Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G158800 Glycine max HOM05D000237 ORTHO05D043278 3.3e-59 231.5 115 100.0
Glyma.14G216100 Glycine max HOM05D000237 ORTHO05D005051 5.1e-44 181.0 115 81.7
Phvul.008G234600 Phaseolus vulgaris HOM05D000237 ORTHO05D005051 1.4e-41 172.9 115 76.5
VMungo0647G1065 Vigna mungo HOM05D000237 ORTHO05D005051 5.3e-41 171.0 112 76.8
Glyma.02G246000 Glycine max HOM05D000237 ORTHO05D005051 2.6e-40 168.7 112 77.7
VMungo1383G2011 Vigna mungo HOM05D000237 ORTHO05D005051 5.3e-33 144.4 114 64.0
Glyma.11G217400 Glycine max HOM05D000237 ORTHO05D005051 9.0e-33 143.7 114 63.2
Glyma.18G039400 Glycine max HOM05D000237 ORTHO05D005051 4.5e-32 141.4 114 62.3
Phvul.001G231200 Phaseolus vulgaris HOM05D000237 ORTHO05D005051 5.8e-32 141.0 114 62.3
FvH4_1g28910 Fragaria vesca HOM05D000237 ORTHO05D005051 1.0e-31 140.2 115 60.0
Medtr3g067650 Medicago truncatula HOM05D000237 ORTHO05D005051 1.0e-31 140.2 111 63.1
FAN19G0223 Fragaria x ananassa HOM05D000237 ORTHO05D005051 1.3e-31 139.8 115 60.0
Psat5g122360 Pisum sativum HOM05D000237 ORTHO05D005051 1.7e-31 139.4 111 63.1
arahy.Tifrunner.gnm1.ann1.I7EQFT Arachis hypogaea HOM05D000237 ORTHO05D005051 3.8e-31 138.3 114 59.6
arahy.Tifrunner.gnm1.ann1.PJZ2BQ Arachis hypogaea HOM05D000237 ORTHO05D005051 3.8e-31 138.3 114 59.6
FAN28G2693 Fragaria x ananassa HOM05D000237 ORTHO05D005051 6.5e-31 137.5 115 59.1
Ca_08160_v3 Cicer arietinum L. HOM05D000237 ORTHO05D005051 2.5e-30 135.6 111 61.3
RcHm_v2.0_Chr3g0493411 Rosa chinensis HOM05D000237 ORTHO05D005051 4.2e-30 134.8 115 58.3
Lj6g0016753 Lotus japonicus HOM05D000237 ORTHO05D005051 5.5e-30 134.4 111 60.4
FAN23G0123 Fragaria x ananassa HOM05D000237 ORTHO05D005051 4.6e-29 131.3 115 56.5
TPR.G16688 Trifolium pratense HOM05D000237 ORTHO05D005051 1.0e-28 130.2 111 59.5
MD09G1262600 Malus domestica HOM05D000237 ORTHO05D005051 1.3e-28 129.8 115 59.1
Prupe.3G160300 Prunus persica HOM05D000237 ORTHO05D005051 1.8e-28 129.4 112 58.9
Lalb_Chr15g0084841 Lupinus albus HOM05D000237 ORTHO05D005051 2.3e-28 129.0 113 56.6
CiPaw.03G069600 Carya illinoinensis HOM05D000237 ORTHO05D005051 1.5e-27 126.3 109 57.8
QL11p003873 Quercus lobata HOM05D000237 ORTHO05D005051 2.5e-27 125.6 109 56.0
Cfa007831 Carpinus fangiana HOM05D000237 ORTHO05D005051 1.6e-26 122.9 112 54.5
Haze_14234 Corylus avellana HOM05D000237 ORTHO05D005051 2.1e-26 122.5 112 54.5
MD17G1257500 Malus domestica HOM05D000237 ORTHO05D005051 2.8e-26 122.1 111 55.0
TWI53G2128 Tripterygium wilfordii HOM05D000237 ORTHO05D005051 3.8e-23 111.7 113 54.0
