Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G186100 Glycine max HOM05D008204 ORTHO05D010378 1.6e-37 159.1 91 100.0
Lalb_Chr00c21g0405851 Lupinus albus HOM05D008204 ORTHO05D010378 2.1e-37 158.7 91 98.9
Lalb_Chr00c24g0407001 Lupinus albus HOM05D008204 ORTHO05D010378 2.1e-37 158.7 91 98.9
TPR.G39971 Trifolium pratense HOM05D008204 ORTHO05D010378 2.1e-37 158.7 91 98.9
ATMG00650 Arabidopsis thaliana HOM05D008204 ORTHO05D010378 4.0e-36 154.5 91 96.7
BraSC48t46233Z Brassica rapa HOM05D008204 ORTHO05D010378 4.0e-36 154.5 91 96.7
CARHR283010 Cardamine hirsuta HOM05D008204 ORTHO05D010378 4.0e-36 154.5 91 96.7
RcHm_v2.0_MTg0498341 Rosa chinensis HOM05D008204 ORTHO05D010378 6.9e-36 153.7 91 96.7
Nn1g09977 Nelumbo nucifera HOM05D008204 ORTHO05D010378 9.0e-36 153.3 90 96.7
Nn1g10041 Nelumbo nucifera HOM05D008204 ORTHO05D010378 9.0e-36 153.3 90 96.7
Thhalv10023053m.g Eutrema salsugineum HOM05D008204 ORTHO05D010378 1.2e-35 152.9 91 95.6
C01p34800 Brassica napus HOM05D008204 ORTHO05D010378 3.4e-35 151.4 91 94.5
BolC1t03448H Brassica oleracea HOM05D008204 ORTHO05D010378 3.4e-35 151.4 91 94.5
CAN.G2446.2 Capsicum annuum HOM05D008204 ORTHO05D010378 3.4e-35 151.4 91 95.6
CAN.G2792.2 Capsicum annuum HOM05D008204 ORTHO05D010378 3.4e-35 151.4 91 95.6
DCAR_032454 Daucus carota HOM05D008204 ORTHO05D010378 3.4e-35 151.4 91 95.6
HanXRQChr16g0504421 Helianthus annuus HOM05D008204 ORTHO05D010378 3.4e-35 151.4 91 95.6
HanXRQMTg0579141 Helianthus annuus HOM05D008204 ORTHO05D010378 3.4e-35 151.4 91 95.6
arahy.Tifrunner.gnm1.ann1.13YUNC Arachis hypogaea HOM05D008204 ORTHO05D010378 4.5e-35 151.0 85 97.6
arahy.Tifrunner.gnm1.ann1.CN6S56 Arachis hypogaea HOM05D008204 ORTHO05D010378 4.5e-35 151.0 85 97.6
arahy.Tifrunner.gnm1.ann1.TNUC9A Arachis hypogaea HOM05D008204 ORTHO05D010378 4.5e-35 151.0 85 97.6
arahy.Tifrunner.gnm1.ann1.4CE1ET Arachis hypogaea HOM05D008204 ORTHO05D010378 5.8e-35 150.6 84 98.8
LjContig00439g0017375 Lotus japonicus HOM05D008204 ORTHO05D010378 5.8e-35 150.6 84 98.8
Aqoxy1G02968 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 8.4e-34 146.7 85 96.5
Aqoxy23s009 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 8.4e-34 146.7 85 96.5
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.4e-33 146.0 85 95.3
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.4e-33 146.0 85 95.3
Aqoxy12s023 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 4.2e-33 144.4 84 96.4
Dinv06665 Davidia involucrata HOM05D008204 ORTHO05D010378 7.1e-33 143.7 85 94.1
Lsat_1_v5_gn_0_35040 Lactuca sativa HOM05D008204 ORTHO05D010378 9.3e-33 143.3 83 96.4
CDE02G0407 Ceratophyllum demersum HOM05D008466 ORTHO05D010817 1.0e-31 139.8 87 92.0
HanXRQChr07g0188981 Helianthus annuus HOM05D008204 ORTHO05D010378 2.3e-31 138.7 88 90.9
Potri.007G061661 Populus trichocarpa HOM05D008204 ORTHO05D010378 5.1e-31 137.5 91 89.0
Potri.007G062622 Populus trichocarpa HOM05D008204 ORTHO05D010378 5.1e-31 137.5 91 89.0
Gorai.001G160700 Gossypium raimondii HOM05D008204 ORTHO05D010378 8.7e-31 136.7 81 96.3
Nitab4.5_0012599g0060 Nicotiana tabacum HOM05D008204 ORTHO05D010378 1.5e-30 136.0 86 89.5
Nitab4.5_0010333g0030 Nicotiana tabacum HOM05D008204 ORTHO05D010378 1.9e-30 135.6 85 89.4
