Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G200100 Glycine max HOM05D003075 ORTHO05D003430 4.6e-21 103.6 51 100.0
Lj3g0026412 Lotus japonicus HOM05D003075 ORTHO05D003430 1.2e-18 95.5 50 90.0
Glyma.17G254400 Glycine max HOM05D003075 ORTHO05D003430 1.6e-18 95.1 50 92.0
Glyma.17G254800 Glycine max HOM05D003075 ORTHO05D003430 2.1e-18 94.7 50 92.0
Phvul.010G084500 Phaseolus vulgaris HOM05D003075 ORTHO05D003430 2.8e-18 94.4 50 88.0
VMungo0331G0754 Vigna mungo HOM05D003075 ORTHO05D003430 2.8e-18 94.4 50 88.0
arahy.Tifrunner.gnm1.ann1.G5NZ7A Arachis hypogaea HOM05D003075 ORTHO05D003430 3.6e-18 94.0 50 88.0
arahy.Tifrunner.gnm1.ann1.RSD9A8 Arachis hypogaea HOM05D003075 ORTHO05D003430 4.7e-18 93.6 50 88.0
Haze_16798 Corylus avellana HOM05D003075 ORTHO05D003430 6.2e-18 93.2 50 90.0
Glyma.17G199600 Glycine max HOM05D003075 ORTHO05D003430 6.2e-18 93.2 50 88.0
arahy.Tifrunner.gnm1.ann1.7U8F1S Arachis hypogaea HOM05D003075 ORTHO05D003430 1.1e-17 92.4 50 86.0
TPR.G9841 Trifolium pratense HOM05D003075 ORTHO05D003430 1.1e-17 92.4 50 88.0
Cfa001744 Carpinus fangiana HOM05D003075 ORTHO05D003430 1.4e-17 92.0 50 88.0
Dinv43697 Davidia involucrata HOM05D003075 ORTHO05D003430 1.8e-17 91.7 50 88.0
Gorai.004G162500 Gossypium raimondii HOM05D003075 ORTHO05D003430 1.8e-17 91.7 50 86.0
MBI12_g31643_MAGBIO Magnolia biondii HOM05D003075 ORTHO05D003430 2.4e-17 91.3 50 86.0
Medtr4g023500 Medicago truncatula HOM05D003075 ORTHO05D003430 2.4e-17 91.3 50 86.0
Thecc.01G378100 Theobroma cacao HOM05D003075 ORTHO05D003430 2.4e-17 91.3 50 88.0
CiPaw.09G176300 Carya illinoinensis HOM05D003075 ORTHO05D003430 3.1e-17 90.9 50 86.0
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 3.1e-17 90.9 50 86.0
GSVIVG01027678001 Vitis vinifera HOM05D003075 ORTHO05D003430 3.1e-17 90.9 50 86.0
GSVIVG01027679001 Vitis vinifera HOM05D003075 ORTHO05D003430 3.1e-17 90.9 50 86.0
Ca_19898_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 4.0e-17 90.5 50 86.0
Lj9A568T64 Lonicera japonica HOM05D003075 ORTHO05D003430 4.0e-17 90.5 50 86.0
Sabra02G0114300 Salix brachista HOM05D003075 ORTHO05D003430 4.0e-17 90.5 50 84.0
SGA_v2.0_scaffold43G16486 Striga asiatica HOM05D003075 ORTHO05D003430 4.0e-17 90.5 50 86.0
TWI23G0023 Tripterygium wilfordii HOM05D003075 ORTHO05D003430 4.0e-17 90.5 50 84.0
arahy.Tifrunner.gnm1.ann1.2E18SB Arachis hypogaea HOM05D003075 ORTHO05D003430 5.2e-17 90.1 50 82.0
FvH4_7g11590 Fragaria vesca HOM05D003075 ORTHO05D003430 5.2e-17 90.1 50 84.0
FAN03G3200 Fragaria x ananassa HOM05D003075 ORTHO05D003430 5.2e-17 90.1 50 84.0
FAN06G2161 Fragaria x ananassa HOM05D003075 ORTHO05D003430 5.2e-17 90.1 50 84.0
FAN06G4578 Fragaria x ananassa HOM05D003075 ORTHO05D003430 5.2e-17 90.1 50 84.0
FAN10G3608 Fragaria x ananassa HOM05D003075 ORTHO05D003430 5.2e-17 90.1 50 84.0
Lalb_Chr12g0208211 Lupinus albus HOM05D003075 ORTHO05D003430 5.2e-17 90.1 50 84.0
RcHm_v2.0_Chr1g0350011 Rosa chinensis HOM05D003075 ORTHO05D003430 5.2e-17 90.1 50 84.0
SGA_v2.0_scaffold11G05572 Striga asiatica HOM05D003075 ORTHO05D003430 5.2e-17 90.1 50 86.0