TWI74G0299 Tripterygium wilfordii HOM05D000237 ORTHO05D005051 5.0e-23 111.3 112 52.7
Sed0017177 Sechium edule HOM05D000237 ORTHO05D005051 1.4e-22 109.8 115 47.0
Sabra04G0059700 Salix brachista HOM05D000237 ORTHO05D005051 4.2e-22 108.2 112 50.0
Sabra17G0106200 Salix brachista HOM05D000237 ORTHO05D005051 5.5e-22 107.8 112 50.9
MELO3C022852.2 Cucumis melo HOM05D000237 ORTHO05D005051 7.2e-22 107.5 112 48.2
Potri.004G089100 Populus trichocarpa HOM05D000237 ORTHO05D005051 9.3e-22 107.1 112 49.1
Duzib133G0765 Durio zibethinus HOM05D000237 ORTHO05D005051 2.7e-21 105.5 112 50.0
CsaV3_5G024060 Cucumis sativus L. HOM05D000237 ORTHO05D005051 3.5e-21 105.1 113 48.7
arahy.Tifrunner.gnm1.ann1.7W3XT8 Arachis hypogaea HOM05D000237 ORTHO05D005051 4.6e-21 104.8 110 53.6
ClCG03G008660 Citrullus lanatus HOM05D000237 ORTHO05D005051 4.6e-21 104.8 112 46.4
Gohir.A12G056300 Gossypium hirsutum HOM05D000237 ORTHO05D005051 4.6e-21 104.8 112 49.1
arahy.Tifrunner.gnm1.ann1.MDT9N6 Arachis hypogaea HOM05D000237 ORTHO05D005051 6.1e-21 104.4 110 53.6
Manes.01G116400 Manihot esculenta HOM05D000237 ORTHO05D005051 6.1e-21 104.4 112 48.2
COL.COLO4_15734 Corchorus olitorius HOM05D000237 ORTHO05D005051 7.9e-21 104.0 112 49.1
Atru.chr1.1842 Acer truncatum HOM05D000237 ORTHO05D005051 1.3e-20 103.2 117 47.9
Gorai.008G058700 Gossypium raimondii HOM05D000237 ORTHO05D005051 1.3e-20 103.2 112 48.2
Potri.017G126500 Populus trichocarpa HOM05D000237 ORTHO05D005051 1.3e-20 103.2 111 48.6
Ciclev10011487m.g Citrus clementina HOM05D000237 ORTHO05D005051 3.0e-20 102.1 112 47.3
Cpa.g.sc116.32 Carica papaya HOM05D000237 ORTHO05D005051 3.9e-20 101.7 111 47.7
Manes.02G075200 Manihot esculenta HOM05D000237 ORTHO05D005051 1.1e-19 100.1 111 48.6
Duzib211G0213 Durio zibethinus HOM05D000237 ORTHO05D005051 1.5e-19 99.8 104 50.0
CARHR214970 Cardamine hirsuta HOM05D000237 ORTHO05D005051 5.7e-19 97.8 110 51.8
Gohir.D12G055700 Gossypium hirsutum HOM05D000237 ORTHO05D005051 5.7e-19 97.8 112 46.4
Thecc.04G119200 Theobroma cacao HOM05D000237 ORTHO05D005051 5.7e-19 97.8 112 47.3
CSS0025553 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D005051 7.4e-19 97.4 104 52.9
Hma1.2p1_0832F.1_g225530 Hydrangea macrophylla HOM05D000237 ORTHO05D005051 2.2e-18 95.9 106 50.0
TAR629G1729 Trochodendron aralioides HOM05D000237 ORTHO05D005051 2.2e-18 95.9 112 46.4
Actinidia17225 Actinidia chinensis HOM05D000237 ORTHO05D005051 2.8e-18 95.5 107 47.7
Actinidia22790 Actinidia chinensis HOM05D000237 ORTHO05D005051 3.7e-18 95.1 104 51.0
