Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 0.0e+00 1123.2 836 100.0
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 4.5e-307 1057.7 836 96.5
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.1e-278 963.4 838 90.8
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.6e-272 941.8 837 90.1
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 3.0e-271 938.7 833 89.1
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 3.1e-268 928.7 820 89.4
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.0e-266 923.7 819 88.6
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 9.4e-265 917.1 828 85.4
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 1.4e-263 913.3 828 87.8
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 6.6e-258 894.4 853 81.4
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 1.9e-257 892.9 833 86.7
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 5.9e-251 871.3 827 83.7
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 5.8e-238 828.2 812 80.5
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 4.3e-233 812.0 812 80.2
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 3.6e-232 808.9 846 79.4
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.3e-231 806.2 824 76.6
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 2.6e-230 802.7 826 80.3
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 5.8e-230 801.6 828 78.5
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.3e-229 800.4 830 75.5
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 3.7e-229 798.9 834 75.3
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 8.3e-229 797.7 826 82.6
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 2.4e-228 796.2 790 81.6
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.1e-227 793.1 828 80.0
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 2.3e-226 789.6 834 79.0
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 1.1e-223 780.8 828 79.6
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 4.0e-223 778.9 806 81.1
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.2e-222 777.3 818 80.6
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 4.9e-221 771.9 814 75.7
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 9.3e-220 767.7 814 77.3
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 3.3e-217 759.2 829 69.2
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 4.3e-217 758.8 833 75.3
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 7.3e-217 758.1 817 80.8
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 6.2e-216 755.0 818 80.3
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.1e-215 754.2 818 80.3
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 1.4e-215 753.8 893 71.4
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 3.1e-215 752.7 803 80.0
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 9.0e-215 751.1 831 78.1
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.2e-214 750.7 831 78.1
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.0e-214 750.0 807 78.3
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 2.0e-214 750.0 818 71.6
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 9.9e-214 747.7 834 77.5
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 9.9e-214 747.7 807 77.7
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.3e-213 747.3 818 76.4
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 2.2e-213 746.5 812 79.4
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 3.8e-213 745.7 866 68.1
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 2.4e-212 743.0 822 72.1
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 7.1e-212 741.5 834 78.2
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 7.1e-212 741.5 812 68.2
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.7e-210 736.9 826 75.2
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.1e-209 734.2 842 66.7
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 4.3e-209 732.3 835 76.3
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 4.3e-209 732.3 805 77.0
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.6e-209 731.9 832 68.3
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 1.6e-208 730.3 826 76.0
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 3.1e-207 726.1 843 75.7
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 5.3e-207 725.3 836 77.4
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 2.6e-206 723.0 812 73.0
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 4.5e-206 722.2 819 77.9
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 9.9e-206 721.1 831 76.7
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 6.4e-205 718.4 846 74.7
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 8.4e-205 718.0 837 75.9
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 3.2e-204 716.1 827 78.2
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 7.1e-204 714.9 832 76.0
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.2e-203 714.1 814 75.6
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 1.6e-203 713.8 807 76.2
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.6e-203 713.8 820 70.7
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 2.1e-203 713.4 849 76.7
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.3e-202 710.7 818 72.2
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 8.7e-202 708.0 837 72.4
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 1.5e-201 707.2 792 73.4
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 9.6e-201 704.5 817 75.4
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 1.1e-199 701.0 837 73.8
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 1.1e-199 701.0 832 68.8
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 1.4e-199 700.7 812 74.9
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.4e-199 700.7 819 76.2
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 2.4e-199 699.9 813 77.7
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 3.1e-199 699.5 839 73.8
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 9.0e-199 698.0 818 71.0
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.2e-198 697.6 833 73.7
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 1.2e-198 697.6 832 70.7
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 2.0e-198 696.8 832 68.6
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 1.3e-197 694.1 803 76.0
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 4.2e-196 689.1 832 73.7
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 4.6e-195 685.6 814 75.2
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 5.1e-194 682.2 804 75.4
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 8.7e-194 681.4 819 71.2
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 1.9e-193 680.2 747 78.2
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 9.6e-193 677.9 819 67.0
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 3.7e-192 676.0 817 73.3
