Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G175900 Glycine max HOM05D005929 ORTHO05D007869 0.0e+00 1357.4 711 100.0
Glyma.05G084300 Glycine max HOM05D005929 ORTHO05D007869 0.0e+00 1284.2 709 94.5
VMungo0251G2155 Vigna mungo HOM05D005929 ORTHO05D007869 0.0e+00 1263.8 711 91.6
Phvul.003G244900 Phaseolus vulgaris HOM05D005929 ORTHO05D007869 0.0e+00 1250.7 710 90.7
TPR.G19031 Trifolium pratense HOM05D005929 ORTHO05D007869 0.0e+00 1211.8 710 87.9
Psat4g087280 Pisum sativum HOM05D005929 ORTHO05D007869 0.0e+00 1199.9 710 87.2
Lj4g0006502 Lotus japonicus HOM05D005929 ORTHO05D007869 0.0e+00 1199.5 707 88.7
Ca_21176_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 0.0e+00 1198.3 710 88.2
Lalb_Chr05g0226621 Lupinus albus HOM05D005929 ORTHO05D007869 0.0e+00 1154.8 709 84.6
arahy.Tifrunner.gnm1.ann1.UKY0C7 Arachis hypogaea HOM05D005929 ORTHO05D007869 0.0e+00 1110.1 792 76.1
Cfa004003 Carpinus fangiana HOM05D005929 ORTHO05D007869 7.5e-287 990.3 727 73.3
CSS0000081 Camellia sinensis var. sinensis HOM05D005929 ORTHO05D007869 2.2e-286 988.8 721 74.1
Manes.12G099700 Manihot esculenta HOM05D005929 ORTHO05D007869 2.8e-286 988.4 716 72.8
MD00G1045200 Malus domestica HOM05D005929 ORTHO05D007869 3.6e-281 971.5 729 72.2
Dinv39868 Davidia involucrata HOM05D005929 ORTHO05D007869 2.3e-280 968.8 716 73.0
CANSAT56G1082 Cannabis sativa HOM05D005929 ORTHO05D007869 7.5e-279 963.8 727 70.4
Prupe.7G135500 Prunus persica HOM05D005929 ORTHO05D007869 7.5e-279 963.8 725 71.6
GSVIVG01022148001 Vitis vinifera HOM05D005929 ORTHO05D007869 3.7e-278 961.4 716 71.4
Potri.005G137100 Populus trichocarpa HOM05D005929 ORTHO05D007869 4.1e-277 958.0 717 69.6
Ca_22183_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 9.1e-277 956.8 587 85.5
Ciclev10025029m.g Citrus clementina HOM05D005929 ORTHO05D007869 6.6e-275 950.7 720 71.0
Actinidia16503 Actinidia chinensis HOM05D005929 ORTHO05D007869 2.5e-274 948.7 717 71.5
MD02G1169700 Malus domestica HOM05D005929 ORTHO05D007869 2.8e-273 945.3 725 71.2
ClCG01G016760 Citrullus lanatus HOM05D005929 ORTHO05D007869 5.7e-271 937.6 715 69.4
Sabra05G0109600 Salix brachista HOM05D005929 ORTHO05D007869 2.2e-270 935.6 717 69.2
CsaV3_6G043190 Cucumis sativus L. HOM05D005929 ORTHO05D007869 2.0e-268 929.1 708 69.9
RcHm_v2.0_Chr2g0105071 Rosa chinensis HOM05D005929 ORTHO05D007869 1.3e-267 926.4 722 70.9
CiPaw.02G008900 Carya illinoinensis HOM05D005929 ORTHO05D007869 5.0e-267 924.5 720 68.8
MELO3C007555.2 Cucumis melo HOM05D005929 ORTHO05D007869 1.1e-266 923.3 712 69.1
CiPaw.01G019600 Carya illinoinensis HOM05D005929 ORTHO05D007869 1.4e-264 916.4 727 69.6
TWI09G0459 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 1.8e-264 916.0 715 69.7
MBI06_g04503_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D007869 8.9e-264 913.7 732 68.6
