Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 7.3e-83 310.5 151 100.0
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 1.6e-66 256.1 157 86.6
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 8.4e-55 217.2 142 78.9
Phvul.001G047400 Phaseolus vulgaris HOM05D013068 ORTHO05D003125 3.2e-54 215.3 142 78.2
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 1.3e-39 166.8 142 63.4
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 6.1e-37 157.9 163 56.4
Medtr1g012950 Medicago truncatula HOM05D013068 ORTHO05D003125 8.2e-34 147.5 166 57.2
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 5.3e-33 144.8 164 56.7
Lalb_Chr24g0402081 Lupinus albus HOM05D013068 ORTHO05D003125 3.1e-25 119.0 136 52.9
arahy.Tifrunner.gnm1.ann1.NDRC00 Arachis hypogaea HOM05D013068 ORTHO05D003125 4.1e-25 118.6 182 46.7
arahy.Tifrunner.gnm1.ann1.75VKL2 Arachis hypogaea HOM05D013068 ORTHO05D003125 9.1e-25 117.5 179 45.8
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 4.5e-16 88.6 134 50.7
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 7.5e-11 71.2 126 46.0
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 2.2e-10 69.7 142 40.1
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 2.2e-10 69.7 140 38.6
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 8.2e-10 67.8 142 38.0
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 1.1e-09 67.4 126 43.7
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 1.1e-09 67.4 83 49.4
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 1.4e-09 67.0 141 41.1
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.4e-09 67.0 147 40.1
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.4e-09 67.0 147 40.1
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 1.8e-09 66.6 134 38.1
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.4e-09 66.2 60 58.3
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 3.1e-09 65.9 143 36.4
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 3.1e-09 65.9 84 48.8
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 4.1e-09 65.5 147 36.7
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 4.1e-09 65.5 131 40.5
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 5.3e-09 65.1 142 39.4
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 5.3e-09 65.1 137 37.2
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 5.3e-09 65.1 84 47.6
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 7.0e-09 64.7 127 36.2
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 9.1e-09 64.3 144 38.2
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 9.1e-09 64.3 130 37.7
arahy.Tifrunner.gnm1.ann1.H8K6JA Arachis hypogaea HOM05D013068 ORTHO05D003125 1.2e-08 63.9 116 44.8
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.6e-08 63.5 133 35.3
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 1.6e-08 63.5 131 40.5
Sed0014973 Sechium edule HOM05D003969 ORTHO05D003125 1.6e-08 63.5 64 54.7
arahy.Tifrunner.gnm1.ann1.8XJ8NX Arachis hypogaea HOM05D013068 ORTHO05D003125 2.7e-08 62.8 40 82.5
Gohir.D05G012200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.5e-08 62.4 144 36.1
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 3.5e-08 62.4 140 37.9
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 4.5e-08 62.0 116 41.4
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 5.9e-08 61.6 136 38.2
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 5.9e-08 61.6 137 40.1
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 7.7e-08 61.2 150 37.3
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 7.7e-08 61.2 69 55.1
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 7.7e-08 61.2 142 35.9
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 7.7e-08 61.2 90 44.4
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 7.7e-08 61.2 132 40.2
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.0e-07 60.8 81 48.1
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 1.0e-07 60.8 56 57.1
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 1.0e-07 60.8 148 37.2
TWI34G0986 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.0e-07 60.8 121 38.0
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.3e-07 60.5 130 35.4
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 1.3e-07 60.5 134 39.6
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.3e-07 60.5 139 36.0
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 1.7e-07 60.1 130 37.7
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 1.7e-07 60.1 137 36.5
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.2e-07 59.7 81 46.9
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 2.9e-07 59.3 143 37.1
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 2.9e-07 59.3 136 36.0
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.9e-07 59.3 78 47.4
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.9e-07 59.3 129 38.0
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 2.9e-07 59.3 127 37.8
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.8e-07 58.9 142 38.7
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 3.8e-07 58.9 142 38.7
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 3.8e-07 58.9 124 35.5
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 3.8e-07 58.9 139 37.4
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 5.0e-07 58.5 137 35.0
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 5.0e-07 58.5 130 37.7
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 5.0e-07 58.5 131 36.6
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 5.0e-07 58.5 82 47.6
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 5.0e-07 58.5 133 37.6
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 5.0e-07 58.5 99 42.4
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 5.0e-07 58.5 146 34.2
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 6.5e-07 58.2 149 37.6
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 6.5e-07 58.2 150 35.3
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.5e-07 58.2 123 35.8
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 6.5e-07 58.2 123 35.8
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 6.5e-07 58.2 131 38.9
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 6.5e-07 58.2 131 34.4
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 6.5e-07 58.2 58 56.9
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 6.5e-07 58.2 151 35.1
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 6.5e-07 58.2 141 31.9
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 8.5e-07 57.8 145 33.1
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 8.5e-07 57.8 133 35.3
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 1.1e-06 57.4 55 60.0
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.1e-06 57.4 81 44.4
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.1e-06 57.4 142 38.0
Gorai.009G012500 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.1e-06 57.4 144 34.7
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.1e-06 57.4 79 40.5
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 1.5e-06 57.0 119 37.8
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.5e-06 57.0 83 45.8
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.5e-06 57.0 85 44.7
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.5e-06 57.0 134 36.6
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.5e-06 57.0 140 37.9
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 2.5e-06 56.2 136 34.6
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.5e-06 56.2 70 51.4
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.5e-06 56.2 84 46.4
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 3.2e-06 55.8 68 44.1
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 3.2e-06 55.8 143 34.3
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 3.2e-06 55.8 143 34.3
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.2e-06 55.8 63 54.0
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 3.2e-06 55.8 134 32.8
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 4.2e-06 55.5 42 66.7
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 4.2e-06 55.5 159 34.6
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 4.2e-06 55.5 169 30.8
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 5.5e-06 55.1 65 55.4
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 5.5e-06 55.1 108 39.8
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 5.5e-06 55.1 94 39.4
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 7.2e-06 54.7 43 65.1
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 7.2e-06 54.7 66 56.1
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 7.2e-06 54.7 134 34.3
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 7.2e-06 54.7 132 32.6
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 7.2e-06 54.7 52 53.8
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 7.2e-06 54.7 134 36.6
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 7.2e-06 54.7 131 34.4
SGA_v2.0_scaffold64G21997 Striga asiatica HOM05D003969 ORTHO05D003125 9.4e-06 54.3 142 35.2


User provided reference genes

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