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.0e-190 670.2 827 74.4
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 4.5e-190 669.1 792 70.6
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 9.3e-188 661.4 820 67.6
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 9.3e-188 661.4 802 73.9
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 2.7e-187 659.8 832 66.2
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 6.1e-187 658.7 809 64.8
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.8e-186 657.1 822 70.3
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 6.7e-186 655.2 734 75.7
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 3.3e-185 652.9 812 68.1
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 9.7e-185 651.4 806 72.3
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 3.7e-184 649.4 819 72.8
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 8.2e-184 648.3 829 70.4
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 2.4e-183 646.7 819 70.6
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 9.0e-183 644.8 813 72.6
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 5.9e-182 642.1 820 72.4
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 5.0e-181 639.0 809 72.6
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 8.5e-181 638.3 819 72.4
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 8.5e-181 638.3 819 72.4
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 2.5e-180 636.7 813 70.5
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 4.6e-179 632.5 819 71.9
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 4.6e-179 632.5 819 71.9
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 6.1e-179 632.1 791 72.3
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 1.4e-178 630.9 806 72.5
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 8.8e-178 628.2 819 71.1
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 8.8e-178 628.2 819 72.2
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 4.3e-177 625.9 819 71.7
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.3e-173 614.4 834 64.5
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.6e-171 607.4 819 69.5
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 4.7e-171 605.9 792 60.0
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 7.9e-171 605.1 812 68.0
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 2.3e-170 603.6 819 70.2
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 5.7e-169 599.0 805 64.7
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.2e-168 597.0 643 84.0
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 2.2e-168 597.0 820 67.4
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 4.8e-168 595.9 805 64.5
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 4.8e-168 595.9 805 64.5
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 4.5e-166 589.3 839 62.9
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 2.2e-165 587.0 826 63.4
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.1e-164 584.7 766 63.4
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.5e-164 583.6 829 66.1
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 5.9e-158 562.4 835 67.9
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.2e-155 554.7 823 65.2
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 1.6e-155 554.3 806 62.9
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.6e-155 554.3 762 59.3
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.8e-154 550.8 805 62.5
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 3.0e-154 550.1 805 62.6
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 3.0e-154 550.1 689 78.4
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 4.4e-153 546.2 740 65.5
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 7.0e-151 538.9 838 61.0
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.2e-150 538.1 827 63.6
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 3.2e-148 530.0 806 61.8
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.8e-143 514.2 689 67.9
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 7.5e-137 492.3 652 69.6
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 3.2e-135 486.9 785 52.1
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 5.9e-134 482.6 907 53.1
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.6e-129 467.2 923 51.0
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.0e-125 455.3 651 76.0
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.9e-125 453.4 857 48.9
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 5.6e-124 449.5 805 54.3
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.5e-121 441.4 600 66.8
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.1e-119 435.3 848 57.9
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 9.2e-111 405.6 927 47.7
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 8.6e-109 399.1 649 74.9
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 2.9e-104 384.0 962 49.3
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 5.8e-97 359.8 442 71.3
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 7.6e-97 359.4 814 36.7
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 7.6e-97 359.4 746 52.0
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 8.4e-96 355.9 648 59.3
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 6.0e-94 349.7 320 70.9
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 1.3e-91 342.0 431 53.8
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 4.5e-89 333.6 595 63.9
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 2.4e-82 311.2 1301 29.6
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 6.7e-77 293.1 396 52.0
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 3.8e-72 277.3 272 66.2
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 6.7e-69 266.5 188 73.4
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 1.8e-66 258.5 311 79.4
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 3.2e-47 194.5 232 50.4
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.0e-36 158.7 131 59.5
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.5e-33 147.5 118 62.7
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.7e-32 145.6 82 86.6
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.7e-32 145.6 118 64.4
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 6.8e-29 133.7 120 63.3
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 1.0e-24 119.8 88 68.2
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 2.0e-20 105.5 239 80.3
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 2.6e-20 105.1 167 43.7
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 3.3e-15 88.2 193 36.3
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 5.2e-13 80.9 62 62.9
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 1.7e-08 65.9 210 27.1


User provided reference genes

Program Settings