Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G028800 Glycine max HOM05D003314 ORTHO05D035932 1.4e-44 182.6 89 100.0
Glyma.17G189950 Glycine max HOM05D003314 ORTHO05D035932 1.4e-44 182.6 89 100.0
Glyma.11G169700 Glycine max HOM05D003314 ORTHO05D004164 6.7e-36 153.7 77 96.1
Glyma.18G060600 Glycine max HOM05D003314 ORTHO05D004164 2.0e-35 152.1 77 94.8
Phvul.006G069900 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 2.0e-35 152.1 77 94.8
VMungo0540G1658 Vigna mungo HOM05D003314 ORTHO05D004164 2.0e-35 152.1 77 94.8
arahy.Tifrunner.gnm1.ann1.99UL3I Arachis hypogaea HOM05D003314 ORTHO05D004164 5.7e-35 150.6 79 89.9
Lj6g0001244 Lotus japonicus HOM05D003314 ORTHO05D004164 6.3e-34 147.1 77 90.9
Ca_14964_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 8.2e-34 146.7 77 90.9
TPR.G32920 Trifolium pratense HOM05D003314 ORTHO05D004164 1.1e-33 146.4 77 90.9
arahy.Tifrunner.gnm1.ann1.H173G9 Arachis hypogaea HOM05D003314 ORTHO05D004164 1.8e-33 145.6 77 89.6
Medtr5g071900 Medicago truncatula HOM05D003314 ORTHO05D004164 5.3e-33 144.1 77 89.6
PSO017G4706 Papaver somniferum HOM05D003314 ORTHO05D004164 7.0e-33 143.7 77 89.6
PSO170G0130 Papaver somniferum HOM05D003314 ORTHO05D004164 7.0e-33 143.7 77 89.6
Nn2g10926 Nelumbo nucifera HOM05D003314 ORTHO05D004164 9.1e-33 143.3 77 89.6
SGA_v2.0_scaffold120G32908 Striga asiatica HOM05D003314 ORTHO05D004164 9.1e-33 143.3 78 85.9
LjContig00141g0002673 Lotus japonicus HOM05D003314 ORTHO05D004164 1.2e-32 142.9 77 89.6
MBI15_g29380_MAGBIO Magnolia biondii HOM05D003314 ORTHO05D004164 1.2e-32 142.9 77 89.6
Psat5g157680 Pisum sativum HOM05D003314 ORTHO05D004164 1.2e-32 142.9 77 89.6
Glyma.02G228700 Glycine max HOM05D003314 ORTHO05D004164 1.6e-32 142.5 77 89.6
Medtr3g464770 Medicago truncatula HOM05D003314 ORTHO05D004164 1.6e-32 142.5 77 88.3
Manes.18G141800 Manihot esculenta HOM05D003314 ORTHO05D004164 2.0e-32 142.1 77 87.0
Eucgr.J01899 Eucalyptus grandis HOM05D003314 ORTHO05D004164 2.6e-32 141.7 77 87.0
Nitab4.5_0000752g0070 Nicotiana tabacum HOM05D003314 ORTHO05D004164 2.6e-32 141.7 77 87.0
Potri.009G073800 Populus trichocarpa HOM05D003314 ORTHO05D004164 2.6e-32 141.7 77 87.0
Nitab4.5_0000839g0080 Nicotiana tabacum HOM05D003314 ORTHO05D004164 3.5e-32 141.4 77 88.3
Nitab4.5_0002352g0010 Nicotiana tabacum HOM05D003314 ORTHO05D004164 3.5e-32 141.4 77 88.3
Lalb_Chr15g0083041 Lupinus albus HOM05D003314 ORTHO05D004164 4.5e-32 141.0 77 89.6
TAR636G0028 Trochodendron aralioides HOM05D003314 ORTHO05D002223 4.5e-32 141.0 78 88.5
HPP92_013781 Vanilla planifolia HOM05D003314 ORTHO05D004164 4.5e-32 141.0 77 85.7
ATR0681G099 Amborella trichopoda HOM05D003314 ORTHO05D004164 5.9e-32 140.6 77 87.0