Lj4A177T26 Lonicera japonica HOM05D000237 ORTHO05D005051 4.8e-18 94.7 104 51.0
Cc07_g08090 Coffea canephora HOM05D000237 ORTHO05D005051 6.3e-18 94.4 104 49.0
DCAR_025871 Daucus carota HOM05D000237 ORTHO05D005051 3.1e-17 92.0 103 47.6
GSVIVG01030840001 Vitis vinifera HOM05D000237 ORTHO05D005051 3.1e-17 92.0 104 50.0
TAR371G0812 Trochodendron aralioides HOM05D000237 ORTHO05D005051 1.2e-16 90.1 112 42.0
Nn4g24201 Nelumbo nucifera HOM05D000237 ORTHO05D005051 1.5e-16 89.7 112 39.3
Eucgr.F02834 Eucalyptus grandis HOM05D000237 ORTHO05D005051 2.6e-16 89.0 110 41.8
PGR004G1278 Punica granatum HOM05D000237 ORTHO05D005051 3.4e-16 88.6 105 47.6
AT5G37790 Arabidopsis thaliana HOM05D000237 ORTHO05D005051 4.5e-16 88.2 109 49.5
Carub.0007s3297 Capsella rubella HOM05D000237 ORTHO05D005051 5.9e-16 87.8 116 45.7
HanXRQChr15g0475441 Helianthus annuus HOM05D000237 ORTHO05D005051 7.7e-16 87.4 106 46.2
AL7G46670 Arabidopsis lyrata HOM05D000237 ORTHO05D005051 1.0e-15 87.0 118 44.9
Carub.0002s1249 Capsella rubella HOM05D000237 ORTHO05D005051 1.0e-15 87.0 115 44.3
Thhalv10027710m.g Eutrema salsugineum HOM05D000237 ORTHO05D005051 1.0e-15 87.0 112 47.3
BraA07t30967Z Brassica rapa HOM05D000237 ORTHO05D005051 2.2e-15 85.9 114 48.2
Sp5g21520 Schrenkiella parvula HOM05D000237 ORTHO05D005051 2.2e-15 85.9 115 44.3
BcaB03g15269 Brassica carinata HOM05D000237 ORTHO05D005051 3.8e-15 85.1 114 48.2
THA.LOC104805606 Tarenaya hassleriana HOM05D000237 ORTHO05D005051 3.8e-15 85.1 110 46.4
Aa31LG9G17360 Aethionema arabicum HOM05D000237 ORTHO05D005051 5.0e-15 84.7 118 42.4
A07p33400 Brassica napus HOM05D000237 ORTHO05D005051 6.5e-15 84.3 114 47.4
CSS0016103 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D043278 6.5e-15 84.3 101 45.5
Sed0017144 Sechium edule HOM05D000237 ORTHO05D005051 1.1e-14 83.6 111 43.2
Lj2C434T10 Lonicera japonica HOM05D000237 ORTHO05D005051 1.4e-14 83.2 101 46.5
Nitab4.5_0003855g0010 Nicotiana tabacum HOM05D000237 ORTHO05D005051 1.4e-14 83.2 105 45.7
Peaxi162Scf01482g00010 Petunia axillaris HOM05D000237 ORTHO05D005051 1.4e-14 83.2 105 43.8
Peaxi162Scf02113g00020 Petunia axillaris HOM05D000237 ORTHO05D005051 1.4e-14 83.2 102 46.1
ECA246G3284 Erigeron canadensis HOM05D000237 ORTHO05D005051 1.9e-14 82.8 105 42.9
Nn3g18249 Nelumbo nucifera HOM05D000237 ORTHO05D005051 1.9e-14 82.8 104 42.3
Nitab4.5_0000036g0490 Nicotiana tabacum HOM05D000237 ORTHO05D005051 3.2e-14 82.0 105 45.7
PGR042G0645 Punica granatum HOM05D000237 ORTHO05D005051 3.2e-14 82.0 116 42.2
Rhsim08G0086700 Rhododendron simsii HOM05D000237 ORTHO05D005051 4.2e-14 81.6 104 44.2
