Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 8.7e-290 999.6 501 100.0
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.8e-255 885.6 503 89.1
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 2.1e-219 765.8 501 79.4
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.3e-216 756.5 497 79.1
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 1.1e-178 630.6 519 67.1
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 1.8e-165 586.6 513 61.4
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.4e-154 550.4 532 58.6
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.4e-154 550.4 524 61.1
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 2.2e-152 543.1 539 59.7
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 4.9e-152 542.0 555 56.6
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 8.8e-141 504.6 575 52.9
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 2.7e-118 429.9 499 48.9
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 3.1e-114 416.4 491 48.3
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.8e-109 400.6 496 47.0
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 7.0e-106 388.7 502 46.2
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 2.7e-105 386.7 502 45.2
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 4.5e-105 386.0 502 46.2
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 5.2e-101 372.5 497 45.7
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 3.4e-100 369.8 504 44.2
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 1.7e-99 367.5 492 44.3
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 8.3e-99 365.2 507 46.0
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 3.2e-98 363.2 505 43.2
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 5.4e-98 362.5 501 43.1
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 1.2e-97 361.3 494 43.1
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 3.6e-94 349.7 371 52.0
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 6.1e-94 349.0 496 41.7
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.5e-92 344.4 484 43.4
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.0e-92 344.0 499 41.9
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 2.6e-92 343.6 508 40.9
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 9.8e-92 341.7 500 40.8
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.7e-91 340.9 505 41.6
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 8.3e-91 338.6 499 41.1
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.2e-90 336.7 379 50.4
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 5.4e-90 335.9 521 39.7
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.7e-89 333.6 498 42.6
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 6.0e-89 332.4 517 40.2
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 1.0e-88 331.6 503 40.2
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 2.5e-87 327.0 386 46.1
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 5.6e-87 325.9 562 38.8
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.6e-86 324.3 498 41.4
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.1e-85 320.1 496 40.9
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 2.4e-82 310.5 506 40.5
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 5.4e-82 309.3 500 39.8
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 3.0e-80 303.5 507 39.8
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.8e-77 294.3 481 38.5
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 4.1e-74 283.1 511 37.6
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 7.1e-74 282.3 510 36.1
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 9.2e-74 282.0 503 35.6
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 7.8e-73 278.9 508 34.6
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 3.3e-71 273.5 505 35.8
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 5.6e-71 272.7 504 36.3
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 7.3e-71 272.3 501 36.7
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.2e-70 271.6 510 35.7
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.2e-70 271.6 390 41.5
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 6.2e-70 269.2 505 36.2
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 3.1e-69 266.9 497 35.6
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 8.9e-69 265.4 511 35.2
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.2e-68 265.0 504 35.5
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 1.5e-68 264.6 397 40.3
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 4.4e-68 263.1 517 35.4
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 7.6e-68 262.3 497 33.8
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 9.9e-68 261.9 513 34.3
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 9.9e-68 261.9 513 34.3
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 9.9e-68 261.9 425 38.1
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.3e-67 261.5 511 35.0
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.3e-67 261.5 511 35.0
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 2.9e-67 260.4 465 36.3
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 3.2e-66 256.9 500 35.8
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 1.2e-65 255.0 499 33.9
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 7.8e-65 252.3 487 35.9
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.3e-64 250.8 462 38.1
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 1.5e-63 248.1 386 38.9
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 4.3e-63 246.5 499 32.9
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 7.3e-63 245.7 473 35.1
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 7.3e-63 245.7 485 35.3
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 9.6e-63 245.4 389 38.3
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 2.1e-62 244.2 391 37.1
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 6.9e-61 239.2 497 33.4
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 9.0e-61 238.8 500 33.0
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 2.6e-60 237.3 488 30.5
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 5.8e-60 236.1 510 35.1
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 7.6e-60 235.7 391 35.3
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 2.2e-59 234.2 462 34.4
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.9e-59 233.8 496 32.3
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 3.8e-59 233.4 500 34.0
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 4.9e-59 233.0 385 38.4
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 6.4e-59 232.6 513 32.0
