Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 6.5e-250 867.8 830 100.0
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 2.4e-191 673.3 630 79.5
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 8.8e-130 468.8 573 69.1
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 5.0e-109 399.8 568 56.9
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 1.3e-104 385.2 554 54.2
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 1.5e-100 371.7 574 51.9
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.3e-88 332.0 287 72.1
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.7e-77 295.0 287 67.2
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.4e-74 285.4 220 73.6
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 3.4e-65 254.2 442 50.9
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 1.3e-64 252.3 199 68.3
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 4.9e-64 250.4 447 44.1
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 5.5e-63 246.9 219 63.9
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 8.7e-61 239.6 249 56.2
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 2.8e-59 234.6 225 59.6
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 6.2e-59 233.4 217 60.8
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 6.2e-59 233.4 219 63.5
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 8.1e-59 233.0 211 62.1
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 6.9e-58 229.9 200 63.5
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 9.0e-58 229.6 255 54.1
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 2.6e-57 228.0 236 56.8
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 3.4e-57 227.6 303 51.5
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 4.5e-57 227.3 208 61.5
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 2.2e-56 224.9 127 92.9
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.9e-55 221.9 287 50.5
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 3.2e-55 221.1 198 62.1
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 4.2e-55 220.7 152 75.7
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 7.9e-54 216.5 208 61.1
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 7.9e-54 216.5 146 78.1
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 1.3e-53 215.7 322 50.6
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 2.3e-53 214.9 211 59.7
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 3.9e-53 214.2 203 59.6
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 6.7e-53 213.4 152 72.4
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 1.5e-52 212.2 285 49.8
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.5e-52 212.2 240 55.4
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.9e-52 211.8 286 49.0
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.9e-52 211.8 204 60.8
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 9.6e-52 209.5 204 60.3
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 4.8e-51 207.2 238 55.9
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.8e-50 205.3 238 55.5
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 2.4e-50 204.9 258 50.0
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 4.1e-50 204.1 151 74.2
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 5.3e-50 203.8 294 46.6
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.0e-48 199.5 152 69.1
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.0e-48 199.5 228 54.8
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.0e-48 199.5 214 56.1
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.7e-48 198.7 287 48.4
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.8e-48 197.6 222 57.2
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 5.0e-48 197.2 208 56.2
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 5.0e-48 197.2 209 58.9
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 6.5e-48 196.8 154 72.7
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 8.4e-48 196.4 209 58.4
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.9e-47 195.3 227 58.1
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 2.5e-47 194.9 213 57.7
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 2.5e-47 194.9 227 53.7
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 2.5e-47 194.9 227 53.7
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 3.2e-47 194.5 282 50.4
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 3.2e-47 194.5 260 51.2
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 3.2e-47 194.5 260 51.2
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 4.2e-47 194.1 238 50.8
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 5.5e-47 193.7 209 56.9
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 5.5e-47 193.7 222 55.4
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 1.6e-46 192.2 250 52.0
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 3.5e-46 191.0 262 50.0
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 3.5e-46 191.0 153 70.6
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 3.5e-46 191.0 204 55.9
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 4.6e-46 190.7 210 56.7
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.0e-45 189.5 249 50.2
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.9e-45 187.6 282 48.9
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 5.1e-45 187.2 146 73.3
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 1.5e-44 185.7 146 72.6
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 2.5e-44 184.9 109 88.1
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.4e-44 183.3 153 67.3
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 9.7e-44 183.0 209 55.5
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 1.3e-43 182.6 146 67.1
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 1.6e-43 182.2 108 86.1
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 2.2e-43 181.8 265 51.3
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 2.8e-43 181.4 209 55.0
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 3.7e-43 181.0 147 70.1
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 6.3e-43 180.3 268 46.6
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 8.2e-43 179.9 153 66.7
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 1.1e-42 179.5 304 47.4
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 1.1e-42 179.5 105 89.5