Oeu000909.1 Olea europaea HOM05D000237 ORTHO05D005051 1.6e-13 79.7 104 47.1
AL2G24280 Arabidopsis lyrata HOM05D000237 ORTHO05D005051 2.1e-13 79.3 114 45.6
C06p39800 Brassica napus HOM05D000237 ORTHO05D005051 2.1e-13 79.3 113 45.1
CARHR058430 Cardamine hirsuta HOM05D000237 ORTHO05D005051 2.1e-13 79.3 114 41.2
Nitab4.5_0009638g0030 Nicotiana tabacum HOM05D000237 ORTHO05D005051 2.1e-13 79.3 102 46.1
Sp7g04250 Schrenkiella parvula HOM05D000237 ORTHO05D005051 2.1e-13 79.3 107 43.9
vmacro18047 Vaccinium macrocarpon HOM05D000237 ORTHO05D005051 2.1e-13 79.3 104 41.3
Aa31LG2G3110 Aethionema arabicum HOM05D000237 ORTHO05D005051 2.7e-13 79.0 114 43.0
Eucgr.J01549 Eucalyptus grandis HOM05D000237 ORTHO05D005051 2.7e-13 79.0 112 40.2
Nitab4.5_0002664g0070 Nicotiana tabacum HOM05D000237 ORTHO05D005051 2.7e-13 79.0 102 44.1
BcaC08g44350 Brassica carinata HOM05D000237 ORTHO05D005051 3.6e-13 78.6 109 45.9
C06p17910 Brassica napus HOM05D000237 ORTHO05D005051 3.6e-13 78.6 109 45.9
BolC6t39067H Brassica oleracea HOM05D000237 ORTHO05D005051 3.6e-13 78.6 113 45.1
DCAR_021456 Daucus carota HOM05D000237 ORTHO05D005051 3.6e-13 78.6 104 42.3
BcaC02g09612 Brassica carinata HOM05D000237 ORTHO05D005051 6.1e-13 77.8 109 43.1
C04p44730 Brassica napus HOM05D000237 ORTHO05D005051 6.1e-13 77.8 109 43.1
BolC4t26047H Brassica oleracea HOM05D000237 ORTHO05D005051 6.1e-13 77.8 109 43.1
THA.LOC104822378 Tarenaya hassleriana HOM05D000237 ORTHO05D005051 6.1e-13 77.8 116 43.1
BcaC08g46055 Brassica carinata HOM05D000237 ORTHO05D005051 1.0e-12 77.0 113 44.2
MSTRG.3516 Avicennia marina HOM05D000237 ORTHO05D005051 1.4e-12 76.6 104 43.3
BcaB06g27140 Brassica carinata HOM05D000237 ORTHO05D005051 1.4e-12 76.6 110 43.6
A04p10980 Brassica napus HOM05D000237 ORTHO05D005051 1.4e-12 76.6 109 44.0
BolC6t36981H Brassica oleracea HOM05D000237 ORTHO05D005051 1.4e-12 76.6 109 45.0
BraA04t16763Z Brassica rapa HOM05D000237 ORTHO05D005051 1.4e-12 76.6 109 44.0
CAN.G1061.45 Capsicum annuum HOM05D000237 ORTHO05D005051 1.4e-12 76.6 102 43.1
Oeu030813.2 Olea europaea HOM05D000237 ORTHO05D005051 1.4e-12 76.6 104 39.4
vmacro22372 Vaccinium macrocarpon HOM05D000237 ORTHO05D005051 1.4e-12 76.6 103 38.8
vmacro22898 Vaccinium macrocarpon HOM05D000237 ORTHO05D005051 1.4e-12 76.6 103 38.8
PGSC0003DMG400030607 Solanum tuberosum HOM05D000237 ORTHO05D005051 1.8e-12 76.3 102 46.1
FAN26G2327 Fragaria x ananassa HOM05D000237 ORTHO05D005051 2.3e-12 75.9 115 39.1
Oeu047408.1 Olea europaea HOM05D000237 ORTHO05D005051 2.3e-12 75.9 95 49.5