Aqoxy4G02458 Aquilegia oxysepala HOM05D003314 ORTHO05D004164 5.9e-32 140.6 77 88.3
Ciclev10027872m.g Citrus clementina HOM05D003314 ORTHO05D004164 5.9e-32 140.6 77 87.0
SGA_v2.0_scaffold146G36142 Striga asiatica HOM05D003314 ORTHO05D004164 5.9e-32 140.6 77 85.7
TAR636G3324 Trochodendron aralioides HOM05D003314 ORTHO05D004164 5.9e-32 140.6 77 89.6
CiPaw.13G074400 Carya illinoinensis HOM05D003314 ORTHO05D004164 7.7e-32 140.2 77 85.7
Glyma.14G195700 Glycine max HOM05D003314 ORTHO05D004164 7.7e-32 140.2 77 88.3
Peaxi162Scf00540g00022 Petunia axillaris HOM05D003314 ORTHO05D004164 7.7e-32 140.2 77 87.0
QL01p039122 Quercus lobata HOM05D003314 ORTHO05D004164 7.7e-32 140.2 77 84.4
TAR623G0703 Trochodendron aralioides HOM05D003314 ORTHO05D004164 7.7e-32 140.2 77 87.0
COL.COLO4_11092 Corchorus olitorius HOM05D003314 ORTHO05D004164 1.0e-31 139.8 77 87.0
Phvul.008G259400 Phaseolus vulgaris HOM05D003314 ORTHO05D004164 1.0e-31 139.8 77 88.3
Psat2g055960 Pisum sativum HOM05D003314 ORTHO05D004164 1.0e-31 139.8 77 88.3
PGR119G0996 Punica granatum HOM05D003314 ORTHO05D004164 1.0e-31 139.8 76 86.8
Sopen06g033530 Solanum pennellii HOM05D003314 ORTHO05D004164 1.0e-31 139.8 77 87.0
PGSC0003DMG400030370 Solanum tuberosum HOM05D003314 ORTHO05D004164 1.0e-31 139.8 77 87.0
Sabra09G0055800 Salix brachista HOM05D003314 ORTHO05D004164 1.3e-31 139.4 77 85.7
GSVIVG01024699001 Vitis vinifera HOM05D003314 ORTHO05D004164 1.3e-31 139.4 77 85.7
Duzib168G0330 Durio zibethinus HOM05D003314 ORTHO05D004164 1.7e-31 139.0 77 84.4
Migut.N00780 Erythranthe guttata HOM05D003314 ORTHO05D004164 1.7e-31 139.0 77 84.4
Thecc.09G352300 Theobroma cacao HOM05D003314 ORTHO05D004164 1.7e-31 139.0 77 84.4
MSTRG.12679 Avicennia marina HOM05D003314 ORTHO05D004164 2.2e-31 138.7 76 85.5
Hma1.2p1_1981F.1_g309920 Hydrangea macrophylla HOM05D003314 ORTHO05D004164 2.2e-31 138.7 77 84.4
SalBow2G2371 Salvia bowleyana HOM05D003314 ORTHO05D004164 2.2e-31 138.7 77 85.7
Solyc06g082150.4 Solanum lycopersicum HOM05D003314 ORTHO05D004164 2.2e-31 138.7 77 85.7
MELO3C026830.2 Cucumis melo HOM05D003314 ORTHO05D004164 2.9e-31 138.3 77 88.3
Gohir.A03G028500 Gossypium hirsutum HOM05D003314 ORTHO05D004164 2.9e-31 138.3 77 84.4
Gohir.D03G140100 Gossypium hirsutum HOM05D003314 ORTHO05D004164 2.9e-31 138.3 77 84.4
Gorai.003G146900 Gossypium raimondii HOM05D003314 ORTHO05D004164 2.9e-31 138.3 77 84.4
TPR.G5069 Trifolium pratense HOM05D003314 ORTHO05D004164 2.9e-31 138.3 77 88.3
Cc01_g14510 Coffea canephora HOM05D003314 ORTHO05D004164 5.0e-31 137.5 77 83.1
Aa31LG1G6350 Aethionema arabicum HOM05D003314 ORTHO05D004164 6.5e-31 137.1 77 83.1
Haze_24369 Corylus avellana HOM05D003314 ORTHO05D004164 6.5e-31 137.1 77 87.0
