Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G186200 Glycine max HOM05D002965 ORTHO05D010536 4.4e-92 341.3 173 100.0
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 3.3e-39 165.6 172 55.8
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 3.3e-39 165.6 172 55.8
Aqoxy3G01134 Aquilegia oxysepala HOM05D002965 ORTHO05D010536 1.7e-38 163.3 171 56.1
Lj6A7T8 Lonicera japonica HOM05D002965 ORTHO05D010536 4.8e-38 161.8 174 54.6
BNapus_Darmor_BZH_scaffold_234p00050 Brassica napus HOM05D002965 ORTHO05D010536 7.2e-34 147.9 135 56.3
BolSC28t60357H Brassica oleracea HOM05D002965 ORTHO05D010536 7.2e-34 147.9 155 52.3
BraSC48t46254Z Brassica rapa HOM05D002965 ORTHO05D010536 7.2e-34 147.9 155 52.3
SabraMtG0009900 Salix brachista HOM05D002965 ORTHO05D010536 1.5e-31 140.2 156 51.9
ECA003G0005 Erigeron canadensis HOM05D002965 ORTHO05D000580 4.8e-30 135.2 168 48.8
ECA039G0005 Erigeron canadensis HOM05D002965 ORTHO05D010536 4.8e-30 135.2 168 48.8
AL3G44420 Arabidopsis lyrata HOM05D002965 ORTHO05D010536 6.3e-30 134.8 172 48.8
AT2G07674 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 6.3e-30 134.8 172 48.8
Solyc00g500226.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 8.2e-30 134.4 159 52.8
Solyc00g500262.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 8.2e-30 134.4 159 52.8
Solyc00g500351.1 Solanum lycopersicum HOM05D002965 ORTHO05D011254 8.2e-30 134.4 159 52.8
Sopen05g012840 Solanum pennellii HOM05D002965 ORTHO05D010183 8.2e-30 134.4 159 52.8
Solyc06g074585.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 1.8e-29 133.3 159 52.8
PGSC0003DMG400010573 Solanum tuberosum HOM05D002965 ORTHO05D010536 9.1e-29 131.0 159 51.6
PGR028G0005 Punica granatum HOM05D002965 ORTHO05D010536 4.5e-28 128.6 122 56.6
PGR069G0002 Punica granatum HOM05D002965 ORTHO05D010536 4.5e-28 128.6 122 56.6
PGR069G0012 Punica granatum HOM05D002965 ORTHO05D010536 4.5e-28 128.6 122 56.6
PGR069G0018 Punica granatum HOM05D002965 ORTHO05D010536 4.5e-28 128.6 122 56.6
PGR071G0002 Punica granatum HOM05D002965 ORTHO05D010536 4.5e-28 128.6 122 56.6
Solyc00g500114.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 4.5e-28 128.6 163 50.3
HanXRQMTg0579151 Helianthus annuus HOM05D002965 ORTHO05D010536 5.9e-28 128.3 163 46.6
Eucgr.I01860 Eucalyptus grandis HOM05D002965 ORTHO05D010536 2.9e-27 125.9 112 56.2
Ca_28560_v3 Cicer arietinum L. HOM05D002965 ORTHO05D010536 8.0e-25 117.9 124 51.6
Hma1.2p1_0290F.1_g114710 Hydrangea macrophylla HOM05D002965 ORTHO05D010536 8.0e-25 117.9 186 42.5
Hma1.2p1_0290F.1_g114715 Hydrangea macrophylla HOM05D002965 ORTHO05D010536 8.0e-25 117.9 186 42.5
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 4.0e-24 115.5 98 59.2
Aa31csc464G20 Aethionema arabicum HOM05D000743 ORTHO05D000580 2.0e-23 113.2 161 43.5
ATMG01010 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 2.0e-23 113.2 106 57.5
Psat0s4951g0200 Pisum sativum HOM05D002965 ORTHO05D010812 4.4e-23 112.1 132 49.2
HanXRQChr07g0188971 Helianthus annuus HOM05D002965 ORTHO05D010536 5.7e-23 111.7 163 43.6
