Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 2.2e-44 181.8 86 100.0
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 8.8e-41 169.9 83 97.6
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 1.3e-39 166.0 83 97.6
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 3.7e-39 164.5 83 96.4
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 4.8e-39 164.1 83 96.4
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 4.8e-39 164.1 83 96.4
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.1e-38 162.9 83 96.4
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.1e-38 162.9 83 96.4
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 4.1e-38 161.0 83 95.2
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 1.2e-37 159.5 83 94.0
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 1.0e-36 156.4 83 92.8
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 1.3e-36 156.0 83 92.8
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 2.2e-36 155.2 82 92.7
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 6.5e-36 153.7 83 90.4
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 8.5e-36 153.3 82 89.0
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 1.4e-35 152.5 82 87.8
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 2.5e-35 151.8 82 85.4
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 2.5e-35 151.8 82 89.0
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 3.2e-35 151.4 82 86.6
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 3.2e-35 151.4 82 86.6
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 4.2e-35 151.0 83 90.4
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 7.2e-35 150.2 82 87.8
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 9.4e-35 149.8 82 84.1
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 9.4e-35 149.8 82 84.1
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 9.4e-35 149.8 82 85.4
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 1.2e-34 149.4 82 84.1
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.6e-34 149.1 82 84.1
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 2.1e-34 148.7 82 82.9
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.1e-34 148.7 82 84.1
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 2.7e-34 148.3 82 84.1
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 3.6e-34 147.9 81 85.2
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 3.6e-34 147.9 81 85.2
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 3.6e-34 147.9 82 84.1
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 3.6e-34 147.9 82 85.4
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 4.7e-34 147.5 82 85.4
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 4.7e-34 147.5 82 85.4
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 6.1e-34 147.1 82 82.9
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 6.1e-34 147.1 82 84.1
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 6.1e-34 147.1 81 88.9
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 8.0e-34 146.7 82 85.4
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 8.0e-34 146.7 82 84.1
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.0e-33 146.4 82 85.4
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 1.0e-33 146.4 82 82.9
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 1.4e-33 146.0 81 87.7
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.8e-33 145.6 82 85.4
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 2.3e-33 145.2 82 82.9
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 2.3e-33 145.2 82 84.1
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 2.3e-33 145.2 82 84.1
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 3.0e-33 144.8 81 86.4
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 3.0e-33 144.8 82 82.9
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 3.0e-33 144.8 82 80.5
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 3.9e-33 144.4 82 84.1
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 3.9e-33 144.4 82 84.1
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 3.9e-33 144.4 82 84.1
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 3.9e-33 144.4 81 86.4
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 3.9e-33 144.4 82 80.5
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 3.9e-33 144.4 82 81.7
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 5.2e-33 144.1 82 82.9
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 5.2e-33 144.1 82 81.7
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 5.2e-33 144.1 82 82.9
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 6.7e-33 143.7 81 81.5
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 8.8e-33 143.3 82 81.7
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 8.8e-33 143.3 82 82.9
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 8.8e-33 143.3 82 84.1
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 8.8e-33 143.3 82 82.9
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 8.8e-33 143.3 82 82.9
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.1e-32 142.9 82 85.4
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 1.1e-32 142.9 82 82.9
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 1.1e-32 142.9 82 82.9
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.1e-32 142.9 82 82.9
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 1.1e-32 142.9 82 84.1
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 2.0e-32 142.1 81 85.2
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 2.0e-32 142.1 81 84.0
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 2.6e-32 141.7 82 82.9
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 2.6e-32 141.7 82 79.3
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 3.3e-32 141.4 82 82.9
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 3.3e-32 141.4 82 82.9
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 3.3e-32 141.4 81 82.7
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 3.3e-32 141.4 82 82.9
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 3.3e-32 141.4 82 81.7
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 4.4e-32 141.0 82 81.7
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 4.4e-32 141.0 82 82.9
