Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G170002 Glycine max HOM05D000842 ORTHO05D000650 4.6e-70 267.7 128 100.0
Glyma.15G269300 Glycine max HOM05D000842 ORTHO05D000650 3.1e-34 148.7 93 80.6
Glyma.08G149000 Glycine max HOM05D000842 ORTHO05D000650 1.2e-33 146.7 93 79.6
Phvul.005G039800 Phaseolus vulgaris HOM05D000842 ORTHO05D000650 8.5e-32 140.6 93 78.5
Lalb_Chr01g0015161 Lupinus albus HOM05D000842 ORTHO05D000650 3.6e-30 135.2 94 73.4
VMungo1080G0610 Vigna mungo HOM05D000842 ORTHO05D000650 3.6e-30 135.2 88 80.7
Lj3g0009813 Lotus japonicus HOM05D000842 ORTHO05D000650 6.1e-30 134.4 97 72.2
Ca_02945_v3 Cicer arietinum L. HOM05D000842 ORTHO05D000650 1.1e-28 130.2 98 70.4
TPR.G11742 Trifolium pratense HOM05D000842 ORTHO05D000650 1.1e-28 130.2 97 72.2
CiPaw.11G155400 Carya illinoinensis HOM05D000842 ORTHO05D000650 1.7e-27 126.3 93 68.8
Prupe.4G155500 Prunus persica HOM05D000842 ORTHO05D000650 8.2e-27 124.0 93 67.7
QL08p024827 Quercus lobata HOM05D000842 ORTHO05D000650 4.1e-26 121.7 93 66.7
ECA236G2583 Erigeron canadensis HOM05D000842 ORTHO05D000650 2.6e-25 119.0 99 62.6
Manes.03G078500 Manihot esculenta HOM05D000842 ORTHO05D000650 3.5e-25 118.6 93 67.7
Medtr2g060900 Medicago truncatula HOM05D000842 ORTHO05D000650 4.5e-25 118.2 100 68.0
Ciclev10021239m.g Citrus clementina HOM05D000842 ORTHO05D000650 1.3e-24 116.7 93 62.4
Cfa019507 Carpinus fangiana HOM05D000842 ORTHO05D000650 1.7e-24 116.3 93 63.4
Cc05_g10630 Coffea canephora HOM05D000842 ORTHO05D000650 1.7e-24 116.3 96 63.5
Haze_08444 Corylus avellana HOM05D000842 ORTHO05D000650 1.7e-24 116.3 93 63.4
Psat1g128080 Pisum sativum HOM05D000842 ORTHO05D000650 1.7e-24 116.3 103 65.0
AUR62019667 Chenopodium quinoa HOM05D000842 ORTHO05D000650 1.1e-23 113.6 94 59.6
vmacro09419 Vaccinium macrocarpon HOM05D000842 ORTHO05D000650 1.1e-23 113.6 97 61.9
AUR62013943 Chenopodium quinoa HOM05D000842 ORTHO05D000650 2.5e-23 112.5 94 59.6
CiPaw.12G110100 Carya illinoinensis HOM05D000842 ORTHO05D000650 5.5e-23 111.3 91 61.5
Lsat_1_v5_gn_7_100260 Lactuca sativa HOM05D000842 ORTHO05D000650 7.2e-23 110.9 95 60.0
MD03G1250800 Malus domestica HOM05D000842 ORTHO05D000650 9.4e-23 110.5 93 63.4
EL10Ac4g08436 Beta vulgaris HOM05D000842 ORTHO05D000650 1.2e-22 110.2 95 58.9
Thecc.07G134900 Theobroma cacao HOM05D000842 ORTHO05D000650 4.7e-22 108.2 93 60.2
arahy.Tifrunner.gnm1.ann1.68BB74 Arachis hypogaea HOM05D000842 ORTHO05D000650 6.1e-22 107.8 81 71.6
CSS0006711 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 6.1e-22 107.8 96 60.4