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 1.9e-58 231.1 512 34.6
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 1.9e-58 231.1 506 32.0
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 4.2e-58 229.9 497 31.4
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.2e-57 228.4 514 34.6
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.2e-57 228.4 502 33.1
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.1e-57 227.6 503 31.4
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 2.7e-57 227.3 390 36.7
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 2.7e-57 227.3 505 32.5
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 3.5e-57 226.9 505 31.3
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 3.5e-57 226.9 506 33.2
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 4.6e-57 226.5 498 32.3
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 4.6e-57 226.5 495 32.3
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 6.0e-57 226.1 416 34.6
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.0e-56 225.3 393 36.4
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 1.0e-56 225.3 505 34.7
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.0e-56 225.3 386 35.5
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.3e-56 224.9 505 34.5
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 1.3e-56 224.9 498 32.1
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.3e-56 224.2 478 31.0
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.9e-56 223.4 417 33.6
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 8.7e-56 222.2 391 34.8
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 3.3e-55 220.3 501 30.3
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 3.3e-55 220.3 502 32.7
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 9.6e-55 218.8 403 33.0
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 9.6e-55 218.8 437 35.5
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.6e-54 218.0 248 47.2
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.4e-53 214.9 388 36.9
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.8e-53 214.5 394 34.3
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.8e-53 214.5 404 34.7
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 1.5e-52 211.5 503 29.6
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 3.4e-52 210.3 444 33.3
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.3e-51 208.4 388 36.3
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 1.7e-51 208.0 469 32.0
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.2e-51 207.6 390 33.8
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.2e-51 207.6 391 35.0
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.9e-51 207.2 391 35.0
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 3.8e-51 206.8 391 36.1
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 4.9e-51 206.5 488 29.7
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 5.4e-50 203.0 473 28.3
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 4.6e-49 199.9 479 29.2
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.0e-48 198.7 411 32.4
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.0e-48 197.2 407 34.4
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 2.5e-47 194.1 512 30.9
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 4.8e-46 189.9 398 32.9
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 6.2e-46 189.5 490 30.2
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 1.4e-45 188.3 494 30.0
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.8e-45 188.0 266 43.2
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 2.6e-44 184.1 402 30.3
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.6e-41 174.9 513 29.4
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.1e-41 174.5 474 30.8
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 2.1e-41 174.5 356 33.7
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.5e-41 173.7 399 33.6
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.3e-38 165.2 484 27.7
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 3.7e-38 163.7 379 30.9
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 2.2e-35 154.5 377 29.7
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 7.1e-34 149.4 286 33.2
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 4.6e-33 146.7 271 36.9
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 4.6e-33 146.7 261 34.9
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 7.9e-33 146.0 280 33.2
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 7.4e-31 139.4 275 32.7
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 3.7e-30 137.1 290 31.7
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 4.8e-30 136.7 290 31.0
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 8.2e-30 136.0 254 37.4
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.4e-29 134.4 250 34.4
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 2.0e-28 131.3 217 37.8
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.4e-28 130.6 245 38.8
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.7e-27 128.3 251 33.5
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 6.1e-25 119.8 245 29.4
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 7.9e-25 119.4 255 35.3
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.4e-21 107.8 238 30.3
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 3.1e-21 107.5 244 33.2
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.0e-19 102.4 238 34.0
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 3.2e-18 97.4 141 41.8
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 5.5e-18 96.7 281 28.5
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 5.5e-18 96.7 471 24.8
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 7.2e-18 96.3 225 27.6
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 6.1e-17 93.2 225 29.3
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 5.7e-15 86.7 244 26.2
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 7.0e-13 79.7 136 37.5
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 7.7e-12 76.3 112 39.3
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 1.0e-11 75.9 175 34.9
Lj7A278T10 Lonicera japonica HOM05D003538 ORTHO05D004376 3.8e-11 73.9 141 34.0
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.7e-09 67.8 266 25.6
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 4.0e-08 63.9 127 36.2
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 1.1e-07 62.4 80 36.2
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.7e-06 58.5 133 37.6


User provided reference genes

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