Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 5.7e-269 930.2 445 100.0
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 2.6e-229 798.5 446 89.0
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 6.2e-207 724.2 446 80.5
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 1.5e-184 649.8 445 73.3
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 1.5e-176 623.2 463 67.0
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 8.5e-172 607.4 460 67.4
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 1.9e-171 606.3 474 65.0
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 1.6e-170 603.2 464 65.1
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 3.3e-168 595.5 453 65.3
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 1.5e-163 580.1 479 61.8
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 1.7e-159 566.6 483 58.8
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 1.3e-148 530.4 480 57.5
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 2.9e-148 529.3 480 58.1
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 8.6e-148 527.7 467 57.0
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 6.8e-145 518.1 471 55.8
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 2.2e-143 513.1 472 55.3
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 1.1e-142 510.8 477 55.1
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 1.4e-142 510.4 471 55.2
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 1.4e-142 510.4 471 55.2
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 4.6e-141 505.4 477 55.1
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 5.0e-140 501.9 477 55.6
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 1.1e-139 500.7 434 59.7
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 3.3e-139 499.2 478 54.4
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 3.3e-139 499.2 470 54.0
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 7.3e-139 498.0 470 54.5
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 7.3e-139 498.0 473 54.5
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 9.5e-139 497.7 473 54.3
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 2.8e-138 496.1 478 54.2
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 1.4e-134 483.8 485 51.3
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 3.2e-134 482.6 486 52.3
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 4.1e-134 482.3 464 54.7
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 5.4e-134 481.9 474 52.7
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 3.5e-133 479.2 466 52.8
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 1.0e-132 477.6 481 53.2
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 3.0e-132 476.1 480 51.9
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 5.1e-132 475.3 480 52.9
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.9e-131 473.4 484 52.1
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 3.3e-131 472.6 477 52.8
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 2.1e-130 469.9 471 51.8
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 4.0e-129 465.7 467 52.9
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 6.8e-129 464.9 458 53.9
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 1.5e-128 463.8 474 52.5
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 2.6e-128 463.0 462 54.3
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 2.6e-128 463.0 454 53.1
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 3.4e-128 462.6 458 53.7
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 3.4e-128 462.6 455 52.7
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 9.9e-128 461.1 462 53.9
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.7e-127 460.3 463 54.0
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 1.7e-127 460.3 456 52.6
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 6.4e-127 458.4 454 53.5
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 8.3e-127 458.0 480 51.5
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 2.4e-126 456.4 451 52.3
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 4.6e-125 452.2 467 49.9
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 6.0e-125 451.8 465 51.0
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 7.8e-125 451.4 454 51.8
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 3.9e-124 449.1 460 51.5
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 1.1e-123 447.6 463 50.5
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 1.5e-123 447.2 478 49.2
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 3.3e-123 446.0 465 50.3
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 1.6e-122 443.7 463 50.1
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 1.6e-122 443.7 456 51.3
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 2.1e-122 443.4 479 48.6
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 3.6e-122 442.6 487 49.9
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 5.2e-121 438.7 454 50.4
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 2.0e-120 436.8 459 50.8
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 3.4e-120 436.0 457 50.8
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 7.6e-120 434.9 476 47.9
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 1.4e-118 430.6 476 47.5
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 2.4e-118 429.9 476 47.5
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 3.2e-118 429.5 458 50.9
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 9.0e-113 411.4 459 49.2
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 5.8e-112 408.7 439 47.4
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 9.9e-112 407.9 468 47.9
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 1.9e-110 403.7 450 46.9
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 2.1e-106 390.2 454 46.0
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 2.9e-103 379.8 481 45.3
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 1.1e-102 377.9 412 50.2
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 7.9e-101 371.7 475 45.3
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 1.3e-100 370.9 450 45.6
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 8.7e-100 368.2 452 45.4
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.9e-99 367.1 434 47.7
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 2.8e-98 363.2 437 45.3
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 6.2e-98 362.1 455 45.3
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 1.5e-96 357.5 454 44.7
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 4.5e-96 355.9 454 44.9
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 9.3e-94 348.2 510 40.8
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 1.0e-92 344.7 462 42.0
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 1.0e-92 344.7 451 43.2
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 1.0e-92 344.7 451 43.2
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 1.3e-92 344.4 330 54.5
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 7.4e-91 338.6 442 42.5
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 1.3e-90 337.8 347 49.3
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 2.4e-89 333.6 441 42.4
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 5.3e-89 332.4 446 42.8
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 6.9e-89 332.0 443 42.7
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 3.8e-87 326.2 440 41.8
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 1.0e-84 318.2 452 41.2
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 5.1e-84 315.8 313 53.4
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 7.4e-83 312.0 441 41.0
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 6.7e-76 288.9 311 51.8
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 9.4e-70 268.5 284 51.4
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 4.2e-62 243.0 502 32.3
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 4.4e-59 233.0 376 38.6
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 5.0e-55 219.5 283 46.6
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 4.0e-52 209.9 332 39.5
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 5.7e-51 206.1 252 45.2
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 6.8e-44 182.6 531 28.2
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 1.2e-43 181.8 219 49.3
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 9.8e-43 178.7 163 54.0
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 3.5e-40 170.2 355 33.5
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 7.8e-32 142.5 556 23.7
HPP92_013381 Vanilla planifolia HOM05D006323 ORTHO05D007827 7.3e-30 136.0 183 41.5
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 5.2e-28 129.8 146 41.8
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 9.8e-27 125.6 283 34.6
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 1.3e-26 125.2 133 47.4
FvH4_3g44630 Fragaria vesca HOM05D006323 ORTHO05D007827 1.7e-23 114.8 91 56.0
TAR623G1714 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.1e-20 105.5 102 51.0
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.8e-20 104.8 104 48.1
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 3.7e-18 97.1 75 68.0
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 4.9e-18 96.7 72 69.4
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 1.1e-17 95.5 118 42.4
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 2.4e-17 94.4 177 33.3
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 9.5e-14 82.4 101 43.6
TAR623G1335 Trochodendron aralioides HOM05D006323 ORTHO05D007827 8.9e-12 75.9 61 52.5
Oeu037483.1 Olea europaea HOM05D006323 ORTHO05D007827 5.4e-09 66.6 114 41.2


User provided reference genes

Program Settings