79 298.1 218 66.5
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 3.6e-78 295.8 288 52.1
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 4.7e-78 295.4 298 53.0
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 1.4e-77 293.9 291 49.5
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 3.1e-77 292.7 291 50.9
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 9.2e-74 281.2 293 52.6
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 2.1e-73 280.0 291 51.9
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.3e-71 272.7 280 52.9
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 6.6e-64 248.4 292 47.9
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 3.8e-59 232.6 201 58.7
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.7e-57 226.5 152 68.4
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 1.2e-52 211.1 303 40.3
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 5.1e-48 195.7 135 67.4
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 4.5e-36 156.0 328 32.9
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 3.5e-33 146.4 319 33.9
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.0e-33 145.6 95 72.6
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.4e-29 134.4 200 41.0
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 4.0e-29 132.9 134 50.0
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.6e-22 110.9 87 64.4
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 4.2e-18 96.3 110 51.8
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 9.4e-18 95.1 110 51.8
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-16 91.7 58 75.9
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-16 91.3 58 75.9
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 2.0e-15 87.4 298 22.8
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.3e-14 84.7 58 69.0
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 1.8e-13 80.9 44 86.4
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-08 64.3 44 75.0
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 3.9e-08 63.2 35 85.7
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 9.7e-07 58.5 35 77.1


User provided reference genes

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