Gohir.D08G156200 Gossypium hirsutum HOM05D003075 ORTHO05D003430 6.8e-17 89.7 50 86.0
Peaxi162Scf00013g03226 Petunia axillaris HOM05D003075 ORTHO05D003430 6.8e-17 89.7 50 80.0
Duzib138G0067 Durio zibethinus HOM05D003075 ORTHO05D003430 8.9e-17 89.4 50 84.0
Duzib138G1594 Durio zibethinus HOM05D003075 ORTHO05D003430 8.9e-17 89.4 50 84.0
Medtr4g084670 Medicago truncatula HOM05D003075 ORTHO05D003430 8.9e-17 89.4 50 84.0
Psat7g231560 Pisum sativum HOM05D003075 ORTHO05D003430 8.9e-17 89.4 50 84.0
Potri.002G117000 Populus trichocarpa HOM05D003075 ORTHO05D003430 8.9e-17 89.4 50 84.0
FAN10G0718 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.2e-16 89.0 50 82.0
Potri.013G094500 Populus trichocarpa HOM05D003075 ORTHO05D003430 1.2e-16 89.0 50 82.0
Prupe.2G143900 Prunus persica HOM05D003075 ORTHO05D003430 1.2e-16 89.0 50 84.0
QL08p052672 Quercus lobata HOM05D003075 ORTHO05D003430 1.2e-16 89.0 50 84.0
FAN10G4316 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.5e-16 88.6 50 82.0
Gohir.D05G389001 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.5e-16 88.6 50 86.0
Nn1g01143 Nelumbo nucifera HOM05D003075 ORTHO05D003430 1.5e-16 88.6 50 82.0
Rhsim07G0028400 Rhododendron simsii HOM05D003075 ORTHO05D003430 1.5e-16 88.6 50 84.0
CSS0007073 Camellia sinensis var. sinensis HOM05D003075 ORTHO05D003430 2.0e-16 88.2 50 84.0
CsaV3_3G009750 Cucumis sativus L. HOM05D003075 ORTHO05D003430 2.0e-16 88.2 50 82.0
Migut.N01626 Erythranthe guttata HOM05D003075 ORTHO05D003430 2.0e-16 88.2 50 84.0
Nitab4.5_0000457g0150 Nicotiana tabacum HOM05D003075 ORTHO05D003430 2.0e-16 88.2 50 82.0
Cc02_g24000 Coffea canephora HOM05D003075 ORTHO05D003430 2.6e-16 87.8 50 82.0
DCAR_008556 Daucus carota HOM05D003075 ORTHO05D003430 2.6e-16 87.8 50 78.0
ATR0733G147 Amborella trichopoda HOM05D003075 ORTHO05D003430 3.4e-16 87.4 50 82.0
Ciclev10009039m.g Citrus clementina HOM05D003075 ORTHO05D003430 3.4e-16 87.4 50 82.0
FAN01G2913 Fragaria x ananassa HOM05D003075 ORTHO05D003430 4.4e-16 87.0 50 82.0
SalBow7G2967 Salvia bowleyana HOM05D003075 ORTHO05D003430 4.4e-16 87.0 50 78.0
MELO3C006196.2 Cucumis melo HOM05D003075 ORTHO05D003430 5.8e-16 86.7 50 80.0
Lsat_1_v5_gn_7_9801 Lactuca sativa HOM05D003075 ORTHO05D003430 5.8e-16 86.7 50 80.0
Nitab4.5_0005272g0010 Nicotiana tabacum HOM05D003075 ORTHO05D003430 5.8e-16 86.7 50 78.0
Oeu064471.1 Olea europaea HOM05D003075 ORTHO05D003430 5.8e-16 86.7 50 80.0
Atru.chr5.294 Acer truncatum HOM05D003075 ORTHO05D003430 7.6e-16 86.3 50 80.0
MD07G1120400 Malus domestica HOM05D003075 ORTHO05D003430 7.6e-16 86.3 50 80.0
SalBow5G2038 Salvia bowleyana HOM05D003075 ORTHO05D003430 7.6e-16 86.3 50 82.0
MSTRG.4898 Avicennia marina HOM05D003075 ORTHO05D003430 9.9e-16 85.9 50 82.0
Glyma.03G023800 Glycine max HOM05D003075 ORTHO05D003430 9.9e-16 85.9 47 87.2
MD00G1100000 Malus domestica HOM05D003075 ORTHO05D003430 1.3e-15 85.5 50 78.0
Nn4g26370 Nelumbo nucifera HOM05D003075 ORTHO05D003430 1.3e-15 85.5 50 80.0
Sed0011315 Sechium edule HOM05D003075 ORTHO05D003430 1.3e-15 85.5 50 82.0
