Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G219802 Glycine max HOM05D002969 ORTHO05D003308 2.2e-73 278.9 140 100.0
Glyma.19G019300 Glycine max HOM05D002969 ORTHO05D003308 1.6e-71 272.7 139 97.8
Glyma.02G000100 Glycine max HOM05D002969 ORTHO05D003308 7.8e-71 270.4 139 97.8
Glyma.19G263900 Glycine max HOM05D002969 ORTHO05D003308 2.3e-70 268.9 139 97.1
Phvul.007G234600 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 8.6e-62 240.4 139 85.6
TPR.G25535 Trifolium pratense HOM05D002969 ORTHO05D003308 4.1e-56 221.5 140 80.0
Lj3g0017600 Lotus japonicus HOM05D002969 ORTHO05D003308 1.0e-54 216.9 138 80.4
Glyma.16G219900 Glycine max HOM05D002969 ORTHO05D003308 3.9e-54 214.9 129 84.5
Lalb_Chr10g0094641 Lupinus albus HOM05D002969 ORTHO05D003308 5.1e-54 214.5 138 78.3
Psat1g003120 Pisum sativum HOM05D002969 ORTHO05D003308 8.6e-54 213.8 139 77.7
Ca_13957_v3 Cicer arietinum L. HOM05D002969 ORTHO05D003308 4.7e-52 208.0 140 77.1
TPR.G14707 Trifolium pratense HOM05D002969 ORTHO05D003308 8.1e-52 207.2 140 75.0
Medtr3g005240 Medicago truncatula HOM05D002969 ORTHO05D003308 5.8e-50 201.1 138 74.6
arahy.Tifrunner.gnm1.ann1.8DY1VB Arachis hypogaea HOM05D002969 ORTHO05D003308 3.5e-47 191.8 139 71.9
arahy.Tifrunner.gnm1.ann1.MA4BJF Arachis hypogaea HOM05D002969 ORTHO05D003308 3.5e-47 191.8 139 71.9
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 3.0e-46 188.7 137 67.9
CiPaw.01G219300 Carya illinoinensis HOM05D002969 ORTHO05D003308 5.1e-46 188.0 137 68.6
Haze_16025 Corylus avellana HOM05D002969 ORTHO05D003308 8.6e-46 187.2 136 69.1
QL05p007828 Quercus lobata HOM05D002969 ORTHO05D003308 8.6e-46 187.2 139 69.8
Prupe.3G042500 Prunus persica HOM05D002969 ORTHO05D003308 1.5e-45 186.4 139 66.9
GSVIVG01016771001 Vitis vinifera HOM05D002969 ORTHO05D003308 9.6e-45 183.7 137 66.4
RcHm_v2.0_Chr2g0145161 Rosa chinensis HOM05D002969 ORTHO05D003308 3.6e-44 181.8 137 65.7
Thecc.06G119100 Theobroma cacao HOM05D002969 ORTHO05D003308 1.1e-43 180.3 139 65.5
Gorai.012G011500 Gossypium raimondii HOM05D002969 ORTHO05D003308 2.4e-43 179.1 139 65.5
MD09G1184300 Malus domestica HOM05D002969 ORTHO05D003308 2.4e-43 179.1 139 65.5
Ciclev10024687m.g Citrus clementina HOM05D002969 ORTHO05D003308 3.1e-43 178.7 137 68.6
Gohir.D04G009700 Gossypium hirsutum HOM05D002969 ORTHO05D003308 5.2e-43 177.9 139 64.7
Gohir.A05G405950 Gossypium hirsutum HOM05D002969 ORTHO05D003308 8.9e-43 177.2 139 64.7
COL.COLO4_30764 Corchorus olitorius HOM05D002969 ORTHO05D003308 2.0e-42 176.0 139 64.0
Duzib235G1299 Durio zibethinus HOM05D002969 ORTHO05D003308 2.0e-42 176.0 139 64.0
Oeu007563.1 Olea europaea HOM05D002969 ORTHO05D003308 2.0e-42 176.0 139 63.3
Dinv30673 Davidia involucrata HOM05D002969 ORTHO05D003308 4.4e-42 174.9 137 67.2
Dinv34333 Davidia involucrata HOM05D002969 ORTHO05D003308 4.4e-42 174.9 137 67.2
FvH4_6g34630 Fragaria vesca HOM05D002969 ORTHO05D003308 1.3e-41 173.3 137 63.5
FAN09G2022 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.3e-41 173.3 137 63.5
FAN14G5519 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.3e-41 173.3 137 63.5
Nn7g36584 Nelumbo nucifera HOM05D002969 ORTHO05D003308 1.3e-41 173.3 137 63.5
vmacro15026 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 2.2e-41 172.6 137 62.8