PGR031G0859 Punica granatum HOM05D000842 ORTHO05D000650 1.0e-21 107.1 96 63.5
GSVIVG01021318001 Vitis vinifera HOM05D000842 ORTHO05D000650 1.0e-21 107.1 93 62.4
CSS0037827 Camellia sinensis var. sinensis HOM05D000842 ORTHO05D000650 4.0e-21 105.1 96 59.4
COL.COLO4_03606 Corchorus olitorius HOM05D000842 ORTHO05D000650 5.2e-21 104.8 95 61.1
Ah.04g161920 Amaranthus hybridus HOM05D000842 ORTHO05D000650 8.8e-21 104.0 94 56.4
arahy.Tifrunner.gnm1.ann1.B9TNKV Arachis hypogaea HOM05D000842 ORTHO05D000650 2.0e-20 102.8 148 45.3
Hma1.2p1_0713F.1_g207890 Hydrangea macrophylla HOM05D000842 ORTHO05D000650 2.6e-20 102.4 95 61.1
MD11G1271000 Malus domestica HOM05D000842 ORTHO05D000650 2.6e-20 102.4 93 61.3
DCAR_019619 Daucus carota HOM05D000842 ORTHO05D000650 4.4e-20 101.7 99 58.6
Sc03g0010740 Simmondsia chinensis HOM05D000842 ORTHO05D000650 4.4e-20 101.7 97 59.8
TAR627G1038 Trochodendron aralioides HOM05D000842 ORTHO05D000650 4.4e-20 101.7 93 58.1
Actinidia00874 Actinidia chinensis HOM05D000842 ORTHO05D000650 7.4e-20 100.9 101 58.4
Dinv13354 Davidia involucrata HOM05D000842 ORTHO05D000650 7.4e-20 100.9 97 57.7
Gorai.009G361700 Gossypium raimondii HOM05D000842 ORTHO05D000650 7.4e-20 100.9 95 57.9
RcHm_v2.0_Chr5g0029311 Rosa chinensis HOM05D000842 ORTHO05D000650 7.4e-20 100.9 93 61.3
Atru.chr2.1899 Acer truncatum HOM05D000842 ORTHO05D000650 1.7e-19 99.8 93 57.0
GSVIVG01014086001 Vitis vinifera HOM05D000842 ORTHO05D000650 1.7e-19 99.8 93 57.0
Gohir.D01G037700 Gossypium hirsutum HOM05D000842 ORTHO05D000650 2.2e-19 99.4 95 58.9
Gorai.002G046000 Gossypium raimondii HOM05D000842 ORTHO05D000650 2.2e-19 99.4 95 58.9
Gohir.A01G047000 Gossypium hirsutum HOM05D000842 ORTHO05D000650 2.8e-19 99.0 95 58.9
Oeu010036.1 Olea europaea HOM05D000842 ORTHO05D000650 2.8e-19 99.0 99 51.5
Nn6g34387 Nelumbo nucifera HOM05D000842 ORTHO05D000650 3.7e-19 98.6 94 58.5
FvH4_3g17610 Fragaria vesca HOM05D000842 ORTHO05D000650 1.4e-18 96.7 93 59.1
FAN11G0959 Fragaria x ananassa HOM05D000842 ORTHO05D000650 1.4e-18 96.7 93 59.1
FAN16G3507 Fragaria x ananassa HOM05D000842 ORTHO05D000650 1.4e-18 96.7 93 59.1
FAN21G0331 Fragaria x ananassa HOM05D000842 ORTHO05D000650 1.4e-18 96.7 93 59.1
Gohir.A04G045400 Gossypium hirsutum HOM05D000842 ORTHO05D000650 1.4e-18 96.7 93 54.8
MSTRG.14253 Avicennia marina HOM05D000842 ORTHO05D000650 1.8e-18 96.3 99 53.5
CAN.G375.55 Capsicum annuum HOM05D000842 ORTHO05D000650 4.1e-18 95.1 99 53.5
Aqoxy4G00170 Aquilegia oxysepala HOM05D000842 ORTHO05D000650 5.3e-18 94.7 93 55.9