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.8e-42 178.7 150 66.7
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 3.1e-42 177.9 146 65.8
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.5e-41 175.6 299 46.2
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 3.4e-41 174.5 218 51.4
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 3.4e-41 174.5 120 75.8
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 3.4e-41 174.5 150 66.7
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 4.5e-41 174.1 279 48.0
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 4.5e-41 174.1 149 65.1
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 5.0e-40 170.6 234 49.1
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 5.0e-40 170.6 282 47.9
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 5.0e-40 170.6 109 77.1
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 8.5e-40 169.9 119 78.2
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.5e-39 168.3 215 50.2
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 2.5e-39 168.3 112 75.9
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 9.4e-39 166.4 274 45.6
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.2e-38 166.0 145 63.4
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.7e-38 164.9 133 68.4
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 6.1e-38 163.7 103 79.6
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 7.9e-38 163.3 134 70.1
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 6.7e-37 160.2 149 59.1
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 2.0e-36 158.7 152 59.2
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 2.5e-36 158.3 152 56.6
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 4.3e-36 157.5 153 56.9
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 9.7e-36 156.4 283 45.6
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.3e-35 156.0 119 68.9
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.2e-35 155.2 145 57.9
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 1.4e-34 152.5 95 83.2
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 3.4e-33 147.9 145 53.1
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 4.5e-33 147.5 227 48.0
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.0e-32 146.4 133 63.9
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.3e-32 146.0 227 46.3
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 2.2e-32 145.2 138 58.7
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 3.6e-30 137.9 95 76.8
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 4.7e-30 137.5 90 71.1
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 2.3e-29 135.2 144 54.9
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 5.1e-29 134.0 214 45.3
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.5e-28 132.5 81 85.2
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 2.0e-28 132.1 80 78.8
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 4.4e-28 131.0 206 48.1
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 5.7e-28 130.6 147 55.1
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 5.7e-28 130.6 147 55.1
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.7e-27 129.0 115 66.1
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 6.3e-27 127.1 285 37.2
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 8.2e-27 126.7 115 65.2
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.1e-26 126.3 105 63.8
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.6e-25 122.5 109 60.6
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.5e-25 120.9 140 54.3
Medtr1g010090 Medicago truncatula HOM05D004041 ORTHO05D004564 7.7e-25 120.2 435 37.9
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.5e-23 115.2 121 53.7
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.2e-22 112.8 106 56.6
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 2.7e-22 111.7 105 57.1
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 6.1e-22 110.5 104 58.7
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 8.0e-22 110.2 102 55.9
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 8.0e-22 110.2 105 56.2
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 1.4e-21 109.4 240 35.8
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 1.4e-21 109.4 109 55.0
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 4.0e-21 107.8 104 55.8
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 4.0e-21 107.8 104 55.8
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 6.7e-21 107.1 211 43.6
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 6.7e-21 107.1 101 56.4
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 1.5e-20 105.9 107 56.1
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 2.0e-20 105.5 151 44.4
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 4.4e-20 104.4 104 56.7
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 4.8e-19 100.9 105 48.6
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.1e-18 99.8 52 90.4
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 3.1e-18 98.2 112 52.7
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.3e-16 92.8 197 40.6
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.3e-16 92.8 192 36.5
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 6.5e-16 90.5 241 39.4
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 2.7e-14 85.1 66 71.2
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 4.7e-14 84.3 97 45.4
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 1.4e-13 82.8 106 48.1
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 2.3e-13 82.0 150 38.7
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.5e-12 79.3 112 42.0
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 1.5e-12 79.3 55 76.4
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 5.7e-12 77.4 83 55.4
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 4.8e-11 74.3 150 34.0
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.4e-10 72.8 153 41.2
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.8e-10 72.4 67 55.2
arahy.Tifrunner.gnm1.ann1.EPLR59 Arachis hypogaea HOM05D004041 ORTHO05D004564 4.1e-10 71.2 84 56.0
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 5.4e-10 70.9 67 59.7
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 2.5e-07 62.0 64 50.0
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 7.2e-07 60.5 55 52.7


User provided reference genes

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