Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 8.6e-99 363.6 179 100.0
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 1.9e-93 345.9 179 91.1
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 2.1e-73 279.3 183 81.4
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 7.4e-66 254.2 183 75.4
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 3.1e-48 195.7 188 61.2
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 5.3e-48 194.9 187 62.6
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 9.4e-45 184.1 189 58.7
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 7.9e-44 181.0 189 56.1
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 4.2e-29 132.1 175 47.4
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 4.5e-23 112.1 145 47.6
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 7.7e-23 111.3 165 47.3
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.7e-22 110.2 165 43.6
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 1.7e-22 110.2 166 45.8
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 7.2e-21 104.8 169 44.4
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 1.2e-20 104.0 159 43.4
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 4.7e-20 102.1 160 42.5
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 1.0e-19 100.9 164 42.1
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 1.4e-19 100.5 187 40.1
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 1.8e-19 100.1 168 43.5
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 5.2e-19 98.6 180 42.8
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.5e-18 97.1 179 39.7
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 9.8e-18 94.4 180 39.4
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 9.8e-18 94.4 176 42.6
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.2e-17 93.2 180 38.9
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 3.7e-17 92.4 179 38.5
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.1e-16 90.9 174 39.1
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 1.1e-16 90.9 170 39.4
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.8e-16 90.1 174 40.8
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 3.1e-16 89.4 157 42.7
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 4.1e-16 89.0 166 39.2
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 5.4e-16 88.6 144 39.6
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 7.0e-16 88.2 174 43.1
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 9.1e-16 87.8 136 38.2
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.0e-15 86.7 174 39.7
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 2.0e-15 86.7 156 41.7
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 3.5e-15 85.9 136 38.2
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.5e-15 85.5 170 37.6
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 4.5e-15 85.5 170 37.6
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 7.7e-15 84.7 150 38.7
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 1.0e-14 84.3 181 30.9
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 1.0e-14 84.3 165 36.4
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 1.3e-14 84.0 161 40.4
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.7e-14 83.6 170 37.6
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 1.7e-14 83.6 159 35.2
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 2.2e-14 83.2 181 35.9
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 5.0e-14 82.0 167 40.1
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 6.5e-14 81.6 157 37.6
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 8.5e-14 81.3 124 41.9
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 8.5e-14 81.3 174 35.6
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 1.1e-13 80.9 121 39.7
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 2.5e-13 79.7 108 41.7
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.2e-13 79.3 167 38.9
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 5.5e-13 78.6 178 35.4
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 7.2e-13 78.2 165 38.8
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 9.4e-13 77.8 153 37.9
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 9.4e-13 77.8 156 41.0
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 4.7e-12 75.5 167 35.3
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 6.1e-12 75.1 136 39.7
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 6.1e-12 75.1 173 32.9
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 6.1e-12 75.1 149 41.6
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 1.0e-11 74.3 171 37.4
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.8e-11 73.6 161 37.3
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 2.3e-11 73.2 148 40.5
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 3.0e-11 72.8 162 35.8
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 3.0e-11 72.8 182 34.1
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 5.2e-11 72.0 126 39.7
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.8e-11 71.2 154 35.1
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 8.8e-11 71.2 156 36.5
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 8.8e-11 71.2 161 36.6
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 1.2e-10 70.9 153 38.6
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.5e-10 70.5 162 33.3
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 2.6e-10 69.7 157 37.6
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 3.4e-10 69.3 149 36.2
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 5.7e-10 68.6 159 32.1
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 7.5e-10 68.2 161 37.3
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 7.5e-10 68.2 150 36.7
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.8e-10 67.8 167 37.7
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 1.7e-09 67.0 164 34.1
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 2.2e-09 66.6 153 35.9
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.2e-09 66.6 172 35.5
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 2.8e-09 66.2 164 34.1
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 8.3e-09 64.7 134 41.0
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.1e-08 64.3 139 30.2
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 1.1e-08 64.3 164 32.3
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.1e-08 64.3 155 36.8
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.4e-08 63.9 175 26.9
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 1.4e-08 63.9 161 31.1
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 1.4e-08 63.9 161 32.3
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 1.8e-08 63.5 140 33.6
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 2.4e-08 63.2 170 33.5
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 5.4e-08 62.0 157 33.1
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.1e-08 61.2 158 30.4
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 1.2e-07 60.8 152 35.5
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 1.2e-07 60.8 151 39.1
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 1.2e-07 60.8 161 32.9
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 1.6e-07 60.5 167 31.7
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 2.0e-07 60.1 157 34.4
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 2.0e-07 60.1 161 32.9
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.7e-07 59.7 161 37.9
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 3.5e-07 59.3 162 30.2
Glyma.06G048800 Glycine max HOM05D014755 ORTHO05D005146 3.5e-07 59.3 144 33.3
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 4.5e-07 58.9 169 29.6
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 4.5e-07 58.9 139 33.1
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 5.9e-07 58.5 147 31.3
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 5.9e-07 58.5 139 30.9
MBI16_g06081_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 7.7e-07 58.2 117 42.7
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 1.0e-06 57.8 165 30.9
ECA232G3441 Erigeron canadensis HOM05D005317 ORTHO05D005146 1.0e-06 57.8 168 32.1
ClCG05G026550 Citrullus lanatus HOM05D029900 ORTHO05D005146 2.3e-06 56.6 155 31.6
Phvul.009G074100 Phaseolus vulgaris HOM05D014755 ORTHO05D012905 3.8e-06 55.8 136 33.1
CsaV3_4G035270 Cucumis sativus L. HOM05D029900 ORTHO05D005146 5.0e-06 55.5 179 27.4
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.0e-06 55.5 158 28.5
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 8.6e-06 54.7 151 29.8
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 8.6e-06 54.7 133 30.8


User provided reference genes

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