Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G182300 Glycine max HOM05D002582 ORTHO05D002781 5.2e-87 324.3 161 100.0
Glyma.08G202800 Glycine max HOM05D002582 ORTHO05D002781 4.3e-73 278.1 140 98.6
Glyma.07G017600 Glycine max HOM05D002582 ORTHO05D002781 7.3e-65 250.8 140 89.3
Phvul.010G146900 Phaseolus vulgaris HOM05D002582 ORTHO05D002781 5.4e-60 234.6 140 80.0
VMungo0331G0629 Vigna mungo HOM05D002582 ORTHO05D002781 6.2e-56 221.1 140 77.1
Lj3g0024380 Lotus japonicus HOM05D002582 ORTHO05D002781 1.3e-50 203.4 140 71.4
arahy.Tifrunner.gnm1.ann1.YXQT7A Arachis hypogaea HOM05D002582 ORTHO05D002781 4.0e-39 165.2 141 61.7
arahy.Tifrunner.gnm1.ann1.Z587I1 Arachis hypogaea HOM05D002582 ORTHO05D002781 1.3e-37 160.2 141 59.6
Ciclev10025016m.g Citrus clementina HOM05D002582 ORTHO05D002781 1.4e-23 113.6 140 45.0
Potri.001G187100 Populus trichocarpa HOM05D002582 ORTHO05D002781 4.1e-23 112.1 142 44.4
Manes.11G036100 Manihot esculenta HOM05D002582 ORTHO05D002781 1.5e-22 110.2 133 47.4
Sabra01G0153200 Salix brachista HOM05D002582 ORTHO05D002781 2.0e-22 109.8 132 47.0
Prupe.3G063100 Prunus persica HOM05D002582 ORTHO05D002781 4.5e-22 108.6 141 46.1
COL.COLO4_30475 Corchorus olitorius HOM05D002582 ORTHO05D002781 1.0e-21 107.5 133 43.6
Thecc.06G096100 Theobroma cacao HOM05D002582 ORTHO05D002781 8.5e-21 104.4 142 41.5
Dinv30460 Davidia involucrata HOM05D002582 ORTHO05D002781 1.1e-20 104.0 130 46.2
Atru.chr1.3465 Acer truncatum HOM05D002582 ORTHO05D002781 1.9e-20 103.2 133 42.9
Hma1.2p1_1689F.1_g297660 Hydrangea macrophylla HOM05D002582 ORTHO05D002781 7.2e-20 101.3 127 47.2
Haze_16333 Corylus avellana HOM05D002582 ORTHO05D002781 1.2e-19 100.5 81 61.7
Gohir.A05G128100 Gossypium hirsutum HOM05D002582 ORTHO05D002781 6.1e-19 98.2 121 43.8
COL.COLO4_28368 Corchorus olitorius HOM05D002582 ORTHO05D002781 7.9e-19 97.8 102 51.0
MD17G1187700 Malus domestica HOM05D002582 ORTHO05D002781 1.0e-18 97.4 141 43.3
CANSAT56G2264 Cannabis sativa HOM05D002582 ORTHO05D002781 3.9e-18 95.5 140 38.6
Gorai.009G136300 Gossypium raimondii HOM05D002582 ORTHO05D002781 3.9e-18 95.5 121 42.1
MD09G1207000 Malus domestica HOM05D002582 ORTHO05D002781 5.1e-18 95.1 144 41.0
Gohir.D05G132600 Gossypium hirsutum HOM05D002582 ORTHO05D002781 1.1e-17 94.0 121 42.1
RcHm_v2.0_Chr2g0139611 Rosa chinensis HOM05D002582 ORTHO05D002781 1.1e-17 94.0 128 44.5
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.7e-16 90.1 129 42.6
Solyc06g066550.3 Solanum lycopersicum HOM05D002582 ORTHO05D002781 1.7e-16 90.1 109 42.2
Sopen06g024820 Solanum pennellii HOM05D002582 ORTHO05D002781 1.7e-16 90.1 109 42.2
FvH4_6g32010 Fragaria vesca HOM05D002582 ORTHO05D002781 4.8e-16 88.6 125 42.4
PGR142G1576 Punica granatum HOM05D002582 ORTHO05D002781 8.2e-16 87.8 133 40.6
PGSC0003DMG400016500 Solanum tuberosum HOM05D002582 ORTHO05D002781 1.1e-15 87.4 102 43.1
TWI12G1196 Tripterygium wilfordii HOM05D002582 ORTHO05D002781 1.8e-15 86.7 164 36.0
