Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 4.1e-53 211.1 103 100.0
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 7.8e-52 206.8 103 97.1
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 2.3e-51 205.3 103 97.1
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 3.1e-48 194.9 101 91.1
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 8.9e-48 193.4 102 90.2
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 1.5e-47 192.6 101 91.1
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 3.4e-47 191.4 103 87.4
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 9.8e-47 189.9 100 92.0
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 9.8e-47 189.9 103 90.3
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 1.7e-46 189.1 103 86.4
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.9e-46 188.3 101 88.1
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 4.9e-46 187.6 101 88.1
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 4.9e-46 187.6 102 86.3
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 6.4e-46 187.2 103 86.4
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 8.3e-46 186.8 103 84.5
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 1.1e-45 186.4 103 85.4
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 1.4e-45 186.0 101 87.1
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 1.4e-45 186.0 101 87.1
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 1.9e-45 185.7 103 85.4
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.9e-45 185.7 103 84.5
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 2.4e-45 185.3 103 84.5
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 2.4e-45 185.3 103 83.5
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 2.4e-45 185.3 103 83.5
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 4.1e-45 184.5 103 85.4
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 4.1e-45 184.5 103 85.4
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 4.1e-45 184.5 103 85.4
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 9.2e-45 183.3 103 84.5
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 1.2e-44 183.0 100 87.0
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 1.2e-44 183.0 103 85.4
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.6e-44 182.6 103 81.6
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 1.6e-44 182.6 103 83.5
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 1.6e-44 182.6 103 84.5
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 2.0e-44 182.2 103 83.5
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 2.7e-44 181.8 99 86.9
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 3.5e-44 181.4 103 81.6
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 3.5e-44 181.4 103 83.5
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 4.6e-44 181.0 103 80.6
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 4.6e-44 181.0 103 81.6
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 7.8e-44 180.3 103 82.5
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 1.7e-43 179.1 103 82.5
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 2.3e-43 178.7 103 81.6
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 2.3e-43 178.7 101 82.2
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 3.0e-43 178.3 112 77.7
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 3.0e-43 178.3 107 82.2
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 3.9e-43 177.9 103 80.6
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 3.9e-43 177.9 102 82.4
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 5.0e-43 177.6 103 81.6
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 5.0e-43 177.6 103 81.6
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 5.0e-43 177.6 103 81.6
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 5.0e-43 177.6 103 79.6
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 6.6e-43 177.2 103 80.6
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 6.6e-43 177.2 101 79.2
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 1.1e-42 176.4 100 81.0
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 1.1e-42 176.4 102 80.4
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 1.5e-42 176.0 103 79.6
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 1.9e-42 175.6 101 82.2
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 1.9e-42 175.6 102 79.4
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 2.5e-42 175.3 103 80.6
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 4.3e-42 174.5 102 79.4
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 7.3e-42 173.7 100 81.0
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 9.5e-42 173.3 103 78.6
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.2e-41 172.9 100 81.0
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.6e-41 172.6 100 80.0
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 2.1e-41 172.2 101 81.2
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 2.1e-41 172.2 102 76.5
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 2.8e-41 171.8 114 73.7
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 6.2e-41 170.6 105 78.1
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 1.4e-40 169.5 99 79.8
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 1.4e-40 169.5 99 79.8
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 1.4e-40 169.5 99 79.8
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 1.4e-40 169.5 99 80.8
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 1.4e-40 169.5 92 87.0
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.4e-40 169.5 100 78.0
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 4.0e-40 167.9 100 76.0
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 4.0e-40 167.9 102 75.5
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 5.2e-40 167.5 101 75.2
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 5.2e-40 167.5 99 76.8
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 5.2e-40 167.5 99 76.8
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 5.2e-40 167.5 99 76.8
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 5.2e-40 167.5 99 76.8
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 5.2e-40 167.5 101 73.3
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 6.8e-40 167.2 100 77.0
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 8.9e-40 166.8 101 75.2
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 8.9e-40 166.8 99 75.8
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 1.2e-39 166.4 94 83.0
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 2.0e-39 165.6 98 77.6
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 2.0e-39 165.6 101 75.2
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 4.4e-39 164.5 100 73.0
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 4.4e-39 164.5 99 75.8
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 9.8e-39 163.3 98 75.5
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 9.8e-39 163.3 101 73.3
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 1.3e-38 162.9 98 75.5
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 1.7e-38 162.5 101 74.3
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 2.2e-38 162.2 98 75.5
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 2.2e-38 162.2 94 78.7
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 5.4e-37 157.5 94 78.7
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 1.3e-35 152.9 101 71.3
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.7e-35 152.5 100 67.0
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 7.3e-34 147.1 92 71.7
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 1.8e-32 142.5 101 63.4
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 4.0e-32 141.4 101 62.4
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 4.4e-31 137.9 82 78.0
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 7.5e-31 137.1 74 87.8
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.7e-30 136.0 74 85.1
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 2.2e-30 135.6 71 87.3
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 3.7e-30 134.8 71 90.1
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 3.7e-30 134.8 74 85.1
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 3.7e-30 134.8 99 52.5
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 8.3e-30 133.7 100 54.0
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 1.1e-29 133.3 71 88.7
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 7.1e-29 130.6 72 83.3
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 7.1e-29 130.6 76 85.5
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 9.2e-29 130.2 72 84.7
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 3.5e-28 128.3 75 77.3
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 2.3e-27 125.6 99 53.5
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 3.9e-27 124.8 71 83.1
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 1.8e-24 115.9 76 64.5
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 4.0e-24 114.8 69 72.5
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 5.4e-21 104.4 105 54.3
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 5.1e-19 97.8 64 73.4
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 1.5e-18 96.3 64 75.0
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 3.5e-12 75.1 54 59.3
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 4.8e-09 64.7 34 88.2
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 1.1e-08 63.5 38 78.9
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 4.0e-08 61.6 43 67.4
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.2e-07 60.1 40 67.5
arahy.Tifrunner.gnm1.ann1.6H1017 Arachis hypogaea HOM05D007008 ORTHO05D008622 3.4e-07 58.5 80 42.5
A10p26800 Brassica napus HOM05D007008 ORTHO05D008622 8.4e-06 53.9 36 69.4


User provided reference genes

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