Nitab4.5_0004552g0030 Nicotiana tabacum HOM05D003075 ORTHO05D003430 1.7e-15 85.1 50 78.0
Cpa.g.sc11.49 Carica papaya HOM05D003075 ORTHO05D003430 2.2e-15 84.7 50 80.0
Manes.01G266500 Manihot esculenta HOM05D003075 ORTHO05D003430 2.2e-15 84.7 50 80.0
PGR042G3567 Punica granatum HOM05D003075 ORTHO05D003430 2.2e-15 84.7 50 80.0
Solyc01g091210.3 Solanum lycopersicum HOM05D003075 ORTHO05D003430 2.2e-15 84.7 50 78.0
Sopen01g036960 Solanum pennellii HOM05D003075 ORTHO05D003430 2.2e-15 84.7 50 78.0
TWI14G0663 Tripterygium wilfordii HOM05D003075 ORTHO05D003430 2.2e-15 84.7 50 78.0
Aqoxy5G02554 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 2.9e-15 84.3 51 74.5
Hma1.2p1_0446F.1_g154650 Hydrangea macrophylla HOM05D003075 ORTHO05D003430 3.8e-15 84.0 50 76.0
Os06g0134050 Oryza sativa ssp. japonica HOM05D003075 ORTHO05D003430 3.8e-15 84.0 50 78.0
THA.LOC104819580 Tarenaya hassleriana HOM05D003075 ORTHO05D003430 3.8e-15 84.0 50 78.0
PGSC0003DMG402025960 Solanum tuberosum HOM05D003075 ORTHO05D003430 4.9e-15 83.6 50 76.0
Aqoxy5G02556 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 6.4e-15 83.2 48 77.1
CAN.G388.29 Capsicum annuum HOM05D003075 ORTHO05D003430 6.4e-15 83.2 50 76.0
Ca_17564_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 8.4e-15 82.8 50 84.0
PSO384G4045 Papaver somniferum HOM05D003075 ORTHO05D003430 8.4e-15 82.8 50 78.0
Sc23g0003640 Simmondsia chinensis HOM05D003075 ORTHO05D003430 8.4e-15 82.8 50 78.0
CANSAT35G1223 Cannabis sativa HOM05D003075 ORTHO05D003430 1.1e-14 82.4 50 76.0
Eucgr.D02463 Eucalyptus grandis HOM05D003075 ORTHO05D003430 1.1e-14 82.4 50 76.0
Gohir.D02G000100 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.1e-14 82.4 47 85.1
Oeu003479.1 Olea europaea HOM05D003075 ORTHO05D003430 1.1e-14 82.4 47 80.9
Aqoxy5G02670 Aquilegia oxysepala HOM05D003075 ORTHO05D003430 1.4e-14 82.0 47 76.6
HanXRQChr04g0122761 Helianthus annuus HOM05D003075 ORTHO05D003430 1.4e-14 82.0 50 78.0
Zm00001eb244410 Zea mays HOM05D003075 ORTHO05D003430 1.4e-14 82.0 50 76.0
Lsat_1_v5_gn_8_86100 Lactuca sativa HOM05D003075 ORTHO05D003430 1.9e-14 81.6 49 73.5
Gohir.A01G125075 Gossypium hirsutum HOM05D003075 ORTHO05D003430 3.2e-14 80.9 46 84.8
Gohir.A02G078703 Gossypium hirsutum HOM05D003075 ORTHO05D003430 3.2e-14 80.9 46 84.8
Gohir.A05G324955 Gossypium hirsutum HOM05D003075 ORTHO05D003430 3.2e-14 80.9 46 84.8
Gohir.A07G188680 Gossypium hirsutum HOM05D003075 ORTHO05D003430 3.2e-14 80.9 46 84.8
Gohir.D02G170625 Gossypium hirsutum HOM05D003075 ORTHO05D003430 3.2e-14 80.9 46 84.8
Gohir.D07G116420 Gossypium hirsutum HOM05D003075 ORTHO05D003430 3.2e-14 80.9 46 84.8
Gohir.D08G140725 Gossypium hirsutum HOM05D003075 ORTHO05D003430 3.2e-14 80.9 46 84.8
Gohir.D10G086848 Gossypium hirsutum HOM05D003075 ORTHO05D003430 3.2e-14 80.9 46 84.8
Gohir.D12G206056 Gossypium hirsutum HOM05D003075 ORTHO05D003430 3.2e-14 80.9 46 84.8
Gorai.002G173800 Gossypium raimondii HOM05D003075 ORTHO05D003430 3.2e-14 80.9 46 84.8
Hund17026 Selenicereus undatus HOM05D003075 ORTHO05D003430 3.2e-14 80.9 50 74.0