Dinv09644 Davidia involucrata HOM05D003314 ORTHO05D004164 6.5e-31 137.1 77 81.8
Zm00001eb013550 Zea mays HOM05D003314 ORTHO05D004164 6.5e-31 137.1 77 87.0
A09p66600 Brassica napus HOM05D003314 ORTHO05D004164 8.5e-31 136.7 77 81.8
BraA09t42000Z Brassica rapa HOM05D003314 ORTHO05D004164 8.5e-31 136.7 77 81.8
ClCG02G019450 Citrullus lanatus HOM05D003314 ORTHO05D004164 8.5e-31 136.7 77 87.0
CiPaw.14G057100 Carya illinoinensis HOM05D003314 ORTHO05D004164 1.1e-30 136.3 77 83.1
Duzib150G1198 Durio zibethinus HOM05D003314 ORTHO05D004164 1.1e-30 136.3 77 84.4
HanXRQChr01g0011671 Helianthus annuus HOM05D003314 ORTHO05D004164 1.1e-30 136.3 77 81.8
MD11G1068700 Malus domestica HOM05D003314 ORTHO05D004164 1.1e-30 136.3 77 81.8
Atru.chr3.4168 Acer truncatum HOM05D003314 ORTHO05D004164 1.5e-30 136.0 77 81.8
Actinidia32630 Actinidia chinensis HOM05D003314 ORTHO05D004164 1.5e-30 136.0 79 79.7
MSTRG.17878 Avicennia marina HOM05D003314 ORTHO05D004164 1.5e-30 136.0 77 81.8
CAN.G1095.9 Capsicum annuum HOM05D003314 ORTHO05D004164 1.9e-30 135.6 77 83.1
Cfa011730 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.9e-30 135.6 77 85.7
Potri.001G279100 Populus trichocarpa HOM05D003314 ORTHO05D004164 1.9e-30 135.6 76 84.2
Rhsim13G0067500 Rhododendron simsii HOM05D003314 ORTHO05D004164 1.9e-30 135.6 77 81.8
Sc21g0000200 Simmondsia chinensis HOM05D003314 ORTHO05D004164 1.9e-30 135.6 85 75.3
CDE12G0377 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 2.5e-30 135.2 79 81.0
THA.LOC104800751 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 2.5e-30 135.2 76 84.2
AL1G17230 Arabidopsis lyrata HOM05D003314 ORTHO05D004164 3.2e-30 134.8 77 81.8
CSS0023090 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 3.2e-30 134.8 77 81.8
Carub.0001s0639 Capsella rubella HOM05D003314 ORTHO05D004164 3.2e-30 134.8 77 81.8
Ca_05629_v3 Cicer arietinum L. HOM05D003314 ORTHO05D004164 3.2e-30 134.8 77 81.8
Thhalv10006901m.g Eutrema salsugineum HOM05D003314 ORTHO05D004164 3.2e-30 134.8 77 80.5
Os05g0164100 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 3.2e-30 134.8 77 83.1
RcHm_v2.0_Chr5g0070401 Rosa chinensis HOM05D003314 ORTHO05D004164 3.2e-30 134.8 77 84.4
CsaV3_6G016080 Cucumis sativus L. HOM05D003314 ORTHO05D004164 4.2e-30 134.4 77 85.7
arahy.Tifrunner.gnm1.ann1.Y0JIV8 Arachis hypogaea HOM05D003314 ORTHO05D004164 5.5e-30 134.0 77 81.8
BcaB03g13407 Brassica carinata HOM05D003314 ORTHO05D004164 5.5e-30 134.0 77 79.2
A08p35790 Brassica napus HOM05D003314 ORTHO05D004164 5.5e-30 134.0 77 79.2
C08p02820 Brassica napus HOM05D003314 ORTHO05D004164 5.5e-30 134.0 77 79.2
BolC8t47077H Brassica oleracea HOM05D003314 ORTHO05D004164 5.5e-30 134.0 77 79.2