Actinidia32183 Actinidia chinensis HOM05D002969 ORTHO05D003308 3.8e-41 171.8 137 64.2
COL.COLO4_27975 Corchorus olitorius HOM05D002969 ORTHO05D003308 8.4e-41 170.6 139 62.6
Lj7C292T8 Lonicera japonica HOM05D002969 ORTHO05D003308 1.4e-40 169.9 137 63.5
MSTRG.10956 Avicennia marina HOM05D002969 ORTHO05D003308 2.4e-40 169.1 134 62.7
FAN05G1938 Fragaria x ananassa HOM05D002969 ORTHO05D003308 3.2e-40 168.7 137 62.0
Sed0027017 Sechium edule HOM05D002969 ORTHO05D003308 3.2e-40 168.7 137 65.0
CANSAT54G2721 Cannabis sativa HOM05D002969 ORTHO05D003308 5.4e-40 167.9 137 64.2
Manes.11G021000 Manihot esculenta HOM05D002969 ORTHO05D003308 5.4e-40 167.9 139 60.4
Sabra03G0037600 Salix brachista HOM05D002969 ORTHO05D003308 2.1e-39 166.0 139 61.2
ClCG05G007230 Citrullus lanatus HOM05D002969 ORTHO05D003308 4.6e-39 164.9 137 62.0
Rhsim08G0238100 Rhododendron simsii HOM05D002969 ORTHO05D003308 7.8e-39 164.1 145 58.6
TAR626G1632 Trochodendron aralioides HOM05D002969 ORTHO05D003308 7.8e-39 164.1 137 62.8
CSS0043728 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 1.3e-38 163.3 129 64.3
Potri.003G064000 Populus trichocarpa HOM05D002969 ORTHO05D003308 1.3e-38 163.3 139 60.4
Atru.chr1.3951 Acer truncatum HOM05D002969 ORTHO05D003308 5.1e-38 161.4 138 62.3
Cc02_g14940 Coffea canephora HOM05D002969 ORTHO05D003308 5.1e-38 161.4 137 59.9
CsaV3_3G015990 Cucumis sativus L. HOM05D002969 ORTHO05D003308 8.7e-38 160.6 137 65.0
vmacro15029 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 1.9e-37 159.5 135 59.3
Nitab4.5_0000794g0160 Nicotiana tabacum HOM05D002969 ORTHO05D003308 3.3e-37 158.7 134 60.4
CAN.G397.51 Capsicum annuum HOM05D002969 ORTHO05D003308 4.3e-37 158.3 134 58.2
Aqoxy7G01394 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 5.6e-37 157.9 137 60.6
Migut.I01069 Erythranthe guttata HOM05D002969 ORTHO05D003308 5.6e-37 157.9 139 55.4
Peaxi162Scf00068g02519 Petunia axillaris HOM05D002969 ORTHO05D003308 7.3e-37 157.5 134 59.7
Prupe.8G262800 Prunus persica HOM05D002969 ORTHO05D003308 7.3e-37 157.5 139 56.8
Aa31LG7G2260 Aethionema arabicum HOM05D002969 ORTHO05D003308 1.6e-36 156.4 137 58.4
TWI31G0668 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 2.1e-36 156.0 136 62.5
PSO210G1276 Papaver somniferum HOM05D002969 ORTHO05D003308 4.8e-36 154.8 137 59.9
PSO447G0254 Papaver somniferum HOM05D002969 ORTHO05D003308 4.8e-36 154.8 137 59.9
Solyc09g009800.3 Solanum lycopersicum HOM05D002969 ORTHO05D003308 1.4e-35 153.3 134 57.5
Sopen09g004560 Solanum pennellii HOM05D002969 ORTHO05D003308 1.4e-35 153.3 134 57.5
SGA_v2.0_scaffold71G23857 Striga asiatica HOM05D002969 ORTHO05D003308 1.8e-35 152.9 134 56.0
Thhalv10017997m.g Eutrema salsugineum HOM05D002969 ORTHO05D003308 5.3e-35 151.4 137 58.4
Atru.chr4.3098 Acer truncatum HOM05D002969 ORTHO05D003308 1.2e-34 150.2 136 61.0
AUR62010285 Chenopodium quinoa HOM05D002969 ORTHO05D003308 1.5e-34 149.8 137 58.4
AL2G17610 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 2.6e-34 149.1 137 56.9
C07p10660 Brassica napus HOM05D002969 ORTHO05D003308 4.5e-34 148.3 137 57.7
BcaC06g35804 Brassica carinata HOM05D002969 ORTHO05D003308 5.8e-34 147.9 137 56.9