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 9.6e-30 133.3 87 87.4
Ah.10g028140 Amaranthus hybridus HOM05D008204 ORTHO05D010378 2.8e-29 131.7 84 90.5
BraSC48t46321Z Brassica rapa HOM05D008204 ORTHO05D010378 2.8e-29 131.7 78 96.2
CANSAT16G0035 Cannabis sativa HOM05D008204 ORTHO05D010378 8.2e-29 130.2 91 86.8
Sed0011989 Sechium edule HOM05D008204 ORTHO05D010378 8.2e-29 130.2 91 86.8
Sed0024014 Sechium edule HOM05D008204 ORTHO05D010378 8.2e-29 130.2 91 86.8
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.2e-27 126.3 74 95.9
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 1.2e-27 126.3 74 95.9
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 7.6e-27 123.6 72 95.8
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 7.6e-27 123.6 81 85.2
Lsat_1_v5_gn_5_43061 Lactuca sativa HOM05D008204 ORTHO05D010378 2.9e-26 121.7 70 95.7
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 2.9e-26 121.7 70 97.1
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 3.2e-25 118.2 70 94.3
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 2.7e-24 115.2 70 92.9
SHI54418 Sapria himalayana HOM05D008204 ORTHO05D010378 1.0e-23 113.2 71 93.0
SEGI_24171 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 3.9e-23 111.3 90 75.6
Aa31csc1168G40 Aethionema arabicum HOM05D008204 ORTHO05D010378 3.3e-22 108.2 64 95.3
HanXRQChr11g0327851 Helianthus annuus HOM05D008204 ORTHO05D010378 3.3e-22 108.2 69 91.3
SHI51809 Sapria himalayana HOM05D008204 ORTHO05D010378 9.7e-22 106.7 62 96.8
SHI41393 Sapria himalayana HOM05D008204 ORTHO05D010378 1.4e-20 102.8 63 90.5
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 9.0e-20 100.1 63 90.5
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 5.5e-17 90.9 67 80.6
HanXRQChr07g0189011 Helianthus annuus HOM05D008204 ORTHO05D010378 1.6e-16 89.4 54 92.6
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 3.9e-15 84.7 63 82.5
PSO764G0230 Papaver somniferum HOM05D017042 ORTHO05D018469 1.9e-14 82.4 55 81.8
unitig_87.g27951 Utricularia gibba HOM05D008204 ORTHO05D010378 2.8e-13 78.6 45 95.6
BraSC54t46364Z Brassica rapa HOM05D008204 ORTHO05D010378 4.8e-13 77.8 46 93.5
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 6.3e-13 77.4 45 93.3
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 6.3e-13 77.4 45 93.3
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.2e-11 73.2 54 77.8
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 6.5e-10 67.4 50 78.0
SEGI_26273 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 3.2e-09 65.1 57 71.9
Mapoly0002s0163 Marchantia polymorpha HOM05D008204 ORTHO05D010378 5.5e-09 64.3 45 80.0
C02p41480 Brassica napus HOM05D008204 ORTHO05D010378 3.6e-08 61.6 71 60.6
BolC2t10165H Brassica oleracea HOM05D008204 ORTHO05D010378 3.6e-08 61.6 71 60.6
Nitab4.5_0000172g1780 Nicotiana tabacum HOM05D008204 ORTHO05D010378 3.6e-08 61.6 43 83.7
SHI07475 Sapria himalayana HOM05D008204 ORTHO05D010378 1.8e-07 59.3 70 55.7
Nitab4.5_0000172g2070 Nicotiana tabacum HOM05D008204 ORTHO05D010378 2.0e-06 55.8 32 90.6
BraA02t07598Z Brassica rapa HOM05D008204 ORTHO05D010378 7.4e-06 53.9 38 76.3
Nitab4.5_0001152g0280 Nicotiana tabacum HOM05D008204 ORTHO05D016167 7.4e-06 53.9 37 81.1


User provided reference genes

Program Settings