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 4.4e-32 141.0 82 82.9
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 4.4e-32 141.0 82 82.9
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 4.4e-32 141.0 82 81.7
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 4.4e-32 141.0 82 82.9
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 4.4e-32 141.0 82 82.9
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 5.7e-32 140.6 82 81.7
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 7.4e-32 140.2 82 81.7
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 7.4e-32 140.2 82 81.7
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 1.3e-31 139.4 82 80.5
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.3e-31 139.4 82 81.7
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.7e-31 139.0 82 79.3
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 2.2e-31 138.7 81 80.2
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 2.2e-31 138.7 81 80.2
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 2.2e-31 138.7 82 79.3
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 2.2e-31 138.7 81 82.7
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 2.2e-31 138.7 81 82.7
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.8e-31 138.3 82 81.7
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 2.8e-31 138.3 82 81.7
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 2.8e-31 138.3 82 81.7
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 2.8e-31 138.3 82 81.7
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 3.7e-31 137.9 82 80.5
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 4.8e-31 137.5 81 80.2
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 4.8e-31 137.5 77 83.1
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 4.8e-31 137.5 83 79.5
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 1.4e-30 136.0 82 79.3
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.4e-30 136.0 82 81.7
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 1.8e-30 135.6 82 79.3
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 2.4e-30 135.2 82 78.0
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 2.4e-30 135.2 83 78.3
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 5.3e-30 134.0 80 80.0
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 5.3e-30 134.0 78 79.5
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 5.3e-30 134.0 82 76.8
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 5.3e-30 134.0 81 79.0
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 7.0e-30 133.7 81 80.2
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 7.0e-30 133.7 83 78.3
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 9.1e-30 133.3 81 77.8
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 1.2e-29 132.9 82 79.3
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.2e-29 132.9 78 80.8
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.6e-29 132.5 82 80.5
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 2.0e-29 132.1 82 78.0
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.6e-29 131.7 81 76.5
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-29 131.3 82 81.7
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-29 131.3 82 81.7
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-29 131.3 82 81.7
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-29 131.3 82 81.7
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-29 131.3 82 81.7
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-29 131.3 82 81.7
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 7.7e-29 130.2 77 80.5
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 7.7e-29 130.2 82 81.7
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.3e-28 129.4 72 83.3
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.3e-28 129.4 82 75.6
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 2.2e-28 128.6 82 72.0
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.9e-28 128.3 78 78.2
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 2.9e-28 128.3 82 79.3
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 3.8e-28 127.9 81 74.1
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.5e-27 125.9 82 73.2
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 2.5e-27 125.2 82 75.6
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 2.5e-27 125.2 82 75.6
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.5e-27 125.2 82 72.0
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 5.5e-27 124.0 82 78.0
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 1.6e-26 122.5 83 73.5
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 5.2e-25 117.5 83 67.5
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 8.8e-25 116.7 83 68.7
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 6.3e-23 110.5 64 81.2
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 7.0e-22 107.1 53 92.5
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 9.1e-22 106.7 59 83.1
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 2.7e-21 105.1 82 62.2
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 5.9e-21 104.0 84 61.9
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 6.8e-17 90.5 51 78.4
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 4.4e-16 87.8 44 88.6
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 7.0e-14 80.5 65 61.5
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 3.5e-13 78.2 48 75.0
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 1.1e-11 73.2 73 47.9
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.1e-11 73.2 62 56.5
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 2.5e-11 72.0 44 79.5
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 1.2e-10 69.7 69 49.3
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 8.0e-10 67.0 38 73.7
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 1.8e-09 65.9 69 53.6
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 2.3e-09 65.5 50 62.0
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 9.8e-08 60.1 33 75.8
COL.COLO4_35030 Corchorus olitorius HOM05D000001 ORTHO05D010435 8.3e-07 57.0 32 78.1
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.4e-06 56.2 85 37.6


User provided reference genes

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