Gorai.007G211400 Gossypium raimondii HOM05D005929 ORTHO05D007869 1.5e-263 912.9 716 68.6
FvH4_1g15790 Fragaria vesca HOM05D005929 ORTHO05D007869 9.8e-263 910.2 716 70.3
FAN28G0152 Fragaria x ananassa HOM05D005929 ORTHO05D007869 9.8e-263 910.2 716 70.3
Duzib147G0952 Durio zibethinus HOM05D005929 ORTHO05D007869 2.2e-262 909.1 713 67.9
FAN19G1416 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.2e-262 909.1 716 70.1
FAN23G0057 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.9e-262 908.7 716 70.0
FAN26G1042 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.9e-262 908.7 716 70.3
TWI53G1997 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 2.4e-261 905.6 714 66.8
TAR628G1297 Trochodendron aralioides HOM05D005929 ORTHO05D007869 3.2e-261 905.2 719 68.8
Sed0025648 Sechium edule HOM05D005929 ORTHO05D007869 4.1e-261 904.8 717 67.4
Thecc.01G053700 Theobroma cacao HOM05D005929 ORTHO05D007869 1.2e-260 903.3 716 68.6
COL.COLO4_11392 Corchorus olitorius HOM05D005929 ORTHO05D007869 1.6e-260 902.9 720 69.0
Gorai.003G022900 Gossypium raimondii HOM05D005929 ORTHO05D007869 3.3e-258 895.2 709 67.4
Gohir.D03G021300 Gossypium hirsutum HOM05D005929 ORTHO05D007869 3.1e-256 888.6 709 66.9
Nn1g05837 Nelumbo nucifera HOM05D005929 ORTHO05D007869 3.4e-255 885.2 724 67.4
Gohir.A02G159200 Gossypium hirsutum HOM05D005929 ORTHO05D007869 5.8e-255 884.4 709 67.0
Gohir.A11G190800 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.2e-254 882.5 716 67.3
PGR102G2065 Punica granatum HOM05D005929 ORTHO05D007869 4.9e-254 881.3 721 65.7
Lj4A143G78 Lonicera japonica HOM05D005929 ORTHO05D007869 6.4e-254 880.9 724 67.0
Gohir.D11G197600 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.7e-251 872.8 716 67.5
Atru.chr3.351 Acer truncatum HOM05D005929 ORTHO05D007869 6.2e-249 864.4 635 72.1
Cc07_g05890 Coffea canephora HOM05D005929 ORTHO05D007869 1.4e-248 863.2 709 64.9
Eucgr.H02007 Eucalyptus grandis HOM05D005929 ORTHO05D007869 1.7e-246 856.3 730 64.9
Lalb_Chr09g0333751 Lupinus albus HOM05D005929 ORTHO05D007869 3.7e-246 855.1 529 83.7
Sc03g0001480 Simmondsia chinensis HOM05D005929 ORTHO05D007869 2.1e-244 849.4 708 64.1
Rhsim08G0101600 Rhododendron simsii HOM05D005929 ORTHO05D007869 1.3e-243 846.7 938 53.8
MSTRG.23760 Avicennia marina HOM05D005929 ORTHO05D007869 3.9e-243 845.1 714 65.8
THA.LOC104821272 Tarenaya hassleriana HOM05D005929 ORTHO05D007869 1.2e-241 840.1 720 64.2
EL10Ac6g15157 Beta vulgaris HOM05D005929 ORTHO05D007869 6.2e-241 837.8 733 64.1
Hund13561 Selenicereus undatus HOM05D005929 ORTHO05D007869 3.1e-240 835.5 728 64.0
Peaxi162Scf00964g00160 Petunia axillaris HOM05D005929 ORTHO05D007869 3.4e-239 832.0 723 61.4
DCAR_010904 Daucus carota HOM05D005929 ORTHO05D007869 9.9e-239 830.5 718 64.8
PGSC0003DMG400015776 Solanum tuberosum HOM05D005929 ORTHO05D007869 4.2e-237 825.1 717 63.5