A07p07070 Brassica napus HOM05D002969 ORTHO05D003308 5.8e-34 147.9 137 56.9
BolC7t41532H Brassica oleracea HOM05D002969 ORTHO05D003308 5.8e-34 147.9 137 56.9
BraA07t28494Z Brassica rapa HOM05D002969 ORTHO05D003308 5.8e-34 147.9 137 56.9
Carub.0001s1721 Capsella rubella HOM05D002969 ORTHO05D003308 5.8e-34 147.9 137 57.7
AUR62039104 Chenopodium quinoa HOM05D002969 ORTHO05D003308 5.8e-34 147.9 137 57.7
Peaxi162Scf00006g00210 Petunia axillaris HOM05D002969 ORTHO05D003308 5.8e-34 147.9 134 55.2
Sp3g22890 Schrenkiella parvula HOM05D002969 ORTHO05D003308 5.8e-34 147.9 137 56.9
unitig_26.g8927 Utricularia gibba HOM05D002969 ORTHO05D003308 5.8e-34 147.9 134 53.7
AL1G29730 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 9.9e-34 147.1 137 56.9
BcaB06g26734 Brassica carinata HOM05D002969 ORTHO05D003308 9.9e-34 147.1 137 56.2
Cpa.g.sc34.72 Carica papaya HOM05D002969 ORTHO05D003308 9.9e-34 147.1 129 58.9
THA.LOC104813957 Tarenaya hassleriana HOM05D002969 ORTHO05D003308 9.9e-34 147.1 137 57.7
AT1G58766 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 1.3e-33 146.7 139 53.2
AT1G59077 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 1.3e-33 146.7 139 53.2
AT1G59453 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 1.3e-33 146.7 139 53.2
AT1G17450 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 1.7e-33 146.4 137 56.2
EL10Ac9g22289 Beta vulgaris HOM05D002969 ORTHO05D003308 6.4e-33 144.4 137 56.9
Carub.0002s0593 Capsella rubella HOM05D002969 ORTHO05D003308 6.4e-33 144.4 137 55.5
Eucgr.J02821 Eucalyptus grandis HOM05D002969 ORTHO05D003308 6.4e-33 144.4 137 54.0
SalBow6G7155 Salvia bowleyana HOM05D002969 ORTHO05D003308 6.4e-33 144.4 134 56.0
CARHR018040 Cardamine hirsuta HOM05D002969 ORTHO05D003308 8.4e-33 144.1 137 56.2
Lj5C38T4 Lonicera japonica HOM05D002969 ORTHO05D003308 1.9e-32 142.9 125 59.2
PSO017G1981 Papaver somniferum HOM05D002969 ORTHO05D003308 1.9e-32 142.9 137 56.9
PGR102G0955 Punica granatum HOM05D002969 ORTHO05D003308 1.9e-32 142.9 138 52.2
CAN.G947.7 Capsicum annuum HOM05D002969 ORTHO05D000105 3.2e-32 142.1 136 55.1
MD11G1308600 Malus domestica HOM05D002969 ORTHO05D003308 3.2e-32 142.1 139 53.2
DCAR_016128 Daucus carota HOM05D002969 ORTHO05D003308 7.1e-32 141.0 137 55.5
Lsat_1_v5_gn_5_75740 Lactuca sativa HOM05D002969 ORTHO05D003308 1.2e-31 140.2 138 53.6
Ah.01g009920 Amaranthus hybridus HOM05D002969 ORTHO05D003308 1.6e-31 139.8 137 54.7
Sc18g0005650 Simmondsia chinensis HOM05D002969 ORTHO05D003308 2.1e-31 139.4 134 54.5
Ah.01g009880 Amaranthus hybridus HOM05D002969 ORTHO05D003308 2.7e-31 139.0 136 55.1
Ah.01g018170 Amaranthus hybridus HOM05D002969 ORTHO05D003308 7.9e-31 137.5 137 53.3
DCAR_022697 Daucus carota HOM05D002969 ORTHO05D003308 7.9e-31 137.5 137 51.8
FAN24G1542 Fragaria x ananassa HOM05D002969 ORTHO05D003308 3.0e-30 135.6 138 53.6
Lsat_1_v5_gn_1_38040 Lactuca sativa HOM05D002969 ORTHO05D003308 3.0e-30 135.6 135 51.9
MBI06_g12843_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 3.0e-30 135.6 134 53.7
RcHm_v2.0_Chr6g0291551 Rosa chinensis HOM05D002969 ORTHO05D003308 5.1e-30 134.8 136 54.4
FvH4_2g23920 Fragaria vesca HOM05D002969 ORTHO05D003308 4.8e-28 128.3 121 57.0
SEGI_12678 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 2.4e-27 125.9 139 46.0
