Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 8.1e-86 320.5 173 100.0
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 2.1e-78 295.8 176 92.6
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 4.2e-74 281.6 174 84.5
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 3.0e-72 275.4 175 82.3
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 9.3e-66 253.8 176 77.3
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 9.3e-66 253.8 176 77.3
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 6.0e-65 251.1 170 78.2
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 5.1e-64 248.1 172 76.7
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 1.9e-63 246.1 176 77.3
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 9.6e-63 243.8 172 75.6
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 1.8e-61 239.6 170 73.5
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 6.9e-61 237.7 169 71.6
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 9.0e-61 237.3 170 75.3
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 1.2e-60 236.9 171 70.8
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 1.5e-60 236.5 173 70.5
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 2.0e-60 236.1 171 71.9
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.3e-59 233.4 175 72.6
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 2.5e-58 229.2 172 69.2
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.5e-58 229.2 172 69.2
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 7.1e-58 227.6 172 69.2
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 7.1e-58 227.6 172 68.6
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 1.2e-57 226.9 153 73.2
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.6e-57 226.5 172 68.6
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 4.6e-57 224.9 172 67.4
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 6.0e-57 224.6 170 68.8
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 8.7e-56 220.7 170 68.2
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 1.5e-55 219.9 170 68.8
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 2.5e-55 219.2 170 65.9
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 5.7e-55 218.0 153 73.9
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 9.6e-55 217.2 174 66.7
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 9.6e-55 217.2 176 62.5
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.3e-54 216.9 146 75.3
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 3.7e-54 215.3 146 74.7
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 4.8e-54 214.9 176 65.3
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 6.2e-54 214.5 148 72.3
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 8.2e-54 214.2 172 68.0
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 4.1e-53 211.8 171 63.7
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 2.6e-52 209.1 169 67.5
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 3.4e-52 208.8 178 65.2
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 7.6e-52 207.6 152 67.1
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 1.7e-51 206.5 172 66.3
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 2.2e-51 206.1 171 65.5
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 2.2e-51 206.1 173 63.0
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 5.0e-51 204.9 155 68.4
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 5.0e-51 204.9 235 52.8
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 1.9e-50 203.0 171 61.4
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 3.2e-50 202.2 170 65.9
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 3.2e-50 202.2 170 64.7
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.2e-50 202.2 174 60.3
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 9.3e-50 200.7 174 59.8
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 9.3e-50 200.7 179 55.9
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 1.6e-49 199.9 176 58.0
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.7e-49 199.1 156 67.3
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 2.7e-49 199.1 170 59.4
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 4.6e-49 198.4 143 71.3
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 6.1e-49 198.0 150 69.3
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.8e-48 196.4 170 64.1
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 1.8e-48 196.4 143 71.3
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 2.3e-48 196.1 183 54.6
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 1.9e-47 193.0 205 56.1
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 2.5e-47 192.6 141 68.8
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 4.3e-47 191.8 272 46.0
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.3e-46 190.3 169 60.4
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.3e-46 190.3 154 63.6
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 1.3e-46 190.3 143 65.7
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 1.3e-46 190.3 143 65.7
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.3e-46 190.3 146 65.8
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 2.2e-46 189.5 171 59.1
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 2.8e-46 189.1 148 65.5
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 2.8e-46 189.1 182 61.0
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 4.8e-46 188.3 169 61.5
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 1.1e-45 187.2 170 61.8
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 2.4e-45 186.0 153 65.4
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 4.1e-45 185.3 143 65.7
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 4.1e-45 185.3 181 60.8
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 9.0e-45 184.1 170 58.8
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 1.2e-44 183.7 145 61.4
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 1.5e-44 183.3 175 58.9
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 2.0e-44 183.0 143 65.0
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 2.0e-44 183.0 141 62.4
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 2.0e-44 183.0 141 62.4
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 2.6e-44 182.6 149 62.4
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 2.6e-44 182.6 143 65.0
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 2.6e-44 182.6 143 65.0
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 3.4e-44 182.2 146 63.0
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 3.4e-44 182.2 141 62.4
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 4.5e-44 181.8 144 64.6
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 4.5e-44 181.8 141 62.4
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.0e-43 180.6 143 61.5
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.3e-43 180.3 174 58.0
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 2.9e-43 179.1 148 61.5
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 3.8e-43 178.7 143 61.5
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 3.8e-43 178.7 171 52.6
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 3.8e-43 178.7 121 71.9
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 8.5e-43 177.6 169 53.3
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.4e-42 176.8 172 53.5
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 1.4e-42 176.8 171 54.4
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 5.5e-42 174.9 144 60.4
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 7.2e-42 174.5 175 54.9
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 7.2e-42 174.5 170 55.9
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 3.6e-41 172.2 151 62.3
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 4.6e-41 171.8 142 62.0
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 4.6e-41 171.8 176 55.7
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 1.8e-40 169.9 177 54.2
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 1.1e-39 167.2 169 55.0
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 1.7e-38 163.3 227 44.9
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 2.2e-38 162.9 146 58.9
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 1.8e-37 159.8 181 54.7
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 9.1e-37 157.5 137 58.4
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 3.8e-35 152.1 119 63.0
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 3.8e-35 152.1 121 60.3
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 5.5e-34 148.3 140 55.0
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 9.4e-34 147.5 151 52.3
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 6.1e-33 144.8 140 52.9
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 7.9e-33 144.4 117 59.0
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 1.0e-32 144.1 120 57.5
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.3e-30 137.1 119 55.5
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 3.7e-30 135.6 169 48.5
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 2.4e-29 132.9 248 36.3
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.2e-28 130.6 149 49.0
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.2e-28 130.6 149 49.0
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.0e-28 129.8 151 47.0
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 2.6e-28 129.4 117 58.1
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 1.7e-27 126.7 154 44.2
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 3.8e-27 125.6 128 51.6
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 3.8e-27 125.6 128 51.6
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 4.7e-25 118.6 140 46.4
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 5.2e-24 115.2 197 39.1
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 5.7e-23 111.7 99 54.5
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 5.7e-23 111.7 139 43.9
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.7e-22 110.2 121 54.5
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 9.1e-21 104.4 103 49.5
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 2.0e-20 103.2 82 64.6
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 9.4e-18 94.4 115 47.0
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 4.7e-17 92.0 172 37.8
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 3.7e-14 82.4 90 52.2
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 1.8e-13 80.1 90 51.1
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 3.1e-13 79.3 90 52.2
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 3.1e-13 79.3 90 52.2
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 4.5e-12 75.5 90 48.9
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 3.8e-11 72.4 86 48.8
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 3.8e-11 72.4 86 48.8
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 1.6e-09 67.0 48 64.6
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 6.8e-08 61.6 58 56.9
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 5.7e-07 58.5 42 66.7
CDE04G2695 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 2.8e-06 56.2 44 68.2


User provided reference genes

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