BraA08t35486Z Brassica rapa HOM05D003314 ORTHO05D004164 5.5e-30 134.0 77 79.2
Dinv28665 Davidia involucrata HOM05D003314 ORTHO05D004164 5.5e-30 134.0 77 83.1
AT1G07110 Arabidopsis thaliana HOM05D003314 ORTHO05D004164 7.2e-30 133.7 77 80.5
arahy.Tifrunner.gnm1.ann1.UVU1B7 Arachis hypogaea HOM05D003314 ORTHO05D004164 7.2e-30 133.7 77 80.5
BcaC07g42027 Brassica carinata HOM05D003314 ORTHO05D004164 7.2e-30 133.7 77 80.5
C08p50810 Brassica napus HOM05D003314 ORTHO05D004164 7.2e-30 133.7 77 80.5
BolC8t52609H Brassica oleracea HOM05D003314 ORTHO05D004164 7.2e-30 133.7 77 80.5
CSS0022626 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 7.2e-30 133.7 77 81.8
CSS0049027 Camellia sinensis var. sinensis HOM05D003314 ORTHO05D004164 7.2e-30 133.7 77 81.8
CANSAT54G2389 Cannabis sativa HOM05D003314 ORTHO05D004164 7.2e-30 133.7 77 84.4
CDE06G0062 Ceratophyllum demersum HOM05D003314 ORTHO05D004164 7.2e-30 133.7 77 81.8
FvH4_3g39080 Fragaria vesca HOM05D003314 ORTHO05D004164 7.2e-30 133.7 77 84.4
FAN21G3397 Fragaria x ananassa HOM05D003314 ORTHO05D004164 7.2e-30 133.7 77 84.4
Lj2A1086T64 Lonicera japonica HOM05D003314 ORTHO05D004164 7.2e-30 133.7 77 83.1
Oeu051518.1 Olea europaea HOM05D003314 ORTHO05D004164 9.4e-30 133.3 77 79.2
Lsat_1_v5_gn_9_19140 Lactuca sativa HOM05D003314 ORTHO05D004164 1.2e-29 132.9 75 85.3
Prupe.6G053800 Prunus persica HOM05D003314 ORTHO05D004164 1.2e-29 132.9 77 80.5
THA.LOC104815810 Tarenaya hassleriana HOM05D003314 ORTHO05D004164 2.1e-29 132.1 76 84.2
CARHR006800 Cardamine hirsuta HOM05D003314 ORTHO05D004164 2.7e-29 131.7 77 80.5
FAN25G2774 Fragaria x ananassa HOM05D003314 ORTHO05D004164 2.7e-29 131.7 77 83.1
ECA248G0301 Erigeron canadensis HOM05D003314 ORTHO05D004164 3.6e-29 131.3 74 83.8
Lsat_1_v5_gn_5_172641 Lactuca sativa HOM05D003314 ORTHO05D004164 3.6e-29 131.3 77 81.8
Zm00001eb282250 Zea mays HOM05D003314 ORTHO05D004164 3.6e-29 131.3 77 79.2
HanXRQChr08g0229151 Helianthus annuus HOM05D003314 ORTHO05D004164 4.7e-29 131.0 75 81.3
MD03G1064800 Malus domestica HOM05D003314 ORTHO05D004164 4.7e-29 131.0 75 81.3
unitig_60.g25552 Utricularia gibba HOM05D003314 ORTHO05D004164 6.1e-29 130.6 77 77.9
ECA247G1043 Erigeron canadensis HOM05D003314 ORTHO05D004164 1.4e-28 129.4 74 81.1
TWI31G0289 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 1.4e-28 129.4 77 81.8
AUR62041217 Chenopodium quinoa HOM05D003314 ORTHO05D004164 1.8e-28 129.0 77 79.2
Lalb_Chr17g0345221 Lupinus albus HOM05D003314 ORTHO05D004164 1.8e-28 129.0 74 85.1
C05p05170 Brassica napus HOM05D003314 ORTHO05D004164 2.3e-28 128.6 77 77.9
BolC5t29289H Brassica oleracea HOM05D003314 ORTHO05D004164 2.3e-28 128.6 77 77.9