CARHR283260 Cardamine hirsuta HOM05D002965 ORTHO05D010536 7.5e-23 111.3 106 55.7
Thhalv10023135m.g Eutrema salsugineum HOM05D002965 ORTHO05D010536 2.2e-22 109.8 111 52.3
Gorai.013G137600 Gossypium raimondii HOM05D002965 ORTHO05D010536 1.8e-21 106.7 147 49.0
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 2.4e-21 106.3 172 43.6
TPR.G28262 Trifolium pratense HOM05D002965 ORTHO05D010536 2.4e-21 106.3 125 48.0
PGR028G0001 Punica granatum HOM05D002864 ORTHO05D007972 3.8e-19 99.0 111 46.8
Sopen11g024950 Solanum pennellii HOM05D000004 ORTHO05D000002 1.6e-17 93.6 98 53.1
arahy.Tifrunner.gnm1.ann1.LH5L6M Arachis hypogaea HOM05D002965 ORTHO05D010536 3.6e-17 92.4 92 53.3
Gohir.D06G053851 Gossypium hirsutum HOM05D002965 ORTHO05D010536 4.0e-16 89.0 77 57.1
Lalb_Chr00c24g0406881 Lupinus albus HOM05D002965 ORTHO05D010536 2.6e-15 86.3 90 55.6
HanXRQChr07g0188961 Helianthus annuus HOM05D002965 ORTHO05D010536 7.5e-15 84.7 125 47.2
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 9.8e-15 84.3 70 60.0
Potri.007G062262 Populus trichocarpa HOM05D002965 ORTHO05D010536 9.8e-15 84.3 77 54.5
HanXRQChr07g0189021 Helianthus annuus HOM05D002965 ORTHO05D010536 1.7e-14 83.6 96 50.0
PGSC0003DMG400040498 Solanum tuberosum HOM05D002965 ORTHO05D010514 7.0e-13 78.2 109 49.5
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 1.6e-12 77.0 75 53.3
EL10Ac5g12181 Beta vulgaris HOM05D002965 ORTHO05D010536 2.0e-12 76.6 79 50.6
VMungo0251G1451 Vigna mungo HOM05D002965 ORTHO05D010536 2.7e-12 76.3 67 59.7
HanXRQChr10g0297161 Helianthus annuus HOM05D002965 ORTHO05D010536 4.5e-12 75.5 72 48.6
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 1.0e-11 74.3 69 59.4
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 2.9e-11 72.8 81 54.3
CAN.G362.38 Capsicum annuum HOM05D002965 ORTHO05D010994 2.9e-11 72.8 75 50.7
Solyc11g045430.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 1.1e-10 70.9 75 50.7
BcaC05g26887 Brassica carinata HOM05D002965 ORTHO05D010536 1.9e-10 70.1 58 56.9
Psat0s7112g0120 Pisum sativum HOM05D002965 ORTHO05D010536 3.2e-10 69.3 72 54.2
Aa31csc1081G40 Aethionema arabicum HOM05D002965 ORTHO05D010536 2.7e-09 66.2 56 57.1
HanXRQChr02g0035251 Helianthus annuus HOM05D002965 ORTHO05D010536 4.7e-09 65.5 65 53.8
arahy.Tifrunner.gnm1.ann1.S21A07 Arachis hypogaea HOM05D008923 ORTHO05D011423 1.8e-08 63.5 61 55.7
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.8e-08 63.5 46 63.0
BraSC77t46663Z Brassica rapa HOM05D002965 ORTHO05D010536 5.2e-08 62.0 52 55.8
Solyc00g025300.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 6.8e-08 61.6 48 62.5
Peaxi162Scf00348g00058 Petunia axillaris HOM05D002965 ORTHO05D010994 2.0e-07 60.1 56 55.4
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 9.8e-07 57.8 86 43.0
HanXRQChr11g0327841 Helianthus annuus HOM05D002965 ORTHO05D010536 2.2e-06 56.6 52 50.0
Nitab4.5_0002493g0010 Nicotiana tabacum HOM05D002965 ORTHO05D010536 2.8e-06 56.2 39 69.2


User provided reference genes

Program Settings