GSVIVG01017037001 Vitis vinifera HOM05D002582 ORTHO05D002781 1.8e-15 86.7 94 47.9
CAN.G1152.15 Capsicum annuum HOM05D002582 ORTHO05D002781 4.1e-15 85.5 130 36.2
Cfa002116 Carpinus fangiana HOM05D002582 ORTHO05D002781 4.1e-15 85.5 89 53.9
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 5.3e-15 85.1 101 48.5
Lj9C510G21 Lonicera japonica HOM05D002582 ORTHO05D002781 6.9e-15 84.7 129 36.4
Peaxi162Scf00207g01237 Petunia axillaris HOM05D002582 ORTHO05D002781 6.9e-15 84.7 129 38.0
GSVIVG01034251001 Vitis vinifera HOM05D002582 ORTHO05D002781 1.2e-14 84.0 94 46.8
ECA234G2361 Erigeron canadensis HOM05D002582 ORTHO05D002781 5.9e-14 81.6 130 36.2
Actinidia32708 Actinidia chinensis HOM05D002582 ORTHO05D002781 1.0e-13 80.9 81 46.9
Cc04_g02790 Coffea canephora HOM05D002582 ORTHO05D002781 2.2e-13 79.7 102 40.2
Eucgr.F03057 Eucalyptus grandis HOM05D002582 ORTHO05D002781 2.2e-13 79.7 81 49.4
Oeu024078.1 Olea europaea HOM05D002582 ORTHO05D002781 2.2e-13 79.7 130 34.6
GSVIVG01016964001 Vitis vinifera HOM05D002582 ORTHO05D002781 5.0e-13 78.6 97 44.3
ATR0705G167 Amborella trichopoda HOM05D002582 ORTHO05D002781 8.5e-13 77.8 103 42.7
MBI04_g27070_MAGBIO Magnolia biondii HOM05D002582 ORTHO05D002781 1.4e-12 77.0 78 48.7
Aqoxy7G01496 Aquilegia oxysepala HOM05D002582 ORTHO05D002781 1.9e-12 76.6 127 39.4
Lsat_1_v5_gn_5_134580 Lactuca sativa HOM05D002582 ORTHO05D002781 1.9e-12 76.6 138 31.2
Migut.I00925 Erythranthe guttata HOM05D002582 ORTHO05D002781 2.5e-12 76.3 80 45.0
MSTRG.22653 Avicennia marina HOM05D002582 ORTHO05D002781 4.2e-12 75.5 100 39.0
HanXRQChr10g0313561 Helianthus annuus HOM05D002582 ORTHO05D002781 1.2e-11 73.9 86 41.9
Nitab4.5_0000983g0070 Nicotiana tabacum HOM05D002582 ORTHO05D002781 1.2e-11 73.9 136 34.6
SalBow2G1930 Salvia bowleyana HOM05D002582 ORTHO05D002781 1.6e-11 73.6 75 46.7
Nitab4.5_0006203g0010 Nicotiana tabacum HOM05D002582 ORTHO05D002781 1.0e-10 70.9 137 34.3
TAR624G0959 Trochodendron aralioides HOM05D002582 ORTHO05D002781 1.0e-10 70.9 131 35.9
DCAR_007577 Daucus carota HOM05D002582 ORTHO05D002781 1.4e-10 70.5 83 41.0
Duzib235G0796 Durio zibethinus HOM05D002582 ORTHO05D002781 1.4e-10 70.5 59 54.2
SalBow7G2403 Salvia bowleyana HOM05D002582 ORTHO05D002781 1.5e-09 67.0 81 38.3
ECA232G4223 Erigeron canadensis HOM05D002582 ORTHO05D002781 2.6e-09 66.2 110 39.1
Carub.0003s1088 Capsella rubella HOM05D002582 ORTHO05D002781 9.7e-09 64.3 78 42.3
Thhalv10020029m.g Eutrema salsugineum HOM05D002582 ORTHO05D002781 9.7e-09 64.3 78 42.3
Aa31sc2197G10 Aethionema arabicum HOM05D002582 ORTHO05D002781 1.3e-08 63.9 79 43.0
Cpa.g.sc104.87 Carica papaya HOM05D002582 ORTHO05D002781 1.7e-08 63.5 79 39.2
FAN09G2133 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.7e-08 63.5 75 49.3
TAR623G1676 Trochodendron aralioides HOM05D002582 ORTHO05D002781 2.8e-08 62.8 79 39.2
