Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 9.8e-167 590.1 311 100.0
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 7.3e-154 547.4 350 85.1
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.6e-151 538.9 344 83.7
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 1.6e-148 529.6 357 79.8
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 1.9e-146 522.7 344 82.6
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 7.1e-141 504.2 346 80.6
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 2.7e-140 502.3 344 80.8
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 3.0e-139 498.8 345 78.6
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 1.6e-137 493.0 344 78.5
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 4.8e-137 491.5 311 83.3
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 4.8e-137 491.5 346 79.5
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 9.9e-135 483.8 311 82.6
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.4e-133 479.9 336 75.9
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 5.1e-131 471.5 345 75.1
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 8.1e-129 464.2 326 76.1
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 1.8e-128 463.0 309 79.6
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 6.4e-126 454.5 345 71.3
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 8.4e-126 454.1 345 71.9
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 1.4e-125 453.4 345 70.7
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 3.2e-125 452.2 344 70.9
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 3.2e-125 452.2 345 69.0
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 4.2e-125 451.8 296 81.8
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 4.2e-125 451.8 345 69.3
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 9.3e-125 450.7 344 70.3
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 4.6e-124 448.4 344 69.5
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.8e-123 446.4 345 69.6
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 3.9e-123 445.3 345 69.0
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 5.1e-123 444.9 346 70.5
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 5.1e-123 444.9 345 70.1
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 6.7e-123 444.5 347 69.7
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 4.3e-122 441.8 345 68.4
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 5.6e-122 441.4 345 68.4
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 9.6e-122 440.7 344 69.2
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 9.6e-122 440.7 345 69.3
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.3e-121 440.3 345 68.1
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.6e-121 439.9 345 69.6
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.6e-121 439.9 345 69.6
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.1e-121 439.5 345 68.1
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 2.1e-121 439.5 346 69.1
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 2.1e-121 439.5 345 68.4
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 2.8e-121 439.1 344 68.9
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 3.7e-121 438.7 345 67.5
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 4.8e-121 438.3 345 68.4
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 6.2e-121 438.0 345 67.5
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.4e-120 436.8 345 67.0
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.4e-120 436.8 341 67.7
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.4e-120 436.0 346 68.2
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 2.4e-120 436.0 345 68.4
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 5.3e-120 434.9 345 68.4
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 5.3e-120 434.9 345 68.1
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 6.9e-120 434.5 344 68.0
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 6.9e-120 434.5 310 71.6
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.2e-119 433.7 344 66.6
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.2e-119 433.7 344 66.9
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.0e-119 433.0 334 69.8
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 2.6e-119 432.6 344 68.0
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 4.5e-119 431.8 343 66.5
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 5.8e-119 431.4 345 67.0
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 2.9e-118 429.1 343 66.2
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 3.8e-118 428.7 343 66.2
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 1.4e-117 426.8 343 65.3
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 1.4e-117 426.8 272 82.7
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 2.5e-117 426.0 345 65.5
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 5.5e-117 424.9 343 65.0
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 5.5e-117 424.9 348 67.2
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 9.3e-117 424.1 346 66.5
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 1.6e-116 423.3 343 65.0
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.6e-116 423.3 345 69.3
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 2.1e-116 422.9 343 64.7
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 2.7e-116 422.5 343 64.4
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 3.5e-116 422.2 346 66.2
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 6.1e-116 421.4 336 67.6
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 7.9e-116 421.0 343 64.7
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 7.9e-116 421.0 345 67.0
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 7.9e-116 421.0 343 64.7
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 1.8e-115 419.9 344 66.0
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 3.9e-115 418.7 349 66.5
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 6.7e-115 417.9 355 63.1
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 1.1e-114 417.2 343 63.8
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 1.1e-114 417.2 343 63.8
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 1.5e-114 416.8 337 66.8
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 1.5e-114 416.8 343 63.8
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 3.3e-114 415.6 343 63.6
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 3.3e-114 415.6 343 63.6
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 3.3e-114 415.6 343 63.6
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 5.7e-114 414.8 346 67.1
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 9.7e-114 414.1 345 65.5
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.6e-113 413.3 312 73.7
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 4.8e-113 411.8 355 62.3
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 6.3e-113 411.4 344 66.3
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 6.3e-113 411.4 367 62.9
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 2.4e-112 409.5 392 59.9
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 5.3e-112 408.3 345 65.5
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 1.2e-111 407.1 325 67.7
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 1.5e-111 406.8 345 63.8
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 2.6e-111 406.0 343 64.7
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 6.5e-110 401.4 343 64.4
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 8.5e-110 401.0 295 70.8
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.4e-109 400.2 295 70.8
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 3.7e-105 385.6 272 72.8
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 8.2e-105 384.4 278 73.4
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 5.5e-101 371.7 336 62.8
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 2.7e-100 369.4 377 57.3
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 3.6e-100 369.0 289 68.5
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 6.3e-97 358.2 325 60.0
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 4.5e-95 352.1 338 57.1
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 8.0e-92 341.3 246 72.8
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 6.7e-91 338.2 416 49.5
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 7.7e-87 324.7 329 55.6
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 5.2e-83 312.0 311 57.9
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 2.4e-80 303.1 222 67.6
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 5.9e-79 298.5 384 46.9
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 1.6e-76 290.4 343 51.3
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 4.7e-76 288.9 222 66.7
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 1.4e-72 277.3 249 61.0
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 2.1e-68 263.5 249 57.8
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 2.8e-68 263.1 200 67.0
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.0e-67 261.2 204 66.7
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 7.0e-64 248.4 395 45.8
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 2.7e-63 246.5 254 54.3
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 2.3e-62 243.4 152 75.7
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 4.3e-61 239.2 308 44.5
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 5.4e-56 222.2 184 68.5
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 4.3e-53 212.6 287 43.2
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 9.5e-53 211.5 164 69.5
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 2.3e-51 206.8 232 53.0
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 1.4e-48 197.6 154 63.0
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 3.1e-43 179.9 110 80.9
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 6.2e-36 155.6 330 33.6
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 2.6e-34 150.2 134 63.4
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 9.9e-34 148.3 144 54.2
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 4.9e-33 146.0 124 68.5
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 5.4e-32 142.5 106 76.4
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 1.1e-27 128.3 346 30.3
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.2e-26 124.8 131 53.4
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 2.6e-26 123.6 362 29.0
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 1.2e-23 114.8 319 29.8
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.3e-20 104.8 95 63.2
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 6.9e-19 99.0 95 61.1
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 1.4e-16 91.3 95 51.6
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 1.8e-11 74.3 38 89.5
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 2.1e-07 60.8 38 71.1


User provided reference genes

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