Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.6e-97 359.4 179 100.0
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.8e-96 355.9 179 98.9
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 9.9e-95 350.1 179 97.2
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 3.7e-94 348.2 179 96.6
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 2.8e-89 332.0 180 91.1
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 3.6e-89 331.6 182 90.7
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 3.6e-89 331.6 179 91.6
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 6.2e-89 330.9 176 92.0
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 6.2e-89 330.9 179 91.1
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.1e-88 330.1 180 90.6
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 3.1e-88 328.6 179 91.1
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 4.9e-86 321.2 180 88.9
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 4.9e-86 321.2 180 88.9
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 4.9e-86 321.2 180 88.9
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.1e-85 320.1 180 88.3
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.9e-85 319.3 180 88.3
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.9e-85 319.3 180 88.3
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 5.4e-85 317.8 180 88.9
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.2e-84 316.6 180 87.8
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 2.1e-84 315.8 183 87.4
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 2.7e-84 315.5 180 87.8
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 3.5e-84 315.1 180 88.3
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 4.6e-84 314.7 180 87.8
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 4.6e-84 314.7 180 86.1
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.7e-83 312.8 180 86.1
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.7e-83 312.8 180 86.1
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 3.0e-83 312.0 180 87.2
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 5.1e-83 311.2 178 88.2
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 6.6e-83 310.8 180 86.1
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 8.7e-83 310.5 180 87.2
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 8.7e-83 310.5 180 85.0
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 1.5e-82 309.7 180 85.0
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.9e-82 309.3 180 85.6
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 4.3e-82 308.1 180 86.1
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 4.3e-82 308.1 180 85.0
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 4.3e-82 308.1 180 87.2
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 9.6e-82 307.0 180 86.7
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.3e-81 306.6 180 86.1
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 1.3e-81 306.6 180 85.6
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 1.6e-81 306.2 180 84.4
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 2.8e-81 305.4 180 85.0
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 3.6e-81 305.1 180 82.8
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 8.1e-81 303.9 180 85.6
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.1e-80 303.5 180 83.9
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.4e-80 303.1 180 83.3
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 1.8e-80 302.8 180 83.3
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 2.4e-80 302.4 180 83.9
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 4.0e-80 301.6 180 81.1
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 6.9e-80 300.8 178 86.0
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 6.9e-80 300.8 169 89.9
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 9.0e-80 300.4 180 82.8
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 2.0e-79 299.3 177 81.4
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 4.4e-79 298.1 177 83.6
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 5.8e-79 297.7 180 80.6
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 7.6e-79 297.4 180 80.6
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 7.6e-79 297.4 180 80.6
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 9.9e-79 297.0 180 83.3
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 3.8e-78 295.0 180 80.6
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 3.8e-78 295.0 178 82.6
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 8.4e-78 293.9 168 88.1
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.1e-77 293.5 177 83.6
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 1.4e-77 293.1 176 82.4
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 1.9e-77 292.7 177 82.5
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 1.9e-77 292.7 177 82.5
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 1.9e-77 292.7 177 82.5
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 3.2e-77 292.0 178 81.5
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.2e-77 292.0 171 86.0
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 3.2e-77 292.0 177 83.1
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.2e-77 292.0 177 83.1
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 5.4e-77 291.2 180 79.4
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 5.4e-77 291.2 178 81.5
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 7.1e-77 290.8 176 80.7
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 9.3e-77 290.4 202 75.2
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 1.2e-76 290.0 177 81.9
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 1.2e-76 290.0 178 82.6
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 1.6e-76 289.7 177 80.2
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 1.6e-76 289.7 177 81.4
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 1.6e-76 289.7 177 81.9
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 2.1e-76 289.3 177 82.5
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 3.5e-76 288.5 177 80.8
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.5e-76 288.5 169 84.6
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 4.6e-76 288.1 177 81.4
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 6.0e-76 287.7 201 75.6
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 6.0e-76 287.7 178 79.8
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 7.8e-76 287.3 169 84.0
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 1.0e-75 287.0 177 81.9
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 1.0e-75 287.0 177 81.9
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.0e-75 287.0 180 81.1
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 2.3e-75 285.8 178 81.5
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 3.0e-75 285.4 180 76.1
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 3.9e-75 285.0 180 78.3
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.9e-75 285.0 180 79.4
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.9e-75 285.0 180 79.4
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 5.1e-75 284.6 170 80.6
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.1e-74 283.5 178 80.9
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 1.1e-74 283.5 178 80.9
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.1e-74 283.5 178 80.9
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.5e-74 283.1 178 80.9
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 1.9e-74 282.7 180 78.9
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 2.5e-74 282.3 170 80.0
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 2.5e-74 282.3 183 77.0
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 2.5e-74 282.3 183 77.0
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 5.6e-74 281.2 170 81.8
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 5.6e-74 281.2 171 80.7
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.3e-73 280.0 178 80.3
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.8e-73 278.9 169 82.2
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 2.8e-73 278.9 180 77.2
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.8e-73 278.9 169 83.4
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 3.6e-73 278.5 166 82.5
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 3.1e-72 275.4 169 82.8
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.1e-72 275.4 170 81.2
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 9.0e-72 273.9 173 79.2
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 1.5e-71 273.1 178 78.7
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 5.8e-71 271.2 180 76.7
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.6e-71 270.8 158 85.4
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 9.9e-71 270.4 169 79.3
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 1.3e-70 270.0 170 80.6
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 2.2e-70 269.2 176 76.1
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 4.9e-70 268.1 177 76.3
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 4.9e-70 268.1 169 78.1
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 3.2e-69 265.4 176 75.6
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.2e-68 263.5 177 74.0
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 6.0e-68 261.2 169 78.1
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 6.0e-68 261.2 259 58.3
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 2.5e-66 255.8 151 86.1
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 7.4e-66 254.2 169 69.8
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 9.6e-66 253.8 181 69.6
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 9.6e-66 253.8 178 69.1
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 8.4e-62 240.7 166 68.1
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 1.9e-61 239.6 149 81.2
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 4.6e-60 235.0 182 63.7
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 3.9e-59 231.9 181 63.0
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 3.3e-58 228.8 180 69.4
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 6.9e-56 221.1 172 63.4
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 8.2e-49 197.6 168 57.1
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 2.6e-47 192.6 134 72.4
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 1.1e-42 177.2 172 57.0
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 1.2e-39 167.2 101 87.1
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.0e-34 149.8 103 76.7
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 2.0e-34 149.8 117 65.8
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 9.1e-32 141.0 80 85.0
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.7e-30 136.7 166 40.4
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.2e-28 130.6 178 41.6
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 2.7e-28 129.4 75 85.3
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 2.7e-28 129.4 75 85.3
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.8e-25 119.4 67 82.1
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 2.0e-23 113.2 206 39.8
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.2e-22 109.8 57 87.7
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 2.9e-22 109.4 100 58.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.0e-19 100.9 54 88.9
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 2.8e-17 92.8 145 38.6
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 3.7e-17 92.4 83 61.4
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 4.8e-17 92.0 63 74.6
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 2.7e-15 86.3 155 34.8
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 1.1e-13 80.9 89 50.6
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.4e-11 73.9 37 94.6
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 3.0e-11 72.8 87 50.6
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 3.4e-10 69.3 45 71.1
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 5.7e-10 68.6 51 66.7
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 2.8e-09 66.2 38 86.8
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 3.7e-09 65.9 55 61.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 1.1e-08 64.3 50 68.0
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 3.5e-07 59.3 42 66.7
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 4.5e-07 58.9 42 69.0


User provided reference genes

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