Aa31LG3G4950 Aethionema arabicum HOM05D002582 ORTHO05D002781 6.3e-08 61.6 75 41.3
Lsat_1_v5_gn_4_100740 Lactuca sativa HOM05D002582 ORTHO05D002781 8.2e-08 61.2 63 47.6
AT3G11560 Arabidopsis thaliana HOM05D002582 ORTHO05D002781 1.1e-07 60.8 78 39.7
THA.LOC104816603 Tarenaya hassleriana HOM05D002582 ORTHO05D002781 1.1e-07 60.8 78 39.7
TAR369G0677 Trochodendron aralioides HOM05D002582 ORTHO05D002781 1.1e-07 60.8 75 42.7
Sed0021820 Sechium edule HOM05D002582 ORTHO05D002781 1.4e-07 60.5 75 38.7
AL3G23110 Arabidopsis lyrata HOM05D002582 ORTHO05D002781 1.8e-07 60.1 79 40.5
A05p37770 Brassica napus HOM05D002582 ORTHO05D002781 1.8e-07 60.1 149 28.2
BraA05t22572Z Brassica rapa HOM05D002582 ORTHO05D002781 1.8e-07 60.1 149 28.2
PGR004G1279 Punica granatum HOM05D002582 ORTHO05D002781 1.8e-07 60.1 74 40.5
EL10Ac7g16845 Beta vulgaris HOM05D002582 ORTHO05D002781 2.4e-07 59.7 77 41.6
Sp3g09800 Schrenkiella parvula HOM05D002582 ORTHO05D002781 2.4e-07 59.7 78 39.7
Carub.0006s0509 Capsella rubella HOM05D002582 ORTHO05D002781 3.1e-07 59.3 79 39.2
ClCG04G010240 Citrullus lanatus HOM05D002582 ORTHO05D002781 5.3e-07 58.5 75 37.3
BcaB01g05735 Brassica carinata HOM05D002582 ORTHO05D002781 7.0e-07 58.2 75 40.0
AL6G16220 Arabidopsis lyrata HOM05D002582 ORTHO05D002781 9.1e-07 57.8 75 40.0
BcaB06g25608 Brassica carinata HOM05D002582 ORTHO05D002781 9.1e-07 57.8 110 32.7
C05p56390 Brassica napus HOM05D002582 ORTHO05D002781 9.1e-07 57.8 110 32.7
BolC5t34306H Brassica oleracea HOM05D002582 ORTHO05D002781 9.1e-07 57.8 110 32.7
CAN.G397.91 Capsicum annuum HOM05D002582 ORTHO05D002781 9.1e-07 57.8 75 40.0
CiPaw.10G012900 Carya illinoinensis HOM05D002582 ORTHO05D002781 9.1e-07 57.8 75 37.3
MELO3C024566.2 Cucumis melo HOM05D002582 ORTHO05D002781 9.1e-07 57.8 75 37.3
Peaxi162Scf00013g01411 Petunia axillaris HOM05D002582 ORTHO05D002781 9.1e-07 57.8 105 34.3
Potri.016G074900 Populus trichocarpa HOM05D002582 ORTHO05D002781 9.1e-07 57.8 78 38.5
Solyc09g010280.3 Solanum lycopersicum HOM05D002582 ORTHO05D002781 9.1e-07 57.8 75 40.0
Sopen09g004980 Solanum pennellii HOM05D002582 ORTHO05D002781 9.1e-07 57.8 75 40.0
CsaV3_6G040880 Cucumis sativus L. HOM05D002582 ORTHO05D002781 1.2e-06 57.4 75 37.3
FvH4_6g19540 Fragaria vesca HOM05D002582 ORTHO05D002781 1.2e-06 57.4 75 41.3
FAN02G2142 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.2e-06 57.4 75 41.3
FAN09G2395 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.2e-06 57.4 75 41.3
FAN14G0204 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.2e-06 57.4 75 41.3
RcHm_v2.0_Chr3g0474881 Rosa chinensis HOM05D002582 ORTHO05D002781 1.2e-06 57.4 75 41.3
Ca_09028_v3 Cicer arietinum L. HOM05D002582 ORTHO05D002781 1.6e-06 57.0 74 40.5
Cc06_g06230 Coffea canephora HOM05D002582 ORTHO05D002781 1.6e-06 57.0 75 40.0
Dinv31725 Davidia involucrata HOM05D002582 ORTHO05D002781 1.6e-06 57.0 75 40.0
Nitab4.5_0000573g0120 Nicotiana tabacum HOM05D002582 ORTHO05D002781 1.6e-06 57.0 75 40.0
