Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 1.1e-144 516.5 252 100.0
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 7.3e-128 460.7 252 88.1
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 4.9e-124 448.0 253 86.6
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 3.2e-123 445.3 253 86.2
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 4.3e-112 408.3 253 79.4
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 4.7e-111 404.8 252 77.8
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 6.9e-110 401.0 250 79.2
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 9.9e-109 397.1 254 77.2
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 3.8e-108 395.2 251 76.5
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 1.2e-106 390.2 250 76.0
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 1.9e-99 366.3 254 73.2
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 2.7e-98 362.5 243 72.8
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 1.8e-97 359.8 255 72.5
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 6.7e-97 357.8 245 72.2
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 8.7e-97 357.5 254 70.5
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 4.3e-96 355.1 262 69.1
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 2.8e-95 352.4 253 68.8
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.8e-95 352.4 253 70.8
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 3.7e-95 352.1 255 67.1
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 4.8e-95 351.7 200 80.0
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 1.8e-94 349.7 248 69.0
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 2.4e-94 349.4 248 70.6
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 3.1e-94 349.0 230 73.5
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 5.3e-94 348.2 253 68.4
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 6.9e-94 347.8 257 68.5
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 9.0e-94 347.4 250 68.4
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.2e-93 347.1 248 68.1
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 1.2e-93 347.1 240 69.6
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 2.0e-93 346.3 247 70.0
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 2.0e-93 346.3 253 67.6
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 2.0e-93 346.3 199 80.9
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 3.4e-93 345.5 255 68.6
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 3.4e-93 345.5 253 68.8
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 5.8e-93 344.7 222 73.0
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 9.9e-93 344.0 251 68.9
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 1.3e-92 343.6 195 80.5
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 2.9e-92 342.4 244 68.4
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 8.4e-92 340.9 246 67.9
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 1.4e-91 340.1 246 69.9
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 4.2e-91 338.6 232 70.7
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.1e-91 337.8 252 68.3
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 7.1e-91 337.8 251 67.7
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 7.1e-91 337.8 256 66.8
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.2e-90 337.0 194 78.4
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.2e-90 337.0 258 64.3
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 1.6e-90 336.7 240 68.3
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.1e-90 336.3 239 68.2
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 6.0e-90 334.7 197 78.7
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 1.0e-89 334.0 253 67.6
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 1.3e-89 333.6 250 68.8
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 1.8e-89 333.2 252 67.5
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.8e-89 333.2 252 67.5
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 3.0e-89 332.4 258 64.0
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.9e-89 332.0 244 68.0
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 3.9e-89 332.0 248 66.5
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 8.7e-89 330.9 255 65.1
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.9e-88 329.7 248 66.1
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.9e-88 329.7 248 66.1
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 1.9e-88 329.7 262 64.1
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 2.5e-88 329.3 242 65.7
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 3.3e-88 328.9 240 67.9
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 5.6e-88 328.2 204 75.0
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.3e-87 327.0 226 71.7
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 2.8e-87 325.9 238 67.2
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 8.2e-87 324.3 247 67.2
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 1.1e-86 323.9 250 67.6
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 1.4e-86 323.6 246 63.4
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 1.8e-86 323.2 206 72.3
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 1.8e-86 323.2 255 63.9
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 2.4e-86 322.8 240 65.4
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.2e-85 320.5 239 66.5
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 2.0e-85 319.7 240 64.6
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 5.8e-85 318.2 197 74.1
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 7.6e-85 317.8 251 64.1
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 7.6e-85 317.8 209 71.8
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 7.6e-85 317.8 195 75.4
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 1.0e-84 317.4 213 70.9
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 1.3e-84 317.0 262 61.5
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 2.2e-84 316.2 236 64.4
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 4.9e-84 315.1 237 63.3
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.1e-83 313.9 255 62.0
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 2.5e-83 312.8 221 66.5
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 2.1e-82 309.7 199 71.9
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 2.1e-82 309.7 243 63.4
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 2.7e-82 309.3 256 60.5
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 3.5e-82 308.9 251 63.7
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 4.6e-82 308.5 192 74.5
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 7.9e-82 307.8 246 64.2
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 1.0e-81 307.4 263 60.5
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 1.3e-81 307.0 253 60.1
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 1.8e-81 306.6 261 60.9
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 1.8e-81 306.6 261 60.9
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 1.8e-81 306.6 253 60.1
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 2.3e-81 306.2 198 71.7
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 3.9e-81 305.4 262 58.0
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 3.9e-81 305.4 192 74.0
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 5.1e-81 305.1 254 62.2
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 6.7e-81 304.7 160 88.1
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 3.3e-80 302.4 262 57.3
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.7e-80 301.6 243 64.2
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 9.7e-80 300.8 193 71.0
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 1.6e-79 300.1 257 61.9
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 4.8e-79 298.5 158 86.1
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 3.1e-78 295.8 199 71.4
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 6.9e-78 294.7 206 68.9
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 1.2e-77 293.9 261 59.4
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 2.0e-77 293.1 229 65.1
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.7e-77 291.2 252 61.5
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 7.7e-77 291.2 199 70.4
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.0e-76 290.8 161 82.6
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 1.7e-76 290.0 167 76.6
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 3.8e-76 288.9 254 61.0
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 8.8e-73 277.7 188 69.7
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 1.7e-71 273.5 196 65.3
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 6.3e-71 271.6 152 83.6
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 1.2e-69 267.3 250 58.4
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.4e-67 260.4 259 52.9
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 6.1e-66 255.0 260 54.6
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 2.0e-61 240.0 182 54.9
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 2.6e-61 239.6 250 53.6
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 1.0e-57 227.6 145 74.5
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 2.6e-53 213.0 196 49.5
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 4.2e-51 205.7 193 56.0
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 2.1e-50 203.4 131 68.7
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.4e-49 200.7 166 64.5
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 7.0e-46 188.3 102 82.4
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.7e-45 186.4 103 79.6
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.7e-39 167.2 112 65.2
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.2e-35 152.5 156 56.4
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 1.8e-33 147.1 93 72.0
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 4.0e-33 146.0 102 67.6
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 9.8e-32 141.4 101 67.3
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.6e-28 128.6 194 38.7
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 9.8e-24 114.8 159 39.0
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.6e-21 107.5 69 76.8
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 3.5e-21 106.3 156 43.6
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 6.0e-21 105.5 234 30.8
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 3.9e-20 102.8 218 30.7
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 3.3e-19 99.8 209 30.1
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 9.5e-19 98.2 53 84.9
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 2.3e-17 93.6 176 33.0
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 1.3e-15 87.8 155 40.6
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 4.9e-15 85.9 133 38.3
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 1.9e-14 84.0 125 34.4
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 1.5e-11 74.3 218 30.3
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 2.5e-11 73.6 230 23.9
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.6e-10 69.7 94 42.6
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 4.7e-10 69.3 109 45.0
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 1.8e-09 67.4 37 81.1
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 1.8e-09 67.4 84 44.0
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.7e-07 60.8 99 34.3


User provided reference genes

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