Gohir.D05G337400 Gossypium hirsutum HOM05D000842 ORTHO05D000650 5.3e-18 94.7 93 54.8
PSO541G2069 Papaver somniferum HOM05D000842 ORTHO05D000650 7.0e-18 94.4 110 52.7
FAN25G0524 Fragaria x ananassa HOM05D000842 ORTHO05D000650 9.1e-18 94.0 93 58.1
TAR629G1485 Trochodendron aralioides HOM05D000842 ORTHO05D000650 1.2e-17 93.6 93 54.8
TWI38G0350 Tripterygium wilfordii HOM05D000842 ORTHO05D000650 3.5e-17 92.0 93 51.6
Actinidia12607 Actinidia chinensis HOM05D000842 ORTHO05D000650 1.3e-16 90.1 96 56.2
TWI39G0754 Tripterygium wilfordii HOM05D000842 ORTHO05D000650 6.5e-16 87.8 95 51.6
Sabra16G0252400 Salix brachista HOM05D000842 ORTHO05D000650 8.5e-16 87.4 93 54.8
Migut.H02029 Erythranthe guttata HOM05D000842 ORTHO05D000650 1.1e-15 87.0 100 51.0
Thhalv10021120m.g Eutrema salsugineum HOM05D000842 ORTHO05D000650 8.0e-14 80.9 90 57.8
THA.LOC104822582 Tarenaya hassleriana HOM05D000842 ORTHO05D000650 1.0e-13 80.5 101 51.5
Zm00001eb322370 Zea mays HOM05D000842 ORTHO05D000650 1.0e-13 80.5 95 48.4
ClCG11G017130 Citrullus lanatus HOM05D000842 ORTHO05D000650 4.0e-13 78.6 94 50.0
Dinv26701 Davidia involucrata HOM05D000842 ORTHO05D000650 8.8e-13 77.4 56 71.4
SEGI_02504 Sequoiadendron giganteum HOM05D000842 ORTHO05D000650 2.0e-12 76.3 89 49.4
Sp3g12980 Schrenkiella parvula HOM05D000842 ORTHO05D000650 2.6e-12 75.9 101 51.5
SGA_v2.0_scaffold130G34257 Striga asiatica HOM05D000842 ORTHO05D000650 2.6e-12 75.9 104 47.1
A05p34700 Brassica napus HOM05D000842 ORTHO05D000650 3.4e-12 75.5 97 53.6
MELO3C025674.2 Cucumis melo HOM05D000842 ORTHO05D000650 3.4e-12 75.5 94 48.9
Cpa.g.sc682.4 Carica papaya HOM05D000842 ORTHO05D000650 4.4e-12 75.1 93 48.4
TWI38G0621 Tripterygium wilfordii HOM05D000842 ORTHO05D000650 4.4e-12 75.1 93 46.2
C05p52500 Brassica napus HOM05D000842 ORTHO05D000650 5.7e-12 74.7 97 53.6
CDE01G0231 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 5.7e-12 74.7 98 46.9
BcaC05g29039 Brassica carinata HOM05D000842 ORTHO05D000650 7.5e-12 74.3 97 53.6
BolC5t33933H Brassica oleracea HOM05D000842 ORTHO05D000650 7.5e-12 74.3 97 53.6
Potri.001G382700 Populus trichocarpa HOM05D000842 ORTHO05D000650 9.8e-12 73.9 93 50.5
CsaV3_4G032790 Cucumis sativus L. HOM05D000842 ORTHO05D000650 2.2e-11 72.8 94 47.9
CARHR089690 Cardamine hirsuta HOM05D000842 ORTHO05D000650 4.8e-11 71.6 104 50.0
BraA05t22286Z Brassica rapa HOM05D000842 ORTHO05D000650 6.3e-11 71.2 95 52.6
CDE12G0673 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 6.3e-11 71.2 100 45.0