ATR0618G078 Amborella trichopoda HOM05D002969 ORTHO05D003308 3.1e-27 125.6 134 50.0
ECA247G3059 Erigeron canadensis HOM05D002969 ORTHO05D003308 6.9e-27 124.4 137 48.2
CDE02G2049 Ceratophyllum demersum HOM05D002969 ORTHO05D003308 5.8e-26 121.3 137 49.6
ECA240G4395 Erigeron canadensis HOM05D002969 ORTHO05D003308 9.9e-26 120.6 137 46.7
Peaxi162Scf00559g00315 Petunia axillaris HOM05D002969 ORTHO05D003308 1.3e-25 120.2 125 51.2
Zm00001eb247940 Zea mays HOM05D002969 ORTHO05D003308 2.4e-24 115.9 151 45.0
Zm00001eb254800 Zea mays HOM05D002969 ORTHO05D003308 2.4e-24 115.9 151 45.0
HanXRQChr10g0301861 Helianthus annuus HOM05D002969 ORTHO05D003308 6.0e-23 111.3 137 43.8
Phvul.011G011400 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 2.3e-22 109.4 60 83.3
Haze_15990 Corylus avellana HOM05D002969 ORTHO05D003308 3.9e-22 108.6 108 57.4
Cfa003558 Carpinus fangiana HOM05D002969 ORTHO05D003308 1.5e-21 106.7 108 57.4
Psat0s1819g0040 Pisum sativum HOM05D002969 ORTHO05D003308 5.6e-21 104.8 107 58.9
Psat5g267240 Pisum sativum HOM05D002969 ORTHO05D003308 5.6e-21 104.8 107 58.9
TWI31G0627 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 5.6e-21 104.8 116 50.9
Duzib192G0334 Durio zibethinus HOM05D002969 ORTHO05D003308 1.3e-20 103.6 121 50.4
Os02g0633100 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 1.3e-20 103.6 152 42.1
Nitab4.5_0010825g0010 Nicotiana tabacum HOM05D002969 ORTHO05D003308 1.6e-20 103.2 123 46.3
COL.COLO4_30697 Corchorus olitorius HOM05D002969 ORTHO05D003308 2.8e-20 102.4 117 51.3
FAN15G1247 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.4e-19 99.4 138 44.2
Gohir.A01G106450 Gossypium hirsutum HOM05D002969 ORTHO05D003308 6.9e-19 97.8 120 49.2
Zm00001eb254720 Zea mays HOM05D002969 ORTHO05D003308 5.8e-18 94.7 133 44.4
Gorai.010G233800 Gossypium raimondii HOM05D002969 ORTHO05D003308 1.3e-17 93.6 121 43.0
Gohir.D06G200300 Gossypium hirsutum HOM05D002969 ORTHO05D003308 6.5e-17 91.3 121 42.1
AagrBONN_evm.TU.Sc2ySwM_344.4533 Anthoceros agrestis HOM05D002969 ORTHO05D003308 8.4e-17 90.9 137 35.8
Pp3c4_16500 Physcomitrium patens HOM05D002969 ORTHO05D003308 7.1e-16 87.8 143 37.1
SMO119G0293 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 3.5e-15 85.5 145 34.5
Gohir.A06G192400 Gossypium hirsutum HOM05D002969 ORTHO05D003308 1.0e-14 84.0 78 53.8
Mapoly0002s0195 Marchantia polymorpha HOM05D002969 ORTHO05D003308 1.1e-13 80.5 137 33.6
SMO196G0130 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 4.8e-12 75.1 145 31.0
Rhsim08G0220000 Rhododendron simsii HOM05D002969 ORTHO05D003308 6.3e-12 74.7 64 62.5
Thecc.06G115400 Theobroma cacao HOM05D002969 ORTHO05D003308 4.5e-10 68.6 60 53.3
MBI06_g44919_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 5.0e-09 65.1 100 42.0
HPP92_011314 Vanilla planifolia HOM05D002969 ORTHO05D003308 1.2e-07 60.5 90 44.4
FAN27G1917 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.1e-07 59.7 64 59.4
Gorai.002G118300 Gossypium raimondii HOM05D002969 ORTHO05D003308 2.3e-06 56.2 69 49.3
Rhsim08G0238600 Rhododendron simsii HOM05D042098 ORTHO05D003308 2.3e-06 56.2 91 40.7


User provided reference genes

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