Nitab4.5_0010605g0010 Nicotiana tabacum HOM05D005929 ORTHO05D007869 1.6e-236 823.2 722 62.7
Migut.H00446 Erythranthe guttata HOM05D005929 ORTHO05D007869 2.3e-235 819.3 715 62.9
QL06p041881 Quercus lobata HOM05D005929 ORTHO05D007869 2.3e-235 819.3 592 72.3
PSO170G4100 Papaver somniferum HOM05D005929 ORTHO05D007869 7.3e-234 814.3 727 61.6
Solyc02g090650.4 Solanum lycopersicum HOM05D005929 ORTHO05D007869 1.3e-233 813.5 715 63.1
Sopen02g035300 Solanum pennellii HOM05D005929 ORTHO05D007869 1.1e-232 810.4 717 62.9
PSO210G3061 Papaver somniferum HOM05D005929 ORTHO05D007869 4.0e-232 808.5 723 62.0
CAN.G836.71 Capsicum annuum HOM05D005929 ORTHO05D007869 1.2e-231 807.0 718 61.8
ECA232G2456 Erigeron canadensis HOM05D005929 ORTHO05D007869 1.3e-227 793.5 711 63.3
vmacro17944 Vaccinium macrocarpon HOM05D005929 ORTHO05D007869 1.3e-227 793.5 923 51.9
HPP92_009382 Vanilla planifolia HOM05D005929 ORTHO05D007869 2.3e-227 792.7 717 62.5
SGA_v2.0_scaffold15G07274 Striga asiatica HOM05D005929 ORTHO05D007869 3.9e-227 792.0 715 60.4
Lsat_1_v5_gn_4_168021 Lactuca sativa HOM05D005929 ORTHO05D007869 5.1e-227 791.6 704 62.8
Oeu039068.2 Olea europaea HOM05D005929 ORTHO05D007869 1.1e-226 790.4 749 59.8
HanXRQChr15g0490721 Helianthus annuus HOM05D005929 ORTHO05D007869 2.5e-226 789.3 707 62.0
Nitab4.5_0000310g0090 Nicotiana tabacum HOM05D005929 ORTHO05D007869 4.8e-225 785.0 725 61.0
Thhalv10003742m.g Eutrema salsugineum HOM05D005929 ORTHO05D007869 1.4e-221 773.5 721 58.3
ATR0100G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 2.3e-219 766.1 721 59.1
Sp2g29870 Schrenkiella parvula HOM05D005929 ORTHO05D007869 2.1e-217 759.6 717 57.7
Aa31LG1G15360 Aethionema arabicum HOM05D005929 ORTHO05D007869 1.1e-216 757.3 766 56.8
AL8G44640 Arabidopsis lyrata HOM05D005929 ORTHO05D007869 2.4e-216 756.1 724 59.1
Carub.0008s2770 Capsella rubella HOM05D005929 ORTHO05D007869 1.1e-210 737.3 724 58.0
C07p24970 Brassica napus HOM05D005929 ORTHO05D007869 9.6e-210 734.2 718 56.8
BcaC06g34750 Brassica carinata HOM05D005929 ORTHO05D007869 1.1e-208 730.7 718 56.5
BraA07t29438Z Brassica rapa HOM05D005929 ORTHO05D007869 1.8e-208 729.9 718 56.7
Cpa.g.sc55.172 Carica papaya HOM05D005929 ORTHO05D007869 3.4e-207 725.7 545 70.5
Aqoxy5G01270 Aquilegia oxysepala HOM05D005929 ORTHO05D007869 4.5e-207 725.3 713 57.9
BcaB02g09988 Brassica carinata HOM05D005929 ORTHO05D007869 1.3e-206 723.8 718 56.1
A07p17110 Brassica napus HOM05D005929 ORTHO05D007869 1.7e-206 723.4 719 56.5
BolC7t43027H Brassica oleracea HOM05D005929 ORTHO05D007869 7.1e-205 718.0 742 54.7
Os10g0382300 Oryza sativa ssp. japonica HOM05D005929 ORTHO05D007869 6.7e-203 711.4 727 55.2
unitig_899.g14965 Utricularia gibba HOM05D005929 ORTHO05D007869 3.3e-202 709.1 739 56.2
AUR62003860 Chenopodium quinoa HOM05D005929 ORTHO05D007869 6.3e-201 704.9 628 61.8