TAR633G2814 Trochodendron aralioides HOM05D000842 ORTHO05D000650 6.3e-11 71.2 90 47.8
Lj1A127G60 Lonicera japonica HOM05D000842 ORTHO05D000650 8.3e-11 70.9 96 46.9
QL01p040006 Quercus lobata HOM05D000842 ORTHO05D000650 8.3e-11 70.9 96 45.8
HPP92_012416 Vanilla planifolia HOM05D000842 ORTHO05D000650 1.1e-10 70.5 97 43.3
LjContig00141g0019488 Lotus japonicus HOM05D000842 ORTHO05D000650 1.4e-10 70.1 97 43.3
Sed0020191 Sechium edule HOM05D000842 ORTHO05D000650 1.4e-10 70.1 94 45.7
Eucgr.F03229 Eucalyptus grandis HOM05D000842 ORTHO05D000650 2.4e-10 69.3 64 60.9
Carub.0003s1442 Capsella rubella HOM05D000842 ORTHO05D000650 3.1e-10 68.9 107 46.7
RhsimUnG0206200 Rhododendron simsii HOM05D000842 ORTHO05D000650 3.1e-10 68.9 55 67.3
AT3G14750 Arabidopsis thaliana HOM05D000842 ORTHO05D000650 4.1e-10 68.6 105 46.7
Dinv09662 Davidia involucrata HOM05D000842 ORTHO05D000650 4.1e-10 68.6 94 46.8
HanXRQChr15g0495361 Helianthus annuus HOM05D000842 ORTHO05D000650 4.1e-10 68.6 58 63.8
Lalb_Chr04g0252021 Lupinus albus HOM05D000842 ORTHO05D000650 1.2e-09 67.0 91 42.9
Peaxi162Scf00111g10127 Petunia axillaris HOM05D000842 ORTHO05D000650 1.2e-09 67.0 99 44.4
COL.COLO4_11128 Corchorus olitorius HOM05D000842 ORTHO05D000650 1.6e-09 66.6 63 52.4
RcHm_v2.0_Chr5g0071291 Rosa chinensis HOM05D000842 ORTHO05D000650 2.0e-09 66.2 93 41.9
Sed0019393 Sechium edule HOM05D000842 ORTHO05D000650 2.0e-09 66.2 96 46.9
Actinidia23867 Actinidia chinensis HOM05D000842 ORTHO05D000650 4.5e-09 65.1 97 43.3
AL3G27060 Arabidopsis lyrata HOM05D000842 ORTHO05D000650 5.9e-09 64.7 104 48.1
CsaV3_1G036640 Cucumis sativus L. HOM05D000842 ORTHO05D000650 5.9e-09 64.7 91 46.2
ClCG03G000280 Citrullus lanatus HOM05D000842 ORTHO05D000650 1.0e-08 63.9 93 45.2
BcaB06g25359 Brassica carinata HOM05D000842 ORTHO05D000650 1.3e-08 63.5 94 52.1
SEGI_10988 Sequoiadendron giganteum HOM05D000842 ORTHO05D000650 1.3e-08 63.5 94 43.6
Medtr5g072760 Medicago truncatula HOM05D000842 ORTHO05D000650 1.7e-08 63.2 92 43.5
Os07g0508200 Oryza sativa ssp. japonica HOM05D000842 ORTHO05D000650 1.7e-08 63.2 98 44.9
GSVIVG01024666001 Vitis vinifera HOM05D000842 ORTHO05D000650 1.7e-08 63.2 99 44.4
FAN11G2963 Fragaria x ananassa HOM05D000842 ORTHO05D000650 2.9e-08 62.4 75 48.0
Potri.001G281400 Populus trichocarpa HOM05D000842 ORTHO05D000650 3.8e-08 62.0 85 42.4
Psat6g139640 Pisum sativum HOM05D000842 ORTHO05D000650 6.5e-08 61.2 96 42.7
Atru.chr3.4132 Acer truncatum HOM05D000842 ORTHO05D000650 8.5e-08 60.8 70 48.6
