Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 4.7e-56 221.1 121 100.0
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 8.2e-53 210.3 121 95.0
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 1.7e-45 186.0 106 95.3
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 6.8e-39 164.1 106 83.0
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 3.4e-38 161.8 106 81.1
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 1.3e-37 159.8 106 80.2
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 4.1e-36 154.8 106 78.3
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 7.0e-36 154.1 106 73.6
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 7.0e-36 154.1 106 73.6
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 9.2e-36 153.7 106 77.4
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 1.6e-35 152.9 106 81.1
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 7.8e-35 150.6 106 73.6
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 3.8e-34 148.3 106 73.6
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 1.7e-29 132.9 106 67.0
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 5.4e-28 127.9 106 67.0
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 2.7e-27 125.6 103 64.1
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 5.9e-27 124.4 111 67.6
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 1.7e-26 122.9 106 61.3
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 3.3e-25 118.6 105 61.0
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 7.3e-25 117.5 106 61.3
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 9.5e-25 117.1 105 59.0
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.1e-24 115.9 107 57.9
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 2.8e-24 115.5 103 59.2
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 4.7e-24 114.8 103 61.2
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 6.2e-24 114.4 108 58.3
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 8.0e-24 114.0 103 60.2
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.8e-23 112.8 105 59.0
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.3e-23 112.5 105 59.0
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 4.0e-23 111.7 105 60.0
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.2e-23 111.3 104 58.7
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 6.8e-23 110.9 106 56.6
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 6.8e-23 110.9 104 56.7
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 4.4e-22 108.2 92 63.0
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 7.5e-22 107.5 91 61.5
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 7.5e-22 107.5 114 54.4
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 1.7e-21 106.3 103 58.3
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 2.2e-21 105.9 105 56.2
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 2.9e-21 105.5 106 54.7
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 2.9e-21 105.5 85 63.5
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 3.7e-21 105.1 105 55.2
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.9e-21 104.8 102 55.9
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 8.3e-21 104.0 94 66.0
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.3e-21 104.0 88 67.0
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.3e-21 104.0 94 66.0
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 8.3e-21 104.0 94 66.0
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 8.3e-21 104.0 102 54.9
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.1e-20 103.6 91 65.9
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 1.1e-20 103.6 105 55.2
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 1.9e-20 102.8 107 55.1
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 1.9e-20 102.8 96 61.5
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 1.9e-20 102.8 106 54.7
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 2.4e-20 102.4 91 60.4
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 2.4e-20 102.4 93 58.1
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 2.4e-20 102.4 93 58.1
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 2.4e-20 102.4 87 62.1
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 2.4e-20 102.4 103 52.4
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 4.1e-20 101.7 104 51.9
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 7.0e-20 100.9 105 53.3
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 7.0e-20 100.9 91 59.3
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 9.2e-20 100.5 108 50.9
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 1.2e-19 100.1 105 53.3
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 1.6e-19 99.8 107 53.3
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.6e-19 99.8 96 59.4
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 1.6e-19 99.8 83 60.2
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 2.0e-19 99.4 82 59.8
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.0e-19 99.4 87 55.2
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.0e-19 99.4 100 51.0
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 2.0e-19 99.4 107 53.3
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 2.0e-19 99.4 104 53.8
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 2.7e-19 99.0 101 52.5
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 3.5e-19 98.6 105 51.4
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 3.5e-19 98.6 105 52.4
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 3.5e-19 98.6 109 49.5
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 4.6e-19 98.2 83 59.0
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 4.6e-19 98.2 105 51.4
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 4.6e-19 98.2 103 54.4
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 4.6e-19 98.2 104 53.8
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 4.6e-19 98.2 104 52.9
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 4.6e-19 98.2 87 58.6
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 6.0e-19 97.8 103 54.4
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 6.0e-19 97.8 76 63.2
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 6.0e-19 97.8 95 55.8
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 7.8e-19 97.4 98 56.1
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 7.8e-19 97.4 107 53.3
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 7.8e-19 97.4 91 59.3
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 7.8e-19 97.4 97 53.6
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 7.8e-19 97.4 103 50.5
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.0e-18 97.1 109 53.2
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.0e-18 97.1 109 53.2
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 1.0e-18 97.1 103 48.5
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 1.0e-18 97.1 88 58.0
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 1.3e-18 96.7 84 57.1
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 1.3e-18 96.7 120 45.0
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 1.7e-18 96.3 79 58.2
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 2.3e-18 95.9 92 57.6
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 2.3e-18 95.9 120 43.3
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 2.3e-18 95.9 105 53.3
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 2.3e-18 95.9 77 63.6
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 3.0e-18 95.5 95 55.8
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 3.0e-18 95.5 120 43.3
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 3.0e-18 95.5 103 48.5
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 3.9e-18 95.1 99 54.5
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 3.9e-18 95.1 89 58.4
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 5.0e-18 94.7 96 56.2
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 5.0e-18 94.7 118 48.3
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 6.6e-18 94.4 95 51.6
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 6.6e-18 94.4 93 55.9
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 8.6e-18 94.0 91 57.1
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 8.6e-18 94.0 95 57.9
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 8.6e-18 94.0 102 49.0
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.1e-17 93.6 87 58.6
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.5e-17 93.2 72 70.8
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 1.9e-17 92.8 83 57.8
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 2.5e-17 92.4 95 53.7
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 2.5e-17 92.4 103 50.5
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 2.5e-17 92.4 78 64.1
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 3.3e-17 92.0 91 52.7
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 5.6e-17 91.3 77 59.7
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 1.2e-16 90.1 100 53.0
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.2e-16 90.1 95 56.8
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 1.6e-16 89.7 95 53.7
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 2.1e-16 89.4 98 52.0
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 2.1e-16 89.4 103 45.6
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 8.1e-16 87.4 105 45.7
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 1.4e-15 86.7 101 54.5
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 1.8e-15 86.3 107 46.7
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 4.0e-15 85.1 96 53.1
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 5.2e-15 84.7 91 50.5
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 8.9e-15 84.0 101 52.5
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 2.0e-14 82.8 90 51.1
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 3.4e-14 82.0 100 49.0
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 3.4e-14 82.0 91 51.6
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 1.3e-13 80.1 80 50.0
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 2.2e-13 79.3 96 49.0
Lalb_Chr22g0354081 Lupinus albus HOM05D000001 ORTHO05D048480 2.9e-13 79.0 67 59.7
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 6.4e-13 77.8 133 39.1
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 4.1e-12 75.1 46 80.4
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 2.7e-11 72.4 92 50.0
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 2.7e-11 72.4 41 90.2
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 3.5e-11 72.0 46 78.3
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 1.0e-10 70.5 42 81.0
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 3.9e-10 68.6 42 78.6
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 1.9e-09 66.2 89 40.4
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 2.5e-09 65.9 98 39.8
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 2.1e-08 62.8 82 42.7
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 6.2e-08 61.2 107 35.5
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 1.1e-07 60.5 38 78.9
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 1.1e-07 60.5 43 67.4
arahy.Tifrunner.gnm1.ann1.20C9TU Arachis hypogaea HOM05D000211 ORTHO05D002993 8.9e-07 57.4 59 54.2
TPR.G8100 Trifolium pratense HOM05D000001 ORTHO05D048480 5.8e-06 54.7 46 63.0
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 9.9e-06 53.9 37 67.6


User provided reference genes

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