Aqoxy2G01049 Aquilegia oxysepala HOM05D002582 ORTHO05D002781 2.0e-06 56.6 75 40.0
BcaB01g05984 Brassica carinata HOM05D002582 ORTHO05D002781 2.0e-06 56.6 75 38.7
BcaC05g29355 Brassica carinata HOM05D002582 ORTHO05D002781 2.0e-06 56.6 110 32.7
A03p02620 Brassica napus HOM05D002582 ORTHO05D002781 2.0e-06 56.6 75 38.7
C03p03010 Brassica napus HOM05D002582 ORTHO05D002781 2.0e-06 56.6 75 38.7
BolC3t12851H Brassica oleracea HOM05D002582 ORTHO05D002781 2.0e-06 56.6 75 38.7
BraA03t09623Z Brassica rapa HOM05D002582 ORTHO05D002781 2.0e-06 56.6 75 38.7
Duzib093G1566 Durio zibethinus HOM05D002582 ORTHO05D002781 2.0e-06 56.6 114 33.3
Phvul.007G230450 Phaseolus vulgaris HOM05D002582 ORTHO05D002781 2.0e-06 56.6 75 34.7
Cfa016652 Carpinus fangiana HOM05D002582 ORTHO05D002781 2.6e-06 56.2 75 36.0
Ciclev10011033m.g Citrus clementina HOM05D002582 ORTHO05D002781 2.6e-06 56.2 75 37.3
Haze_19658 Corylus avellana HOM05D002582 ORTHO05D002781 2.6e-06 56.2 75 36.0
Gohir.A04G059778 Gossypium hirsutum HOM05D002582 ORTHO05D002781 2.6e-06 56.2 75 38.7
MD12G1031800 Malus domestica HOM05D002582 ORTHO05D002781 2.6e-06 56.2 104 30.8
CDE04G1506 Ceratophyllum demersum HOM05D002582 ORTHO05D002781 3.5e-06 55.8 112 29.5
Glyma.02G200700 Glycine max HOM05D002582 ORTHO05D002781 3.5e-06 55.8 75 37.3
Gohir.D04G096400 Gossypium hirsutum HOM05D002582 ORTHO05D002781 3.5e-06 55.8 107 32.7
Gorai.009G399100 Gossypium raimondii HOM05D002582 ORTHO05D002781 3.5e-06 55.8 107 32.7
HPP92_013111 Vanilla planifolia HOM05D002582 ORTHO05D002781 3.5e-06 55.8 66 39.4
HPP92_013132 Vanilla planifolia HOM05D002582 ORTHO05D002781 3.5e-06 55.8 66 39.4
AUR62006244 Chenopodium quinoa HOM05D002582 ORTHO05D002781 4.5e-06 55.5 75 40.0
AUR62028482 Chenopodium quinoa HOM05D002582 ORTHO05D002781 4.5e-06 55.5 75 40.0
COL.COLO4_29664 Corchorus olitorius HOM05D002582 ORTHO05D002781 4.5e-06 55.5 123 30.1
FAN05G0212 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.5e-06 55.5 75 40.0
FAN05G2352 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.5e-06 55.5 75 40.0
Sabra16G0077500 Salix brachista HOM05D002582 ORTHO05D002781 4.5e-06 55.5 78 37.2
Ah.08g210320 Amaranthus hybridus HOM05D002582 ORTHO05D002781 5.9e-06 55.1 77 37.7
Rhsim01G0258700 Rhododendron simsii HOM05D002582 ORTHO05D002781 5.9e-06 55.1 74 39.2
GSVIVG01033899001 Vitis vinifera HOM05D002582 ORTHO05D002781 5.9e-06 55.1 104 29.8
AT5G06220 Arabidopsis thaliana HOM05D002582 ORTHO05D002781 7.7e-06 54.7 75 37.3
BcaC06g32587 Brassica carinata HOM05D002582 ORTHO05D002781 7.7e-06 54.7 66 40.9
CARHR206920 Cardamine hirsuta HOM05D002582 ORTHO05D002781 7.7e-06 54.7 75 36.0
Thhalv10012627m.g Eutrema salsugineum HOM05D002582 ORTHO05D002781 7.7e-06 54.7 75 37.3
Glyma.10G075900 Glycine max HOM05D002582 ORTHO05D002781 7.7e-06 54.7 75 36.0


User provided reference genes

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