Cc01_g14720 Coffea canephora HOM05D000842 ORTHO05D000650 1.9e-07 59.7 99 45.5
Solyc07g062110.3 Solanum lycopersicum HOM05D000842 ORTHO05D000650 2.5e-07 59.3 99 41.4
Sopen07g030370 Solanum pennellii HOM05D000842 ORTHO05D000650 2.5e-07 59.3 99 41.4
Lj1A822T52 Lonicera japonica HOM05D000842 ORTHO05D000650 3.2e-07 58.9 98 41.8
Actinidia34476 Actinidia chinensis HOM05D000842 ORTHO05D000650 5.5e-07 58.2 97 42.3
ATR0680G176 Amborella trichopoda HOM05D000842 ORTHO05D000650 5.5e-07 58.2 98 41.8
Potri.009G076700 Populus trichocarpa HOM05D000842 ORTHO05D000650 5.5e-07 58.2 86 39.5
Migut.D00852 Erythranthe guttata HOM05D000842 ORTHO05D000650 7.2e-07 57.8 111 41.4
Nitab4.5_0003618g0010 Nicotiana tabacum HOM05D000842 ORTHO05D000650 7.2e-07 57.8 99 40.4
PGR102G2939 Punica granatum HOM05D000842 ORTHO05D000650 7.2e-07 57.8 68 48.5
TWI31G0085 Tripterygium wilfordii HOM05D000842 ORTHO05D000650 7.2e-07 57.8 85 47.1
FAN25G2914 Fragaria x ananassa HOM05D000842 ORTHO05D000650 9.4e-07 57.4 56 53.6
CiPaw.13G071300 Carya illinoinensis HOM05D000842 ORTHO05D000650 1.2e-06 57.0 97 40.2
MELO3C020505.2 Cucumis melo HOM05D000842 ORTHO05D000650 1.2e-06 57.0 63 52.4
Nitab4.5_0001140g0080 Nicotiana tabacum HOM05D000842 ORTHO05D000650 1.2e-06 57.0 100 42.0
CDE04G0048 Ceratophyllum demersum HOM05D000842 ORTHO05D000650 1.6e-06 56.6 92 41.3
Ciclev10028985m.g Citrus clementina HOM05D000842 ORTHO05D000650 1.6e-06 56.6 66 48.5
Phvul.008G257500 Phaseolus vulgaris HOM05D000842 ORTHO05D000650 1.6e-06 56.6 93 41.9
Aa31LG8G1970 Aethionema arabicum HOM05D000842 ORTHO05D000650 2.1e-06 56.2 107 42.1
HPP92_014257 Vanilla planifolia HOM05D000842 ORTHO05D000650 2.1e-06 56.2 86 40.7
FAN16G0745 Fragaria x ananassa HOM05D000842 ORTHO05D000650 2.7e-06 55.8 93 41.9
Sabra16G0294900 Salix brachista HOM05D000842 ORTHO05D000650 2.7e-06 55.8 56 51.8
Peaxi162Scf00239g00098 Petunia axillaris HOM05D000842 ORTHO05D000650 3.6e-06 55.5 106 37.7
Sabra09G0058500 Salix brachista HOM05D000842 ORTHO05D000650 3.6e-06 55.5 56 48.2
Dinv28686 Davidia involucrata HOM05D000842 ORTHO05D000650 4.7e-06 55.1 68 48.5
Ca_05641_v3 Cicer arietinum L. HOM05D000842 ORTHO05D000650 6.1e-06 54.7 93 44.1
Manes.02G216400 Manihot esculenta HOM05D000842 ORTHO05D000650 6.1e-06 54.7 72 47.2
Thecc.09G355800 Theobroma cacao HOM05D000842 ORTHO05D000650 6.1e-06 54.7 72 45.8
HPP92_026124 Vanilla planifolia HOM05D000842 ORTHO05D000650 8.0e-06 54.3 91 41.8


User provided reference genes

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