BraA10t42824Z Brassica rapa HOM05D003314 ORTHO05D004164 2.3e-28 128.6 77 77.9
Sed0000995 Sechium edule HOM05D003314 ORTHO05D004164 2.3e-28 128.6 76 84.2
A10p05630 Brassica napus HOM05D003314 ORTHO05D004164 3.0e-28 128.3 77 77.9
Os03g0294200 Oryza sativa ssp. japonica HOM05D003314 ORTHO05D004164 4.0e-28 127.9 77 79.2
TWI79G1066 Tripterygium wilfordii HOM05D003314 ORTHO05D004164 6.7e-28 127.1 75 81.3
EL10Ac9g22391 Beta vulgaris HOM05D003314 ORTHO05D004164 1.2e-27 126.3 77 76.6
Lj1A130T38 Lonicera japonica HOM05D003314 ORTHO05D004164 2.0e-27 125.6 78 79.5
Glyma.11G172200 Glycine max HOM05D003314 ORTHO05D004164 2.6e-27 125.2 63 95.2
Pp3c16_2340 Physcomitrium patens HOM05D003314 ORTHO05D004164 9.7e-27 123.2 76 75.0
Mapoly0056s0097 Marchantia polymorpha HOM05D003314 ORTHO05D004164 2.2e-26 122.1 76 75.0
Pp3c25_1530 Physcomitrium patens HOM05D003314 ORTHO05D004164 2.8e-26 121.7 76 75.0
AagrBONN_evm.TU.Sc2ySwM_117.3149 Anthoceros agrestis HOM05D003314 ORTHO05D004164 4.8e-26 120.9 77 71.4
SMO174G0065 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 6.3e-26 120.6 75 72.0
vmacro02947 Vaccinium macrocarpon HOM05D003314 ORTHO05D004164 1.1e-25 119.8 104 60.6
Pp3c21_10950 Physcomitrium patens HOM05D003314 ORTHO05D004164 9.1e-25 116.7 76 75.0
SMO244G0010 Selaginella moellendorffii HOM05D003314 ORTHO05D004164 9.1e-25 116.7 76 71.1
SEGI_07736 Sequoiadendron giganteum HOM05D003314 ORTHO05D035932 7.7e-24 113.6 70 80.0
Pp3c19_20300 Physcomitrium patens HOM05D003314 ORTHO05D004164 1.1e-22 109.8 76 68.4
Ah.01g002410 Amaranthus hybridus HOM05D003314 ORTHO05D004164 3.0e-20 101.7 52 84.6
Cpa.g.sc2.427 Carica papaya HOM05D003314 ORTHO05D004164 6.3e-18 94.0 54 81.5
DCAR_007359 Daucus carota HOM05D003314 ORTHO05D004164 7.7e-16 87.0 77 59.7
AUR62025049 Chenopodium quinoa HOM05D003314 ORTHO05D004164 6.6e-15 84.0 77 58.4
Hund08127 Selenicereus undatus HOM05D003314 ORTHO05D004164 1.4e-12 76.3 47 78.7
Sp1g05820 Schrenkiella parvula HOM05D003314 ORTHO05D004164 2.3e-12 75.5 71 57.7
PRCOL_00004422 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 8.9e-12 73.6 53 64.2
Cre16.g691888 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 2.0e-11 72.4 80 46.2
Cfa025454 Carpinus fangiana HOM05D003314 ORTHO05D004164 4.4e-11 71.2 75 40.0
Cre16.g652150 Chlamydomonas reinhardtii HOM05D003314 ORTHO05D004164 2.2e-10 68.9 52 55.8
MCO01G554 Micromonas commoda HOM05D003314 ORTHO05D004164 9.2e-09 63.5 86 46.5
PRCOL_00005130 Prasinoderma coloniale HOM05D003314 ORTHO05D004164 5.9e-08 60.8 95 34.7
Haze_27150 Corylus avellana HOM05D003314 ORTHO05D004164 1.7e-07 59.3 71 40.8
PSO302G0047 Papaver somniferum HOM05D003314 ORTHO05D004164 5.0e-07 57.8 32 81.2


User provided reference genes

Program Settings