Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 1.6e-168 596.3 371 100.0
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 4.2e-132 475.3 375 82.7
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 4.0e-98 362.5 346 72.3
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 2.5e-76 290.0 368 65.5
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 6.0e-70 268.9 377 57.0
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 1.6e-67 260.8 350 59.1
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 1.4e-55 221.1 346 52.6
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 2.4e-55 220.3 346 51.4
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 2.6e-49 200.3 387 47.5
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 5.8e-49 199.1 389 48.6
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 6.4e-48 195.7 342 52.6
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 3.9e-45 186.4 387 48.1
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 5.6e-44 182.6 346 48.8
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 3.1e-42 176.8 345 49.0
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 4.9e-40 169.5 348 48.3
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 1.4e-39 167.9 361 44.9
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 5.5e-39 166.0 356 40.7
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.1e-38 164.1 396 40.7
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 8.7e-37 158.7 380 42.9
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 1.1e-36 158.3 365 44.9
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.5e-36 157.9 350 41.4
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 1.9e-36 157.5 369 37.7
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.3e-36 156.4 350 40.3
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.3e-35 154.8 350 40.0
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.3e-35 154.8 367 39.8
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 6.3e-35 152.5 340 43.2
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.1e-34 149.8 348 37.4
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 4.1e-34 149.8 311 37.6
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 4.1e-34 149.8 331 43.2
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 5.3e-34 149.4 340 42.6
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 1.5e-33 147.9 354 36.2
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 2.6e-33 147.1 367 40.9
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 3.4e-33 146.7 326 38.3
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 1.0e-32 145.2 370 33.5
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.0e-32 145.2 332 36.7
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.2e-32 144.1 354 41.2
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 5.0e-32 142.9 354 41.5
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 1.4e-31 141.4 363 44.1
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.5e-31 140.6 339 38.9
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 2.5e-31 140.6 339 38.9
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.2e-31 140.2 360 41.4
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 4.2e-31 139.8 357 41.7
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 5.5e-31 139.4 341 38.4
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 3.6e-30 136.7 361 40.4
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 4.6e-30 136.3 378 38.9
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 8.7e-29 132.1 345 40.9
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 2.2e-27 127.5 337 36.5
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.8e-26 124.4 336 38.4
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 6.9e-26 122.5 377 35.5
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 1.5e-25 121.3 294 37.1
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 1.5e-25 121.3 294 37.1
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 5.9e-25 119.4 338 32.8
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 5.9e-25 119.4 339 36.3
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 7.7e-25 119.0 338 33.4
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 7.7e-25 119.0 354 38.4
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 2.9e-24 117.1 336 35.4
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 3.8e-24 116.7 194 44.8
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 5.5e-23 112.8 359 32.3
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 1.2e-22 111.7 339 33.6
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 7.9e-22 109.0 355 31.3
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 1.8e-21 107.8 357 35.6
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 1.8e-21 107.8 335 33.1
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 2.3e-21 107.5 328 35.7
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 3.9e-21 106.7 337 34.7
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 5.1e-21 106.3 337 34.4
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 8.8e-21 105.5 338 35.5
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 1.5e-20 104.8 359 35.7
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.5e-20 104.8 359 35.7
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.7e-20 102.8 313 33.2
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 7.4e-20 102.4 359 35.4
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 7.4e-20 102.4 357 36.7
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 7.4e-20 102.4 336 33.6
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 7.4e-20 102.4 352 39.8
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.3e-19 101.7 305 33.8
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.7e-19 101.3 313 32.6
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 1.7e-19 101.3 337 34.4
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 2.2e-19 100.9 358 28.5
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 2.2e-19 100.9 355 36.1
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.7e-19 100.1 362 35.6
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 3.7e-19 100.1 280 36.8
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 2.4e-18 97.4 338 30.2
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 3.1e-18 97.1 330 38.8
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 4.1e-18 96.7 350 36.6
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 6.9e-18 95.9 365 34.2
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 2.6e-17 94.0 364 38.5
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 7.7e-17 92.4 383 35.0
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 1.7e-16 91.3 260 30.0
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 2.9e-16 90.5 181 49.7
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 8.5e-16 89.0 294 35.4
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 1.1e-15 88.6 339 39.8
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 2.5e-15 87.4 201 40.3
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 2.5e-15 87.4 336 29.2
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 3.2e-15 87.0 276 43.1
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.6e-14 84.7 356 32.0
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 2.1e-14 84.3 378 29.9
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 2.1e-14 84.3 222 31.1
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 3.0e-13 80.5 334 29.9
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 3.9e-13 80.1 216 33.3
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 3.9e-13 80.1 216 33.3
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 3.9e-13 80.1 216 33.3
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 3.9e-13 80.1 363 32.5
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 5.2e-13 79.7 203 31.0
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 6.7e-13 79.3 335 29.0
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 8.8e-13 79.0 204 31.4
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 8.8e-13 79.0 338 32.5
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 2.0e-12 77.8 348 38.8
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 2.6e-12 77.4 200 33.0
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 3.3e-12 77.0 302 32.8
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 3.7e-11 73.6 106 45.3
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 8.2e-11 72.4 332 28.0
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 8.2e-11 72.4 331 29.6
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.8e-10 71.2 191 45.0
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 1.8e-10 71.2 206 33.0
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 2.4e-10 70.9 333 30.3
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 3.1e-10 70.5 213 32.4
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 4.1e-10 70.1 220 29.1
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 9.1e-10 68.9 217 30.9
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 9.1e-10 68.9 194 46.9
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.2e-09 68.6 191 44.5
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 4.5e-09 66.6 218 30.7
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 4.5e-09 66.6 218 30.7
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 5.9e-09 66.2 342 27.2
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 7.7e-09 65.9 212 31.6
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 7.7e-09 65.9 217 30.4
ClCG02G012410 Citrullus lanatus HOM05D005407 ORTHO05D006544 1.7e-08 64.7 103 43.7
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 6.5e-08 62.8 337 31.2
Zm00001eb108270 Zea mays HOM05D013881 ORTHO05D016369 4.2e-07 60.1 139 38.8
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 2.1e-06 57.8 178 34.3
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 2.1e-06 57.8 248 36.7
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 2.7e-06 57.4 193 29.0


User provided reference genes

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