PSO017G6062 Papaver somniferum HOM05D000237 ORTHO05D005051 2.3e-12 75.9 114 37.7
Sc11g0008670 Simmondsia chinensis HOM05D000237 ORTHO05D005051 3.9e-12 75.1 104 38.5
Solyc02g091470.3 Solanum lycopersicum HOM05D000237 ORTHO05D005051 3.9e-12 75.1 102 46.1
Sopen02g036090 Solanum pennellii HOM05D000237 ORTHO05D005051 3.9e-12 75.1 102 46.1
THA.LOC104823844 Tarenaya hassleriana HOM05D000237 ORTHO05D005051 3.9e-12 75.1 108 41.7
EL10Ac2g04470 Beta vulgaris HOM05D000237 ORTHO05D005051 5.1e-12 74.7 107 42.1
Solyc02g063330.3 Solanum lycopersicum HOM05D000237 ORTHO05D005051 6.7e-12 74.3 102 42.2
Sopen02g014400 Solanum pennellii HOM05D000237 ORTHO05D005051 8.8e-12 73.9 102 42.2
MSTRG.23617 Avicennia marina HOM05D000237 ORTHO05D005051 1.1e-11 73.6 103 43.7
PSO478G0921 Papaver somniferum HOM05D000237 ORTHO05D005051 1.1e-11 73.6 114 36.8
SGA_v2.0_scaffold49G18155 Striga asiatica HOM05D000237 ORTHO05D005051 1.1e-11 73.6 106 41.5
Ah.10g038030 Amaranthus hybridus HOM05D000237 ORTHO05D005051 1.5e-11 73.2 117 40.2
Aqoxy3G00096 Aquilegia oxysepala HOM05D000237 ORTHO05D005051 3.3e-11 72.0 115 38.3
CAN.G1067.6 Capsicum annuum HOM05D000237 ORTHO05D005051 3.3e-11 72.0 102 39.2
Thhalv10019672m.g Eutrema salsugineum HOM05D000237 ORTHO05D005051 4.3e-11 71.6 104 43.3
AUR62023182 Chenopodium quinoa HOM05D000237 ORTHO05D005051 5.7e-11 71.2 106 41.5
HanXRQChr12g0375611 Helianthus annuus HOM05D000237 ORTHO05D005051 5.7e-11 71.2 111 44.1
Lsat_1_v5_gn_3_81141 Lactuca sativa HOM05D000237 ORTHO05D005051 5.7e-11 71.2 105 43.8
Hund13686 Selenicereus undatus HOM05D000237 ORTHO05D005051 9.7e-11 70.5 115 35.7
PGSC0003DMG400010411 Solanum tuberosum HOM05D000237 ORTHO05D005051 9.7e-11 70.5 102 41.2
Ah.16g101240 Amaranthus hybridus HOM05D000237 ORTHO05D005051 1.7e-10 69.7 115 38.3
ATR0564G096 Amborella trichopoda HOM05D000237 ORTHO05D005051 2.2e-10 69.3 102 36.3
AUR62023228 Chenopodium quinoa HOM05D000237 ORTHO05D005051 4.8e-10 68.2 106 40.6
Migut.L00462 Erythranthe guttata HOM05D000237 ORTHO05D005051 3.1e-09 65.5 105 38.1
SalBow3G2506 Salvia bowleyana HOM05D000237 ORTHO05D005051 6.9e-09 64.3 104 40.4
Migut.H00274 Erythranthe guttata HOM05D000237 ORTHO05D005051 2.6e-08 62.4 108 41.7
Hund16211 Selenicereus undatus HOM05D000237 ORTHO05D005051 2.6e-08 62.4 107 36.4
MBI12_g45865_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D005051 2.5e-06 55.8 104 36.5
MBI12_g44964_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D005051 4.2e-06 55.1 103 36.9


User provided reference genes

Program Settings