Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 1.0e-266 923.3 644 100.0
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 1.0e-218 763.8 595 91.1
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 1.3e-160 570.9 631 75.8
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 2.8e-155 553.1 636 67.9
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 1.1e-98 365.2 603 59.2
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 1.7e-96 357.8 617 63.4
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 5.1e-85 319.7 619 51.9
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 9.7e-84 315.5 526 57.2
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 6.9e-82 309.3 515 58.1
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 1.8e-66 258.1 610 38.4
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 1.6e-65 255.0 614 56.4
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 2.6e-65 254.2 638 44.7
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 1.7e-64 251.5 591 43.3
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 2.5e-63 247.7 620 53.2
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 4.1e-58 230.3 577 44.7
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 4.1e-58 230.3 610 45.7
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 1.7e-56 224.9 620 51.9
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 4.7e-54 216.9 626 47.3
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 8.3e-51 206.1 612 52.1
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 9.1e-50 202.6 612 51.8
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 1.3e-48 198.7 612 50.5
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 1.7e-48 198.4 623 49.9
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 1.9e-47 194.9 638 47.0
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 1.9e-47 194.9 615 47.3
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 4.2e-47 193.7 615 47.2
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 5.5e-47 193.4 614 49.5
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 3.6e-46 190.7 427 52.7
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 4.7e-46 190.3 614 52.8
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 1.8e-45 188.3 416 51.7
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 4.4e-44 183.7 608 51.5
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 8.3e-43 179.5 610 38.9
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 4.1e-42 177.2 563 52.4
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 7.0e-42 176.4 612 48.2
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 1.2e-41 175.6 394 54.8
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 5.9e-41 173.3 394 54.1
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 5.9e-41 173.3 610 48.4
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 6.6e-40 169.9 615 47.3
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 1.1e-39 169.1 610 50.2
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 1.9e-39 168.3 396 51.8
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 5.6e-39 166.8 601 48.1
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 5.6e-39 166.8 559 46.0
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 1.2e-38 165.6 402 53.7
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 6.1e-38 163.3 564 42.6
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 1.8e-37 161.8 478 53.3
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 4.0e-37 160.6 548 43.6
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 5.2e-37 160.2 478 51.5
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 3.4e-36 157.5 396 56.8
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 9.8e-36 156.0 396 50.8
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 2.9e-35 154.5 612 49.3
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 4.9e-35 153.7 396 56.1
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 1.4e-34 152.1 614 49.3
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 1.7e-32 145.2 416 52.2
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 1.1e-31 142.5 576 48.4
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 2.5e-31 141.4 396 53.5
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 7.3e-31 139.8 383 54.6
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 1.2e-30 139.0 627 38.6
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 2.8e-30 137.9 532 28.2
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 1.1e-29 136.0 396 53.8
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 1.4e-29 135.6 265 32.8
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 2.3e-29 134.8 382 53.7
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 8.9e-29 132.9 380 55.5
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 4.4e-28 130.6 579 44.9
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 7.5e-28 129.8 119 57.1
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 9.8e-28 129.4 391 52.9
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 1.1e-26 125.9 554 40.1
TPR.G20566 Trifolium pratense HOM05D007552 ORTHO05D009397 1.4e-26 125.6 532 44.2
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 7.1e-26 123.2 523 44.2
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 1.2e-25 122.5 176 41.5
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 6.6e-24 116.7 394 43.4
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 8.6e-24 116.3 152 42.8
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 1.5e-23 115.5 200 39.5
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 3.6e-22 110.9 176 38.6
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 5.2e-21 107.1 538 30.3
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 1.2e-20 105.9 293 45.4
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 2.0e-20 105.1 550 38.9
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 5.8e-20 103.6 519 23.5
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 4.9e-19 100.5 186 36.6
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 8.4e-19 99.8 525 25.0
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 1.1e-18 99.4 519 26.6
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 1.1e-18 99.4 519 26.6
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 1.2e-17 95.9 523 42.4
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 1.3e-16 92.4 184 32.6
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 2.3e-16 91.7 208 29.8
Medtr4g007150 Medicago truncatula HOM05D067157 ORTHO05D009397 3.0e-16 91.3 109 47.7
MD17G1163000 Malus domestica HOM05D007552 ORTHO05D009397 5.1e-16 90.5 236 45.8
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 8.6e-16 89.7 392 45.9
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 4.3e-15 87.4 518 20.7
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 4.3e-15 87.4 518 20.7
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 7.3e-15 86.7 525 35.2
Lj6C66G1 Lonicera japonica HOM05D007552 ORTHO05D009397 6.2e-14 83.6 235 47.2
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 6.8e-13 80.1 525 35.2
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 7.6e-12 76.6 114 37.7
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 4.9e-11 73.9 176 55.7
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 3.2e-10 71.2 59 50.8
SEGI_35089 Sequoiadendron giganteum HOM05D007552 ORTHO05D009397 1.1e-07 62.8 86 34.9
Psat2g151800 Pisum sativum HOM05D000001 ORTHO05D000003 2.8e-06 58.2 121 30.6
Ciclev10011308m.g Citrus clementina HOM05D000001 ORTHO05D009236 6.2e-06 57.0 67 43.3


User provided reference genes

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