Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 2.5e-124 448.7 219 100.0
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 2.6e-121 438.7 219 97.7
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 4.4e-121 438.0 219 98.6
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.4e-119 432.2 219 95.4
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 2.0e-118 429.1 219 93.6
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 4.6e-118 427.9 219 94.1
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 5.9e-118 427.6 219 95.0
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 3.9e-117 424.9 219 94.1
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 1.1e-116 423.3 219 92.2
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.0e-109 400.2 220 88.2
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 6.6e-109 397.5 219 84.9
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 9.5e-108 393.7 220 86.8
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 1.4e-106 389.8 220 86.4
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 4.0e-106 388.3 220 86.4
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 4.0e-106 388.3 221 86.9
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 1.2e-105 386.7 220 85.5
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 2.6e-105 385.6 221 85.1
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.6e-105 385.6 221 85.1
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.4e-105 385.2 221 85.1
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 5.8e-105 384.4 219 82.2
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 7.5e-105 384.0 220 85.5
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 9.8e-105 383.6 220 85.9
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 9.8e-105 383.6 220 85.0
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 1.3e-104 383.3 219 84.0
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.3e-104 383.3 220 85.5
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.7e-104 382.9 221 84.6
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.2e-104 382.5 193 94.8
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 2.2e-104 382.5 219 83.6
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 2.9e-104 382.1 220 84.5
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 4.9e-104 381.3 220 84.1
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 8.3e-104 380.6 219 83.6
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.1e-103 380.2 221 84.2
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.9e-103 379.4 222 84.2
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 2.4e-103 379.0 220 84.1
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 4.1e-103 378.3 220 84.5
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 7.1e-103 377.5 220 85.0
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 9.2e-103 377.1 220 85.9
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 1.2e-102 376.7 220 82.7
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 6.0e-102 374.4 219 80.4
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 6.0e-102 374.4 220 82.7
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.7e-101 372.9 220 83.2
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 2.3e-101 372.5 221 81.9
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.3e-101 372.5 220 81.4
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 3.9e-101 371.7 221 81.9
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 5.1e-101 371.3 220 81.4
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 8.6e-101 370.5 221 81.4
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.5e-100 369.8 220 82.3
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 1.9e-100 369.4 220 82.3
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 2.5e-100 369.0 238 78.2
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 2.5e-100 369.0 220 82.3
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 5.6e-100 367.9 220 80.5
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 7.3e-100 367.5 220 80.5
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.8e-98 362.8 219 79.5
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 8.9e-98 360.5 220 80.5
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 4.4e-97 358.2 219 77.6
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 7.6e-97 357.5 221 77.4
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 7.6e-97 357.5 220 80.9
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.3e-96 356.7 220 80.5
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.3e-96 356.7 219 78.5
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 1.3e-96 356.7 219 78.5
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.9e-96 355.5 196 87.8
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 6.4e-96 354.4 220 78.6
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.9e-95 352.8 220 80.5
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 1.9e-95 352.8 222 78.8
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 2.1e-94 349.4 319 60.8
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 4.6e-94 348.2 229 76.4
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 4.6e-94 348.2 199 84.9
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 7.8e-94 347.4 220 78.2
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 1.0e-93 347.1 232 73.7
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 3.0e-93 345.5 220 77.7
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 5.1e-93 344.7 220 76.8
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 1.1e-92 343.6 220 76.8
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 1.1e-92 343.6 221 77.4
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 4.3e-92 341.7 221 76.9
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 9.6e-92 340.5 220 77.3
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 1.1e-90 337.0 220 75.9
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.1e-90 335.5 193 83.4
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 3.1e-90 335.5 194 83.5
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 5.2e-90 334.7 221 75.1
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 6.8e-90 334.3 194 82.5
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.0e-89 332.8 194 82.0
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 9.9e-89 330.5 198 81.8
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 9.9e-89 330.5 300 60.7
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.8e-88 328.6 198 79.8
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.8e-88 328.6 195 80.5
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 4.9e-88 328.2 210 76.7
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.4e-87 326.6 194 80.9
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 1.9e-87 326.2 212 75.9
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 3.2e-87 325.5 222 74.8
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 3.2e-87 325.5 222 74.8
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 7.1e-87 324.3 220 71.8
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 9.3e-87 323.9 221 71.5
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 4.6e-86 321.6 223 73.1
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 6.0e-86 321.2 194 79.9
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 1.0e-85 320.5 221 72.4
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 1.3e-85 320.1 221 72.9
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 1.9e-84 316.2 221 72.4
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 1.9e-84 316.2 221 72.4
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 9.6e-84 313.9 221 71.9
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 9.6e-84 313.9 221 70.6
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 9.6e-84 313.9 221 70.6
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 2.8e-83 312.4 221 72.4
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 2.8e-83 312.4 221 71.5
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.8e-83 312.4 221 73.3
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 2.8e-83 312.4 194 78.9
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 8.1e-83 310.8 204 74.0
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.8e-82 309.7 289 59.5
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 1.3e-80 303.5 192 74.0
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.3e-80 303.5 197 76.6
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 1.7e-80 303.1 183 80.9
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 6.4e-80 301.2 222 66.2
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 8.4e-80 300.8 157 91.7
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 1.7e-77 293.1 210 71.0
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 8.7e-77 290.8 213 65.3
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 1.9e-76 289.7 213 65.7
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 5.6e-76 288.1 219 62.1
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 1.4e-74 283.5 162 87.0
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 5.3e-74 281.6 169 82.2
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 4.5e-73 278.5 179 77.7
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 7.6e-73 277.7 172 77.3
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.3e-72 276.9 219 61.6
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 9.3e-71 270.8 223 63.2
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 9.3e-71 270.8 223 63.2
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 3.5e-70 268.9 221 59.3
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 3.0e-69 265.8 218 63.3
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 5.6e-68 261.5 219 60.7
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.4e-66 256.1 168 72.6
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.0e-65 253.1 195 68.7
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.6e-65 252.7 195 61.5
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 5.5e-63 245.0 219 53.0
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 3.9e-61 238.8 194 61.3
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 6.7e-61 238.0 222 53.6
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 3.2e-55 219.2 182 62.6
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 1.3e-53 213.8 161 64.6
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 3.2e-47 192.6 219 45.7
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 9.4e-47 191.0 151 60.9
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 9.4e-47 191.0 99 92.9
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 2.7e-46 189.5 93 94.6
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 1.6e-38 163.7 221 38.9
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.8e-37 160.2 248 41.9
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 1.3e-35 154.1 243 37.4
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 1.3e-32 144.1 222 39.6
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 8.5e-32 141.4 84 81.0
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 2.1e-30 136.7 84 75.0
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 7.5e-28 128.3 140 48.6
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 7.7e-25 118.2 92 63.0
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 6.8e-21 105.1 82 69.5
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 1.5e-12 77.4 142 39.4
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.8e-10 70.5 204 26.0
unitig_899.g14971 Utricularia gibba HOM05D000351 ORTHO05D006179 3.6e-06 56.2 37 64.9


User provided reference genes

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