ECA236G1357 Erigeron canadensis HOM05D003075 ORTHO05D003430 4.2e-14 80.5 50 76.0
Ah.05g174300 Amaranthus hybridus HOM05D003075 ORTHO05D003430 5.4e-14 80.1 49 69.4
Gorai.003G063700 Gossypium raimondii HOM05D003075 ORTHO05D003430 7.1e-14 79.7 46 82.6
SEGI_11423 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 7.1e-14 79.7 50 70.0
Gorai.012G088100 Gossypium raimondii HOM05D003075 ORTHO05D003430 9.2e-14 79.3 46 82.6
BcaB02g08941 Brassica carinata HOM05D003075 ORTHO05D003430 1.2e-13 79.0 50 72.0
A05p05260 Brassica napus HOM05D003075 ORTHO05D003430 1.2e-13 79.0 50 72.0
C04p06230 Brassica napus HOM05D003075 ORTHO05D003430 1.2e-13 79.0 50 72.0
BraA05t19496Z Brassica rapa HOM05D003075 ORTHO05D003430 1.2e-13 79.0 50 72.0
Aa31LG1G26840 Aethionema arabicum HOM05D003075 ORTHO05D003430 1.6e-13 78.6 50 70.0
CDE09G0478 Ceratophyllum demersum HOM05D003075 ORTHO05D003430 1.6e-13 78.6 50 70.0
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.6e-13 78.6 45 82.2
PSO478G3315 Papaver somniferum HOM05D003075 ORTHO05D003430 1.6e-13 78.6 50 70.0
Sp4g27360 Schrenkiella parvula HOM05D003075 ORTHO05D003430 1.6e-13 78.6 50 70.0
BcaC02g12230 Brassica carinata HOM05D003075 ORTHO05D003430 2.1e-13 78.2 50 72.0
C04p06190 Brassica napus HOM05D003075 ORTHO05D003430 2.1e-13 78.2 50 72.0
Lj7C530G5 Lonicera japonica HOM05D003075 ORTHO05D003430 2.1e-13 78.2 45 80.0
BcaC02g12227 Brassica carinata HOM05D003075 ORTHO05D003430 2.7e-13 77.8 50 70.0
BolC4t22246H Brassica oleracea HOM05D003075 ORTHO05D003430 2.7e-13 77.8 50 70.0
CARHR140540 Cardamine hirsuta HOM05D003075 ORTHO05D003430 3.5e-13 77.4 50 70.0
Thhalv10001570m.g Eutrema salsugineum HOM05D003075 ORTHO05D003430 3.5e-13 77.4 50 70.0
Gohir.D01G222050 Gossypium hirsutum HOM05D003075 ORTHO05D003430 4.6e-13 77.0 50 76.0
Gorai.002G268800 Gossypium raimondii HOM05D003075 ORTHO05D003430 4.6e-13 77.0 50 76.0
Carub.0004s2796 Capsella rubella HOM05D003075 ORTHO05D003430 6.0e-13 76.6 50 70.0
AL4G44430 Arabidopsis lyrata HOM05D003075 ORTHO05D003430 7.8e-13 76.3 50 70.0
BraA05t19501Z Brassica rapa HOM05D003075 ORTHO05D003430 7.8e-13 76.3 50 68.0
vmacro13410 Vaccinium macrocarpon HOM05D003075 ORTHO05D003430 1.0e-12 75.9 69 59.4
AT2G45330 Arabidopsis thaliana HOM05D003075 ORTHO05D003430 1.3e-12 75.5 50 66.0
EL10Ac1g00881 Beta vulgaris HOM05D003075 ORTHO05D003430 1.3e-12 75.5 50 68.0
BcaB02g08966 Brassica carinata HOM05D003075 ORTHO05D003430 1.3e-12 75.5 50 70.0
AagrBONN_evm.TU.Sc2ySwM_344.2903 Anthoceros agrestis HOM05D003075 ORTHO05D003430 2.3e-12 74.7 49 73.5
BcaB02g08945 Brassica carinata HOM05D005501 ORTHO05D007485 2.3e-12 74.7 48 70.8
A04p33740 Brassica napus HOM05D003075 ORTHO05D003430 2.3e-12 74.7 50 68.0
Thhalv10019720m.g Eutrema salsugineum HOM05D003075 ORTHO05D003430 2.3e-12 74.7 50 66.0
Pp3c9_2940 Physcomitrium patens HOM05D003075 ORTHO05D003430 2.3e-12 74.7 48 66.7
BolC4t22244H Brassica oleracea HOM05D003075 ORTHO05D003430 3.0e-12 74.3 50 68.0
AUR62013643 Chenopodium quinoa HOM05D003075 ORTHO05D003430 3.9e-12 73.9 49 65.3
BraA04t18836Z Brassica rapa HOM05D003075 ORTHO05D003430 1.1e-11 72.4 50 64.0