Zm00001eb223840 Zea mays HOM05D005929 ORTHO05D007869 4.5e-199 698.7 726 55.5
AUR62001947 Chenopodium quinoa HOM05D005929 ORTHO05D007869 5.9e-199 698.4 623 61.6
Duzib264G1189 Durio zibethinus HOM05D005929 ORTHO05D007869 1.4e-195 687.2 709 55.7
Hma1.2p1_0200F.1_g086000 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 2.0e-194 683.3 577 66.6
Ah.03g144730 Amaranthus hybridus HOM05D005929 ORTHO05D007869 2.9e-174 616.3 598 59.9
CARHR280890 Cardamine hirsuta HOM05D005929 ORTHO05D007869 3.2e-165 586.3 590 55.6
AT5G66810 Arabidopsis thaliana HOM05D005929 ORTHO05D007869 1.0e-150 538.1 515 58.8
Pp3c4_14260 Physcomitrium patens HOM05D005929 ORTHO05D007869 1.6e-132 477.6 769 41.2
Mapoly0148s0013 Marchantia polymorpha HOM05D005929 ORTHO05D007869 1.1e-128 464.9 790 38.5
Haze_15421 Corylus avellana HOM05D005929 ORTHO05D007869 4.0e-123 446.4 459 57.3
SMO116G0373 Selaginella moellendorffii HOM05D005929 ORTHO05D007869 6.6e-118 429.1 715 39.0
SalBow1G6022 Salvia bowleyana HOM05D005929 ORTHO05D007869 6.0e-95 352.8 296 63.9
CDE10G0678 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 1.9e-93 347.8 272 65.4
CDE10G0504 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 2.4e-91 340.9 443 49.9
SEGI_10908 Sequoiadendron giganteum HOM05D005929 ORTHO05D000002 2.4e-75 287.7 430 43.5
Hma1.2p1_0200F.1_g086010 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 6.5e-73 279.6 306 55.2
Dinv29975 Davidia involucrata HOM05D005929 ORTHO05D007869 5.7e-61 240.0 369 44.7
PSO782G4943 Papaver somniferum HOM05D005929 ORTHO05D007869 1.9e-56 224.9 182 65.9
DCAR_001419 Daucus carota HOM05D005929 ORTHO05D007869 7.5e-53 213.0 285 48.1
RcHm_v2.0_Chr7g0235891 Rosa chinensis HOM05D005929 ORTHO05D007869 7.5e-53 213.0 186 59.1
Lalb_Chr09g0333761 Lupinus albus HOM05D005929 ORTHO05D007869 2.4e-51 208.0 153 79.7
QL06p041873 Quercus lobata HOM05D005929 ORTHO05D007869 3.8e-41 174.1 126 80.2
PSO339G4212 Papaver somniferum HOM05D005929 ORTHO05D007869 1.9e-40 171.8 156 55.8
MD15G1282000 Malus domestica HOM05D005929 ORTHO05D007869 1.4e-38 165.6 105 81.9
MD15G1282100 Malus domestica HOM05D005929 ORTHO05D007869 2.0e-37 161.8 97 83.5
Cpa.g.sc55.170 Carica papaya HOM05D005929 ORTHO05D007869 1.3e-36 159.1 133 72.9
ATR0833G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 2.3e-33 148.3 126 65.1
QL06p041946 Quercus lobata HOM05D005929 ORTHO05D007869 3.3e-32 144.4 144 57.6
Lsat_1_v5_gn_2_14601 Lactuca sativa HOM05D005929 ORTHO05D029973 2.1e-23 115.2 151 46.4
MBI08_g05057_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 9.2e-19 99.8 107 48.6
CAN.G363.39 Capsicum annuum HOM05D005929 ORTHO05D007869 1.9e-08 65.5 128 35.2
unitig_736.g22376 Utricularia gibba HOM05D005929 ORTHO05D425945 5.2e-06 57.4 76 44.7


User provided reference genes

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