Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 1.7e-210 735.7 365 100.0
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 1.5e-166 589.7 382 83.2
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 2.3e-146 522.7 386 74.9
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 5.2e-127 458.4 383 70.0
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 6.8e-127 458.0 378 69.0
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 2.5e-121 439.5 389 67.1
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 1.6e-120 436.8 456 57.7
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 7.1e-116 421.4 391 64.7
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 7.6e-110 401.4 385 61.6
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 1.1e-108 397.5 385 61.6
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 7.9e-107 391.3 393 60.6
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 9.6e-105 384.4 392 59.2
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 1.2e-102 377.5 384 59.6
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.4e-102 375.9 394 58.1
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 4.5e-102 375.6 384 58.3
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 4.9e-101 372.1 366 58.7
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 4.9e-101 372.1 404 55.7
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 4.9e-101 372.1 389 58.1
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 6.5e-101 371.7 393 58.3
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 8.4e-101 371.3 393 58.3
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 1.4e-100 370.5 373 59.8
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.9e-100 370.2 392 57.7
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.2e-100 369.4 393 58.3
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 9.3e-100 367.9 371 61.7
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 1.2e-99 367.5 379 61.5
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 1.6e-99 367.1 383 58.2
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.1e-99 366.7 388 57.2
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 6.0e-99 365.2 387 57.9
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 1.1e-97 360.9 395 55.9
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 1.9e-97 360.1 394 54.8
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 1.8e-95 353.6 442 52.3
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 4.5e-94 349.0 370 59.5
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 2.5e-92 343.2 428 52.1
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 2.3e-90 336.7 374 54.5
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 6.7e-90 335.1 373 53.4
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.3e-88 328.6 374 52.9
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 2.4e-87 326.6 372 53.5
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 4.1e-87 325.9 391 50.9
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 3.4e-86 322.8 379 52.2
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 1.1e-84 317.8 355 54.6
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 3.2e-84 316.2 336 57.1
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 5.5e-84 315.5 268 65.3
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.6e-83 313.9 371 51.5
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 4.6e-83 312.4 392 52.6
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 2.3e-82 310.1 379 52.5
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 6.7e-82 308.5 386 50.8
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 2.0e-81 307.0 379 52.2
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 4.3e-81 305.8 394 51.8
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 4.3e-81 305.8 394 51.8
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 1.3e-80 304.3 384 51.6
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.7e-80 303.9 381 50.7
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 6.3e-80 302.0 400 49.8
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 6.3e-80 302.0 374 48.9
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.4e-79 300.8 374 48.7
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 4.1e-79 299.3 373 50.4
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.2e-78 297.7 364 50.3
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.2e-78 297.7 374 48.7
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 4.5e-78 295.8 381 50.7
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 2.2e-77 293.5 377 49.1
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 2.5e-76 290.0 375 49.6
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.2e-76 289.7 364 49.5
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 5.5e-76 288.9 363 50.1
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 7.2e-76 288.5 379 48.3
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 7.2e-76 288.5 379 48.3
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.2e-75 287.7 370 48.9
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 1.6e-75 287.3 370 48.1
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 2.1e-75 287.0 379 48.3
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.7e-75 286.6 381 47.8
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 3.6e-75 286.2 381 48.6
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 3.6e-75 286.2 380 47.4
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 3.0e-74 283.1 377 47.2
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 2.0e-73 280.4 384 49.0
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 5.7e-73 278.9 370 49.7
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 1.3e-72 277.7 369 47.4
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.7e-72 277.3 374 47.9
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 2.2e-72 276.9 369 46.9
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.4e-71 274.2 376 47.6
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 1.4e-71 274.2 378 46.6
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 1.8e-71 273.9 377 46.2
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 2.4e-71 273.5 369 46.9
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 7.0e-71 271.9 369 46.1
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 7.0e-71 271.9 372 48.7
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 9.1e-71 271.6 383 46.2
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.6e-70 270.8 386 46.4
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 2.0e-70 270.4 391 46.3
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 4.5e-70 269.2 397 46.1
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.0e-69 268.1 389 43.7
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 2.9e-69 266.5 376 47.1
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 5.2e-66 255.8 343 47.2
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 3.3e-65 253.1 394 43.1
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 2.2e-64 250.4 372 43.5
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 5.9e-62 242.3 378 45.5
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 2.2e-61 240.4 343 45.8
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 1.6e-59 234.2 365 43.3
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 8.0e-59 231.9 389 42.2
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 1.8e-58 230.7 388 43.3
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 3.4e-57 226.5 370 43.8
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 9.8e-57 224.9 354 43.2
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.3e-56 224.6 192 62.5
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 1.3e-56 224.6 364 43.4
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.7e-56 224.2 364 38.5
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 5.4e-55 219.2 296 48.0
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 1.3e-48 198.0 356 39.0
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 3.7e-48 196.4 271 48.0
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 9.2e-47 191.8 361 40.2
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.6e-46 191.0 279 46.2
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 5.9e-46 189.1 377 37.9
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 5.9e-46 189.1 388 38.9
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 1.0e-45 188.3 351 39.9
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 1.7e-45 187.6 283 45.6
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 2.3e-45 187.2 210 51.0
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 8.6e-45 185.3 374 38.8
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.4e-42 177.9 192 52.6
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 6.8e-42 175.6 335 39.1
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 8.3e-40 168.7 197 48.7
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 9.2e-39 165.2 121 79.3
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.5e-36 157.9 352 34.9
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 1.9e-36 157.5 259 44.0
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 4.3e-36 156.4 349 35.0
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 5.6e-36 156.0 223 42.6
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 6.2e-35 152.5 137 54.7
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 8.0e-35 152.1 376 32.2
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 2.0e-33 147.5 363 33.3
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 7.5e-33 145.6 357 33.1
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 9.8e-33 145.2 117 65.0
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 2.0e-30 137.5 187 40.1
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 5.0e-29 132.9 189 39.2
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 1.9e-20 104.4 121 52.1
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.8e-18 97.8 190 35.8
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.2e-17 95.1 150 38.0
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 7.6e-17 92.4 150 37.3
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 2.1e-14 84.3 164 32.9
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 1.1e-12 78.6 354 26.6
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.5e-12 77.4 167 29.9
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 3.1e-10 70.5 161 32.3
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 5.2e-10 69.7 102 40.2
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.0e-09 67.8 172 32.0
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 7.6e-09 65.9 229 27.5
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.7e-08 64.7 161 28.0
CDE04G1528 Ceratophyllum demersum HOM05D001735 ORTHO05D001640 6.4e-08 62.8 222 25.7
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 1.1e-07 62.0 159 28.9
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 1.1e-07 62.0 159 28.9
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 1.1e-07 62.0 159 28.9
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 1.1e-07 62.0 159 28.9
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 1.1e-07 62.0 159 28.9
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 1.4e-07 61.6 87 43.7
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 2.4e-07 60.8 159 28.3
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 2.4e-07 60.8 159 27.7
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 5.4e-07 59.7 159 28.3
MBI11_g00913_MAGBIO Magnolia biondii HOM05D001735 ORTHO05D001640 3.5e-06 57.0 222 27.0


User provided reference genes

Program Settings