Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G176500 Glycine max HOM05D007434 ORTHO05D009541 1.6e-42 175.6 87 100.0
Glyma.05G083900 Glycine max HOM05D007434 ORTHO05D009541 1.1e-38 162.9 87 93.1
Phvul.003G245601 Phaseolus vulgaris HOM05D007434 ORTHO05D009541 5.2e-33 144.1 90 80.0
TPR.G19007 Trifolium pratense HOM05D007434 ORTHO05D009541 4.3e-19 97.8 87 58.6
Lj4g0023681 Lotus japonicus HOM05D007434 ORTHO05D009541 9.5e-19 96.7 104 55.8
Lalb_Chr05g0213221 Lupinus albus HOM05D007434 ORTHO05D009541 4.7e-18 94.4 95 54.7
Lalb_Chr16g0378251 Lupinus albus HOM05D007434 ORTHO05D009541 8.9e-17 90.1 103 51.5
Lalb_Chr16g0378431 Lupinus albus HOM05D007434 ORTHO05D009541 8.9e-17 90.1 103 51.5
Glyma.01G184800 Glycine max HOM05D007434 ORTHO05D009541 2.2e-15 85.5 101 52.5
Lj2g0001941 Lotus japonicus HOM05D007434 ORTHO05D009541 2.2e-15 85.5 90 51.1
Glyma.11G057400 Glycine max HOM05D007434 ORTHO05D009541 4.9e-15 84.3 98 53.1
Potri.007G041400 Populus trichocarpa HOM05D007434 ORTHO05D009541 9.2e-14 80.1 93 49.5
FvH4_1g15720 Fragaria vesca HOM05D007434 ORTHO05D009541 1.5e-11 72.8 79 48.1
FAN19G1812 Fragaria x ananassa HOM05D007434 ORTHO05D019139 1.5e-11 72.8 79 48.1
Atru.chr3.395 Acer truncatum HOM05D007434 ORTHO05D013638 1.9e-11 72.4 94 52.1
FAN26G1295 Fragaria x ananassa HOM05D007434 ORTHO05D019139 7.3e-11 70.5 87 44.8
FAN28G0171 Fragaria x ananassa HOM05D007434 ORTHO05D009541 7.3e-11 70.5 87 44.8
CiPaw.01G021300 Carya illinoinensis HOM05D007434 ORTHO05D009541 1.3e-10 69.7 79 49.4
COL.COLO4_11385 Corchorus olitorius HOM05D007434 ORTHO05D009541 1.3e-10 69.7 95 47.4
Manes.13G126300 Manihot esculenta HOM05D007434 ORTHO05D009541 3.6e-10 68.2 82 50.0
Thecc.01G053200 Theobroma cacao HOM05D007434 ORTHO05D009541 3.6e-10 68.2 97 44.3
Manes.12G100300 Manihot esculenta HOM05D007434 ORTHO05D009541 4.8e-10 67.8 83 50.6
QL06p042201 Quercus lobata HOM05D007434 ORTHO05D009541 4.8e-10 67.8 83 47.0
Oeu050758.1 Olea europaea HOM05D007434 ORTHO05D009541 8.1e-10 67.0 79 44.3
DCAR_025721 Daucus carota HOM05D007434 ORTHO05D009541 1.2e-08 63.2 84 35.7
Sed0004872 Sechium edule HOM05D007434 ORTHO05D009541 2.0e-08 62.4 81 44.4
Lj4g0021906 Lotus japonicus HOM05D007434 ORTHO05D009541 2.6e-08 62.0 75 42.7
Sed0002185 Sechium edule HOM05D007434 ORTHO05D009541 9.9e-08 60.1 88 44.3
TPR.G19016 Trifolium pratense HOM05D007434 ORTHO05D009541 9.9e-08 60.1 97 43.3
VMungo1083G0001 Vigna mungo HOM05D007434 ORTHO05D009541 9.9e-08 60.1 83 39.8
Prupe.7G136100 Prunus persica HOM05D007434 ORTHO05D013638 1.3e-07 59.7 87 44.8
ClCG01G016720 Citrullus lanatus HOM05D007434 ORTHO05D009541 1.7e-07 59.3 83 41.0
ClCG01G016730 Citrullus lanatus HOM05D007434 ORTHO05D009541 2.2e-07 58.9 89 40.4
QL06p042177 Quercus lobata HOM05D007434 ORTHO05D009541 3.8e-07 58.2 80 42.5
CsaV3_6G043140 Cucumis sativus L. HOM05D007434 ORTHO05D009541 4.9e-07 57.8 91 39.6
Sed0015330 Sechium edule HOM05D007434 ORTHO05D009541 4.9e-07 57.8 86 43.0
MELO3C007552.2 Cucumis melo HOM05D007434 ORTHO05D009541 6.4e-07 57.4 83 39.8
Lalb_Chr09g0333721 Lupinus albus HOM05D007434 ORTHO05D009541 6.4e-07 57.4 89 39.3
Gorai.007G211200 Gossypium raimondii HOM05D007434 ORTHO05D009541 8.4e-07 57.0 98 38.8
arahy.Tifrunner.gnm1.ann1.68HAUH Arachis hypogaea HOM05D048825 ORTHO05D009541 1.1e-06 56.6 79 44.3
Ciclev10027212m.g Citrus clementina HOM05D007434 ORTHO05D009541 1.1e-06 56.6 83 44.6
Gohir.A11G190600 Gossypium hirsutum HOM05D007434 ORTHO05D009541 1.1e-06 56.6 98 39.8
Gohir.D11G197400 Gossypium hirsutum HOM05D007434 ORTHO05D009541 1.1e-06 56.6 98 37.8
arahy.Tifrunner.gnm1.ann1.M8F4SW Arachis hypogaea HOM05D048825 ORTHO05D009541 1.9e-06 55.8 79 44.3
Nn1g05850 Nelumbo nucifera HOM05D007434 ORTHO05D009541 2.4e-06 55.5 96 36.5
Sabra07G0037000 Salix brachista HOM05D014707 ORTHO05D009541 2.4e-06 55.5 80 41.2
Atru.chr3.394 Acer truncatum HOM05D007434 ORTHO05D009541 3.2e-06 55.1 82 37.8
Cpa.g.sc55.177 Carica papaya HOM05D007434 ORTHO05D009541 3.2e-06 55.1 106 40.6
Medtr5g017710 Medicago truncatula HOM05D007434 ORTHO05D009541 3.2e-06 55.1 78 39.7
Cfa003999 Carpinus fangiana HOM05D017207 ORTHO05D010689 4.2e-06 54.7 85 41.2
Gohir.A11G046200 Gossypium hirsutum HOM05D007434 ORTHO05D009541 4.2e-06 54.7 89 37.1
Lalb_Chr05g0226641 Lupinus albus HOM05D007434 ORTHO05D009541 4.2e-06 54.7 81 39.5
Prupe.7G136000 Prunus persica HOM05D007434 ORTHO05D009541 4.2e-06 54.7 88 36.4
Lalb_Chr05g0213231 Lupinus albus HOM05D007434 ORTHO05D009541 5.4e-06 54.3 75 38.7
Lsat_1_v5_gn_4_167700 Lactuca sativa HOM05D007434 ORTHO05D009541 7.1e-06 53.9 76 39.5
Rhsim08G0102100 Rhododendron simsii HOM05D007434 ORTHO05D009541 9.3e-06 53.5 89 41.6


User provided reference genes

Program Settings