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.1e-11 72.4 41 80.5
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.9e-11 71.6 41 80.5
AUR62004205 Chenopodium quinoa HOM05D003075 ORTHO05D003430 2.5e-11 71.2 49 59.2
Mapoly0104s0031 Marchantia polymorpha HOM05D003075 ORTHO05D003430 2.5e-11 71.2 48 66.7
BcaC03g15792 Brassica carinata HOM05D003075 ORTHO05D003430 5.6e-11 70.1 51 66.7
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 9.6e-11 69.3 41 80.5
SMO147G0017 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 9.6e-11 69.3 48 62.5
SMO199G0023 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 9.6e-11 69.3 48 62.5
SMO364G0475 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 1.6e-10 68.6 48 66.7
C02p35350 Brassica napus HOM05D003075 ORTHO05D003430 2.1e-10 68.2 52 65.4
AUR62018381 Chenopodium quinoa HOM05D003075 ORTHO05D003430 2.8e-10 67.8 53 60.4
SMO361G0010 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 2.8e-10 67.8 48 60.4
CDE11G0696 Ceratophyllum demersum HOM05D003075 ORTHO05D003430 3.6e-10 67.4 45 71.1
SMO201G0115 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 3.6e-10 67.4 48 60.4
SMO364G0829 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 4.8e-10 67.0 48 58.3
AT5G23600 Arabidopsis thaliana HOM05D003075 ORTHO05D003430 6.2e-10 66.6 50 58.0
BolC2t09550H Brassica oleracea HOM05D003075 ORTHO05D003430 1.8e-09 65.1 51 62.7
Ca_19890_v3 Cicer arietinum L. HOM05D003075 ORTHO05D003430 4.0e-09 63.9 36 77.8
Gohir.D05G000101 Gossypium hirsutum HOM05D003075 ORTHO05D003430 5.3e-09 63.5 32 93.8
Gohir.1Z049439 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.5e-08 62.0 32 90.6
Gohir.D13G000332 Gossypium hirsutum HOM05D003075 ORTHO05D003430 1.5e-08 62.0 32 90.6
CBR_g28889 Chara braunii HOM05D003075 ORTHO05D003430 3.4e-08 60.8 48 50.0
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 4.4e-08 60.5 34 85.3
Gohir.A05G240901 Gossypium hirsutum HOM05D003075 ORTHO05D003430 4.4e-08 60.5 33 87.9
Gohir.A11G286400 Gossypium hirsutum HOM05D003075 ORTHO05D003430 4.4e-08 60.5 33 87.9
Gohir.D03G091900 Gossypium hirsutum HOM05D003075 ORTHO05D003430 4.4e-08 60.5 33 87.9
Gohir.D10G134300 Gossypium hirsutum HOM05D003075 ORTHO05D003430 4.4e-08 60.5 33 87.9
SEGI_22200 Sequoiadendron giganteum HOM05D003075 ORTHO05D003430 4.4e-08 60.5 49 59.2
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 5.8e-08 60.1 34 82.4
Gorai.001G000200 Gossypium raimondii HOM05D003075 ORTHO05D003430 1.3e-07 58.9 32 87.5
Gohir.D08G007101 Gossypium hirsutum HOM05D003075 ORTHO05D003430 4.9e-07 57.0 32 84.4
SMO347G0280 Selaginella moellendorffii HOM05D003075 ORTHO05D003430 8.4e-07 56.2 48 47.9
BraA02t07203Z Brassica rapa HOM05D003075 ORTHO05D003430 1.4e-06 55.5 50 56.0
PSO135G0225 Papaver somniferum HOM05D003075 ORTHO05D003430 1.4e-06 55.5 36 66.7
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 2.4e-06 54.7 48 56.2
AUR62043207 Chenopodium quinoa HOM05D003075 ORTHO05D003430 5.4e-06 53.5 32 71.9


User provided reference genes

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